GANDLF 0.1.6.dev20251030__tar.gz → 0.1.6.dev20251031__tar.gz
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- gandlf-0.1.6.dev20251031/GANDLF/version.py +1 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF.egg-info/PKG-INFO +1 -1
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/PKG-INFO +1 -1
- gandlf-0.1.6.dev20251030/GANDLF/version.py +0 -1
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/.dockerignore +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/CODE_OF_CONDUCT.md +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/CONTRIBUTING.md +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/Dockerfile-CPU +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/Dockerfile-CUDA11.8 +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/Dockerfile-CUDA12.6 +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/Dockerfile-ROCm +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/anonymize/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/anonymize/convert_to_nifti.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/cli/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/cli/config_generator.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/cli/data_split_saver.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/cli/deploy.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/cli/generate_metrics.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/cli/huggingface_hub_handler.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/cli/main_run.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/cli/patch_extraction.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/cli/post_training_model_optimization.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/cli/preprocess_and_save.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/cli/recover_config.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/compute/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/compute/forward_pass.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/compute/generic.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/compute/inference_loop.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/compute/loss_and_metric.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/compute/step.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/compute/training_loop.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/config_manager.py +0 -0
- {gandlf-0.1.6.dev20251030/GANDLF/privacy → gandlf-0.1.6.dev20251031/GANDLF/configuration}/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/configuration/default_config.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/configuration/differential_privacy_config.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/configuration/exclude_parameters.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/configuration/model_config.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/configuration/nested_training_config.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/configuration/optimizer_config.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/configuration/parameters_config.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/configuration/patch_sampler_config.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/configuration/post_processing_config.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/configuration/pre_processing_config.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/configuration/scheduler_config.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/configuration/user_defined_config.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/configuration/utils.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/configuration/validators.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/ImagesFromDataFrame.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/augmentation/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/augmentation/blur_enhanced.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/augmentation/hed_augs.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/augmentation/noise_enhanced.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/augmentation/rgb_augs.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/augmentation/rotations.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/augmentation/wrap_torchio.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/inference_dataloader_histopath.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/lightning_datamodule.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/patch_miner/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030/GANDLF/models/seg_modules → gandlf-0.1.6.dev20251031/GANDLF/data/patch_miner/opm}/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/patch_miner/opm/patch.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/patch_miner/opm/patch_manager.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/patch_miner/opm/utils.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/post_process/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/post_process/morphology.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/post_process/tensor.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/preprocessing/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/preprocessing/crop_zero_planes.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/preprocessing/non_zero_normalize.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/preprocessing/normalize_rgb.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/preprocessing/resample_minimum.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/preprocessing/rgb_conversion.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/preprocessing/template_matching/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/preprocessing/template_matching/base.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/preprocessing/template_matching/histogram_matching.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/preprocessing/template_matching/stain_extractors.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/preprocessing/template_matching/stain_normalizer.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/preprocessing/template_matching/utils.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/data/preprocessing/threshold_and_clip.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/anonymizer.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/cli_tool.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/collect_stats.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/config_generator.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/construct_csv.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/debug_info.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/deploy.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/generate_metrics.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/hf_hub_integration.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/optimize_model.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/patch_miner.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/preprocess.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/recover_config.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/run.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/split_csv.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/subcommands.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/entrypoints/verify_install.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/grad_clipping/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/grad_clipping/adaptive_gradient_clipping.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/grad_clipping/clip_gradients.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/grad_clipping/grad_scaler.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/inference_manager.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/logger.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/logging_config.yaml +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/losses/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/losses/hybrid.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/losses/hybrid_new.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/losses/loss_calculators.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/losses/loss_interface.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/losses/regression.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/losses/regression_new.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/losses/segmentation.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/losses/segmentation_new.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/metrics/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/metrics/classification.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/metrics/generic.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/metrics/metric_calculators.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/metrics/panoptica_config_brats.yaml +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/metrics/regression.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/metrics/segmentation.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/metrics/segmentation_panoptica.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/metrics/synthesis.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/MSDNet.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/__init__.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/brain_age.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/deep_unet.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/densenet.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/dynunet_wrapper.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/efficientnet.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/fcn.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/imagenet_unet.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/imagenet_vgg.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/light_unet.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/light_unet_multilayer.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/lightning_module.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/modelBase.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/resnet.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/sdnet.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/seg_modules/DecodingModule.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/seg_modules/DownsamplingModule.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/seg_modules/EncodingModule.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/seg_modules/FCNUpsamplingModule.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/seg_modules/IncConv.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/seg_modules/IncDownsamplingModule.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/seg_modules/IncDropout.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/seg_modules/IncUpsamplingModule.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/seg_modules/InceptionModule.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/seg_modules/InitialConv.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/seg_modules/Interpolate.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/seg_modules/ResNetModule.py +0 -0
- {gandlf-0.1.6.dev20251030 → gandlf-0.1.6.dev20251031}/GANDLF/models/seg_modules/UpsamplingModule.py +0 -0
- {gandlf-0.1.6.dev20251030/GANDLF/data/patch_miner/opm → gandlf-0.1.6.dev20251031/GANDLF/models/seg_modules}/__init__.py +0 -0
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