HTSeq 2.0.4__tar.gz → 2.0.7__tar.gz

{HTSeq-2.0.4 → htseq-2.0.7}/HTSeq/StepVector.py

@@ -1,5 +1,5 @@
 # This file was automatically generated by SWIG (https://www.swig.org).
-# Version 4.1.1
+# Version 4.2.1
 #
 # Do not make changes to this file unless you know what you are doing - modify
 # the SWIG interface file instead.

htseq-2.0.7/HTSeq/_version.py

@@ -0,0 +1 @@
+__version__ = "2.0.7"

{HTSeq-2.0.4 → htseq-2.0.7}/HTSeq.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: HTSeq
-Version: 2.0.4
+Version: 2.0.7
 Summary: A framework to process and analyze data from high-throughput sequencing (HTS) assays
 Home-page: https://github.com/htseq
 Author: Simon Anders, Fabio Zanini
@@ -16,9 +16,16 @@ Classifier: License :: OSI Approved :: GNU General Public License (GPL)
 Classifier: Operating System :: POSIX
 Classifier: Programming Language :: Python
 Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: numpy
+Requires-Dist: pysam
 Provides-Extra: htseq-qa
+Requires-Dist: matplotlib>=1.4; extra == "htseq-qa"
 Provides-Extra: test
-License-File: LICENSE
+Requires-Dist: scipy>=1.5.0; extra == "test"
+Requires-Dist: pytest>=6.2.5; extra == "test"
+Requires-Dist: pandas>=1.1.0; extra == "test"
+Requires-Dist: matplotlib>=1.4; extra == "test"
 
 ![CI](https://github.com/htseq/htseq/actions/workflows/ci.yml/badge.svg?branch=main)
 [![Documentation Status](https://readthedocs.org/projects/htseq/badge/?version=latest)](https://htseq.readthedocs.io)

{HTSeq-2.0.4 → htseq-2.0.7}/HTSeq.egg-info/SOURCES.txt

@@ -2,6 +2,7 @@ LICENSE
 MANIFEST.in
 README.md
 VERSION
+pyproject.toml
 setup.py
 HTSeq/StepVector.py
 HTSeq/StretchVector.py

{HTSeq-2.0.4 → htseq-2.0.7}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: HTSeq
-Version: 2.0.4
+Version: 2.0.7
 Summary: A framework to process and analyze data from high-throughput sequencing (HTS) assays
 Home-page: https://github.com/htseq
 Author: Simon Anders, Fabio Zanini
@@ -16,9 +16,16 @@ Classifier: License :: OSI Approved :: GNU General Public License (GPL)
 Classifier: Operating System :: POSIX
 Classifier: Programming Language :: Python
 Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: numpy
+Requires-Dist: pysam
 Provides-Extra: htseq-qa
+Requires-Dist: matplotlib>=1.4; extra == "htseq-qa"
 Provides-Extra: test
-License-File: LICENSE
+Requires-Dist: scipy>=1.5.0; extra == "test"
+Requires-Dist: pytest>=6.2.5; extra == "test"
+Requires-Dist: pandas>=1.1.0; extra == "test"
+Requires-Dist: matplotlib>=1.4; extra == "test"
 
 ![CI](https://github.com/htseq/htseq/actions/workflows/ci.yml/badge.svg?branch=main)
 [![Documentation Status](https://readthedocs.org/projects/htseq/badge/?version=latest)](https://htseq.readthedocs.io)

htseq-2.0.7/VERSION

@@ -0,0 +1 @@
+2.0.7

htseq-2.0.7/pyproject.toml

@@ -0,0 +1,3 @@
+[build-system]
+requires = ["setuptools", "wheel", "numpy", "Cython"]
+build-backend = "setuptools.build_meta"

{HTSeq-2.0.4 → htseq-2.0.7}/setup.py

@@ -78,48 +78,6 @@ kwargs = dict(
     },
   )
 
-try:
-    import numpy
-except ImportError:
-    sys.stderr.write("Setup script for HTSeq: Failed to import 'numpy'.\n")
-    sys.stderr.write("Please install numpy and then try again to install" +
-                     " HTSeq.\n")
-    sys.exit(1)
-
-
-numpy_include_dir = os.path.join(
-        os.path.dirname(numpy.__file__),
-        'core',
-        'include',
-        )
-
-
-#def get_include_dirs(cpp=False):
-#    '''OSX 10.14 and later split the /usr/include contents everywhere'''
-#    include_dirs = []
-#    if sys.platform != 'darwin':
-#        return include_dirs
-#
-#    paths = {
-#        'C': [
-#            '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/',
-#        ],
-#        'C++': [
-#            '/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/',
-#        ],
-#    }
-#
-#    for path in paths['C']:
-#        if os.path.isdir(path):
-#            include_dirs.append(path)
-#    if cpp:
-#        for path in paths['C++']:
-#            if os.path.isdir(path):
-#                include_dirs.append(path)
-#
-#    return include_dirs
-
-
 def get_library_dirs_cpp():
     '''OSX 10.14 and later messed up C/C++ library locations'''
     if sys.platform == 'darwin':
@@ -200,6 +158,16 @@ class Build_with_preprocess(build_py):
         build_py.run(self)
 
 
+def lazy_numpy_include_dir():
+    """Lazily obtain NumPy include directory."""
+    try:
+        import numpy
+        return os.path.join(os.path.dirname(numpy.__file__), 'core', 'include')
+    except ImportError:
+        sys.stderr.write("Failed to import 'numpy'. It is required for building HTSeq.\n")
+        sys.exit(1)
+
+
 setup(name='HTSeq',
       version=version,
       author='Simon Anders, Fabio Zanini',
@@ -225,7 +193,7 @@ setup(name='HTSeq',
          Extension(
              'HTSeq._HTSeq',
              ['src/_HTSeq.c'],
-             include_dirs=[numpy_include_dir],#+get_include_dirs(),
+             include_dirs=[lazy_numpy_include_dir()],#+get_include_dirs(),
              extra_compile_args=['-w']),
          Extension(
              'HTSeq._StepVector',

{HTSeq-2.0.4 → htseq-2.0.7}/src/StepVector.py

@@ -1,5 +1,5 @@
 # This file was automatically generated by SWIG (https://www.swig.org).
-# Version 4.1.1
+# Version 4.2.1
 #
 # Do not make changes to this file unless you know what you are doing - modify
 # the SWIG interface file instead.