LCNE-patchseq-analysis 0.0.1__tar.gz → 0.0.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/.gitignore +3 -0
  2. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/PKG-INFO +1 -1
  3. lcne_patchseq_analysis-0.0.2/environment/Dockerfile +27 -0
  4. lcne_patchseq_analysis-0.0.2/environment/postInstall +27 -0
  5. lcne_patchseq_analysis-0.0.2/src/LCNE_patchseq_analysis/__init__.py +2 -0
  6. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/src/LCNE_patchseq_analysis.egg-info/PKG-INFO +1 -1
  7. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/src/LCNE_patchseq_analysis.egg-info/SOURCES.txt +2 -0
  8. lcne_patchseq_analysis-0.0.1/src/LCNE_patchseq_analysis/__init__.py +0 -2
  9. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/.flake8 +0 -0
  10. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/.github/ISSUE_TEMPLATE/bug_report.md +0 -0
  11. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/.github/ISSUE_TEMPLATE/feature_request.md +0 -0
  12. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/.github/ISSUE_TEMPLATE/user-story.md +0 -0
  13. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/.github/workflows/init.yml +0 -0
  14. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/.github/workflows/tag_and_publish.yml +0 -0
  15. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/.github/workflows/test_and_lint.yml +0 -0
  16. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/LICENSE +0 -0
  17. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/README.md +0 -0
  18. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/docs/Makefile +0 -0
  19. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/docs/make.bat +0 -0
  20. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/docs/source/_static/dark-logo.svg +0 -0
  21. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/docs/source/_static/favicon.ico +0 -0
  22. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/docs/source/_static/light-logo.svg +0 -0
  23. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/docs/source/conf.py +0 -0
  24. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/docs/source/index.rst +0 -0
  25. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/pyproject.toml +0 -0
  26. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/setup.cfg +0 -0
  27. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/setup.py +0 -0
  28. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/src/LCNE_patchseq_analysis.egg-info/dependency_links.txt +0 -0
  29. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/src/LCNE_patchseq_analysis.egg-info/requires.txt +0 -0
  30. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/src/LCNE_patchseq_analysis.egg-info/top_level.txt +0 -0
  31. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/tests/__init__.py +0 -0
  32. {lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/tests/test_example.py +0 -0
{lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/.gitignore RENAMED
@@ -137,3 +137,6 @@ dmypy.json
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  # MacOs
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  **/.DS_Store
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+
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+ .vscode
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+ metadata.yml
{lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.2
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  Name: LCNE-patchseq-analysis
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- Version: 0.0.1
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+ Version: 0.0.2
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  Summary: Generated from aind-library-template
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  Author: Allen Institute for Neural Dynamics
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  Author-email: Han Hou <han.hou@alleninstitute.org>
lcne_patchseq_analysis-0.0.2/environment/Dockerfile ADDED
@@ -0,0 +1,27 @@
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+ # hash:sha256:4381990f759d87b4e81e36c74374fc4954659b3ccf18d32d432653272a4faa93
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+ ARG REGISTRY_HOST
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+ FROM $REGISTRY_HOST/codeocean/jupyterlab:3.6.1-miniconda4.12.0-python3.9-ubuntu20.04
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+
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+ ARG DEBIAN_FRONTEND=noninteractive
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+
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+ ARG GIT_ASKPASS
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+ ARG GIT_ACCESS_TOKEN
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+ COPY git-askpass /
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+
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+ ADD "https://github.com/coder/code-server/releases/download/v4.95.3/code-server-4.95.3-linux-amd64.tar.gz" /.code-server/code-server.tar.gz
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+
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+ RUN cd /.code-server \
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+ && tar -xvf code-server.tar.gz \
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+ && rm code-server.tar.gz \
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+ && ln -s /.code-server/code-server-4.95.3-linux-amd64/bin/code-server /usr/bin/code-server
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+
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+ RUN mkdir -p /.vscode/extensions \
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+ && code-server --extensions-dir="/.vscode/extensions" --install-extension REditorSupport.R \
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+ && code-server --extensions-dir="/.vscode/extensions" --install-extension continue.continue \
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+ && code-server --extensions-dir="/.vscode/extensions" --install-extension ms-python.python \
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+ && code-server --extensions-dir="/.vscode/extensions" --install-extension ms-toolsai.jupyter \
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+ && code-server --extensions-dir="/.vscode/extensions" --install-extension reageyao.bioSyntax \
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+ && code-server --extensions-dir="/.vscode/extensions" --install-extension saoudrizwan.claude-dev
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+
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+ COPY postInstall /
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+ RUN /postInstall
lcne_patchseq_analysis-0.0.2/environment/postInstall ADDED
@@ -0,0 +1,27 @@
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+ #!/usr/bin/env bash
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+ set -e
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+
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+ # check if code-server is installed, and then install extensions into specified directory
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+ if code-server --disable-telemetry --version; then
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+ if [ ! -d "/.vscode/extensions" ]
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+ then
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+ echo "Directory /.vscode/extensions DOES NOT exists."
