HTSeq 2.0.9__tar.gz → 2.1.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (55) hide show
  1. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/StepVector.py +2 -2
  2. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/__init__.py +360 -242
  3. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/features.py +30 -14
  4. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/utils.py +9 -12
  5. htseq-2.1.2/HTSeq.egg-info/PKG-INFO +813 -0
  6. {htseq-2.0.9 → htseq-2.1.2}/HTSeq.egg-info/SOURCES.txt +1 -5
  7. htseq-2.1.2/HTSeq.egg-info/entry_points.txt +4 -0
  8. {htseq-2.0.9 → htseq-2.1.2}/MANIFEST.in +0 -2
  9. htseq-2.1.2/PKG-INFO +813 -0
  10. {htseq-2.0.9 → htseq-2.1.2}/README.md +2 -1
  11. htseq-2.1.2/pyproject.toml +75 -0
  12. htseq-2.1.2/setup.py +103 -0
  13. {htseq-2.0.9 → htseq-2.1.2}/src/StepVector.py +2 -2
  14. {htseq-2.0.9 → htseq-2.1.2}/src/StepVector_wrap.cxx +977 -503
  15. {htseq-2.0.9 → htseq-2.1.2}/src/_HTSeq.c +23385 -29301
  16. htseq-2.1.2/test/test_general.py +26 -0
  17. {htseq-2.0.9 → htseq-2.1.2}/test/test_genomic.py +88 -72
  18. htseq-2.1.2/test/test_htseq-count.py +972 -0
  19. htseq-2.1.2/test/test_parsers.py +188 -0
  20. htseq-2.0.9/HTSeq/_version.py +0 -1
  21. htseq-2.0.9/HTSeq.egg-info/PKG-INFO +0 -130
  22. htseq-2.0.9/PKG-INFO +0 -130
  23. htseq-2.0.9/VERSION +0 -1
  24. htseq-2.0.9/pyproject.toml +0 -3
  25. htseq-2.0.9/scripts/htseq-count +0 -6
  26. htseq-2.0.9/scripts/htseq-count-barcodes +0 -5
  27. htseq-2.0.9/scripts/htseq-qa +0 -5
  28. htseq-2.0.9/setup.py +0 -234
  29. htseq-2.0.9/test/test_general.py +0 -25
  30. htseq-2.0.9/test/test_htseq-count.py +0 -758
  31. htseq-2.0.9/test/test_parsers.py +0 -185
  32. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/StretchVector.py +0 -0
  33. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/_HTSeq_internal.py +0 -0
  34. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/scripts/__init__.py +0 -0
  35. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/scripts/count.py +0 -0
  36. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/scripts/count_features/__init__.py +0 -0
  37. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/scripts/count_features/count_features_per_file.py +0 -0
  38. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/scripts/count_features/reads_io_processor.py +0 -0
  39. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/scripts/count_features/reads_stats.py +0 -0
  40. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/scripts/count_old.py +0 -0
  41. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/scripts/count_with_barcodes.py +0 -0
  42. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/scripts/qa.py +0 -0
  43. {htseq-2.0.9 → htseq-2.1.2}/HTSeq/scripts/utils.py +0 -0
  44. {htseq-2.0.9 → htseq-2.1.2}/HTSeq.egg-info/dependency_links.txt +0 -0
  45. {htseq-2.0.9 → htseq-2.1.2}/HTSeq.egg-info/requires.txt +0 -0
  46. {htseq-2.0.9 → htseq-2.1.2}/HTSeq.egg-info/top_level.txt +0 -0
  47. {htseq-2.0.9 → htseq-2.1.2}/LICENSE +0 -0
  48. {htseq-2.0.9 → htseq-2.1.2}/setup.cfg +0 -0
  49. {htseq-2.0.9 → htseq-2.1.2}/src/AutoPyObjPtr.i +0 -0
  50. {htseq-2.0.9 → htseq-2.1.2}/src/HTSeq/_HTSeq.pxd +0 -0
  51. {htseq-2.0.9 → htseq-2.1.2}/src/HTSeq/_HTSeq.pyx +0 -0
  52. {htseq-2.0.9 → htseq-2.1.2}/src/HTSeq/__init__.py +0 -0
  53. {htseq-2.0.9 → htseq-2.1.2}/src/StepVector.i +0 -0
  54. {htseq-2.0.9 → htseq-2.1.2}/src/step_vector.h +0 -0
  55. {htseq-2.0.9 → htseq-2.1.2}/test/test_stretch_vector.py +0 -0
{htseq-2.0.9 → htseq-2.1.2}/HTSeq/StepVector.py RENAMED
@@ -1,12 +1,12 @@
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  # This file was automatically generated by SWIG (https://www.swig.org).
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- # Version 4.2.1
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+ # Version 4.4.1
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  #
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  # Do not make changes to this file unless you know what you are doing - modify
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  # the SWIG interface file instead.
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  from sys import version_info as _swig_python_version_info
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  # Import the low-level C/C++ module
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- if __package__ or "." in __name__:
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+ if getattr(globals().get("__spec__"), "parent", None) or __package__ or "." in __name__:
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  from . import _StepVector
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  else:
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  import _StepVector