HTSeq 2.0.8__tar.gz → 2.1.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (55) hide show
  1. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/StepVector.py +2 -2
  2. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/__init__.py +360 -242
  3. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/features.py +47 -20
  4. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/scripts/count.py +49 -13
  5. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/scripts/count_with_barcodes.py +7 -4
  6. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/utils.py +9 -12
  7. htseq-2.1.2/HTSeq.egg-info/PKG-INFO +813 -0
  8. {htseq-2.0.8 → htseq-2.1.2}/HTSeq.egg-info/SOURCES.txt +1 -5
  9. htseq-2.1.2/HTSeq.egg-info/entry_points.txt +4 -0
  10. {htseq-2.0.8 → htseq-2.1.2}/MANIFEST.in +0 -2
  11. htseq-2.1.2/PKG-INFO +813 -0
  12. {htseq-2.0.8 → htseq-2.1.2}/README.md +2 -1
  13. htseq-2.1.2/pyproject.toml +75 -0
  14. htseq-2.1.2/setup.py +103 -0
  15. {htseq-2.0.8 → htseq-2.1.2}/src/StepVector.py +2 -2
  16. {htseq-2.0.8 → htseq-2.1.2}/src/StepVector_wrap.cxx +977 -503
  17. {htseq-2.0.8 → htseq-2.1.2}/src/_HTSeq.c +22916 -28785
  18. htseq-2.1.2/test/test_general.py +26 -0
  19. {htseq-2.0.8 → htseq-2.1.2}/test/test_genomic.py +88 -72
  20. htseq-2.1.2/test/test_htseq-count.py +972 -0
  21. htseq-2.1.2/test/test_parsers.py +188 -0
  22. htseq-2.0.8/HTSeq/_version.py +0 -1
  23. htseq-2.0.8/HTSeq.egg-info/PKG-INFO +0 -130
  24. htseq-2.0.8/PKG-INFO +0 -130
  25. htseq-2.0.8/VERSION +0 -1
  26. htseq-2.0.8/pyproject.toml +0 -3
  27. htseq-2.0.8/scripts/htseq-count +0 -6
  28. htseq-2.0.8/scripts/htseq-count-barcodes +0 -5
  29. htseq-2.0.8/scripts/htseq-qa +0 -5
  30. htseq-2.0.8/setup.py +0 -234
  31. htseq-2.0.8/test/test_general.py +0 -25
  32. htseq-2.0.8/test/test_htseq-count.py +0 -723
  33. htseq-2.0.8/test/test_parsers.py +0 -185
  34. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/StretchVector.py +0 -0
  35. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/_HTSeq_internal.py +0 -0
  36. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/scripts/__init__.py +0 -0
  37. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/scripts/count_features/__init__.py +0 -0
  38. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/scripts/count_features/count_features_per_file.py +0 -0
  39. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/scripts/count_features/reads_io_processor.py +0 -0
  40. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/scripts/count_features/reads_stats.py +0 -0
  41. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/scripts/count_old.py +0 -0
  42. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/scripts/qa.py +0 -0
  43. {htseq-2.0.8 → htseq-2.1.2}/HTSeq/scripts/utils.py +0 -0
  44. {htseq-2.0.8 → htseq-2.1.2}/HTSeq.egg-info/dependency_links.txt +0 -0
  45. {htseq-2.0.8 → htseq-2.1.2}/HTSeq.egg-info/requires.txt +0 -0
  46. {htseq-2.0.8 → htseq-2.1.2}/HTSeq.egg-info/top_level.txt +0 -0
  47. {htseq-2.0.8 → htseq-2.1.2}/LICENSE +0 -0
  48. {htseq-2.0.8 → htseq-2.1.2}/setup.cfg +0 -0
  49. {htseq-2.0.8 → htseq-2.1.2}/src/AutoPyObjPtr.i +0 -0
  50. {htseq-2.0.8 → htseq-2.1.2}/src/HTSeq/_HTSeq.pxd +0 -0
  51. {htseq-2.0.8 → htseq-2.1.2}/src/HTSeq/_HTSeq.pyx +0 -0
  52. {htseq-2.0.8 → htseq-2.1.2}/src/HTSeq/__init__.py +0 -0
  53. {htseq-2.0.8 → htseq-2.1.2}/src/StepVector.i +0 -0
  54. {htseq-2.0.8 → htseq-2.1.2}/src/step_vector.h +0 -0
  55. {htseq-2.0.8 → htseq-2.1.2}/test/test_stretch_vector.py +0 -0
{htseq-2.0.8 → htseq-2.1.2}/HTSeq/StepVector.py RENAMED
@@ -1,12 +1,12 @@
1
1
  # This file was automatically generated by SWIG (https://www.swig.org).
2
- # Version 4.2.1
2
+ # Version 4.4.1
3
3
  #
4
4
  # Do not make changes to this file unless you know what you are doing - modify
5
5
  # the SWIG interface file instead.
6
6
 
7
7
  from sys import version_info as _swig_python_version_info
8
8
  # Import the low-level C/C++ module
9
- if __package__ or "." in __name__:
9
+ if getattr(globals().get("__spec__"), "parent", None) or __package__ or "." in __name__:
10
10
  from . import _StepVector
11
11
  else:
12
12
  import _StepVector