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+ mkdir -p /.vscode/extensions/
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+ fi
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+
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+ code-server --disable-telemetry --extensions-dir=/.vscode/extensions --install-extension ms-python.python
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+ code-server --disable-telemetry --extensions-dir=/.vscode/extensions --install-extension njpwerner.autodocstring
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+ code-server --disable-telemetry --extensions-dir=/.vscode/extensions --install-extension KevinRose.vsc-python-indent
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+ code-server --disable-telemetry --extensions-dir=/.vscode/extensions --install-extension mhutchie.git-graph
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+ code-server --disable-telemetry --extensions-dir=/.vscode/extensions --install-extension zhuangtongfa.material-theme
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+ code-server --disable-telemetry --extensions-dir=/.vscode/extensions --install-extension ms-python.black-formatter
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+ # code-server --disable-telemetry --extensions-dir=/.vscode/extensions --install-extension ryanluker.vscode-coverage-gutters
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+
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+ curl -L -o copilot_1.161.zip https://github.com/user-attachments/files/16859733/copilot_1.161.zip
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+ unzip copilot_1.161.zip
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+ code-server --disable-telemetry --extensions-dir=/.vscode/extensions --install-extension GitHub.copilot-1.161.0.vsix
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+ rm copilot_1.161.zip GitHub.copilot-1.161.0.vsix
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+
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+ else
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+ echo "code-server not found"
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+ fi
lcne_patchseq_analysis-0.0.2/src/LCNE_patchseq_analysis/__init__.py ADDED
@@ -0,0 +1,2 @@
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+ """Init package"""
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+ __version__ = "0.0.2"
{lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/src/LCNE_patchseq_analysis.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.2
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  Name: LCNE-patchseq-analysis
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- Version: 0.0.1
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+ Version: 0.0.2
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  Summary: Generated from aind-library-template
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  Author: Allen Institute for Neural Dynamics
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  Author-email: Han Hou <han.hou@alleninstitute.org>
{lcne_patchseq_analysis-0.0.1 → lcne_patchseq_analysis-0.0.2}/src/LCNE_patchseq_analysis.egg-info/SOURCES.txt RENAMED
@@ -17,6 +17,8 @@ docs/source/index.rst
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  docs/source/_static/dark-logo.svg
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  docs/source/_static/favicon.ico
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  docs/source/_static/light-logo.svg
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+ environment/Dockerfile
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+ environment/postInstall
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  src/LCNE_patchseq_analysis/__init__.py
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  src/LCNE_patchseq_analysis.egg-info/PKG-INFO
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  src/LCNE_patchseq_analysis.egg-info/SOURCES.txt
lcne_patchseq_analysis-0.0.1/src/LCNE_patchseq_analysis/__init__.py DELETED
@@ -1,2 +0,0 @@
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- """Init package"""
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- __version__ = "0.0.1"