GANDLF 0.1.6.dev20250815__tar.gz → 0.1.6.dev20250816__tar.gz

{gandlf-0.1.6.dev20250815 → gandlf-0.1.6.dev20250816}/Dockerfile-CPU

@@ -7,6 +7,7 @@ ARG DEBIAN_FRONTEND=noninteractive
 
 # Install fresh Python and dependencies for build-from-source
 RUN apt-get update && apt-get install -y software-properties-common
+RUN apt-get install -y git
 RUN add-apt-repository ppa:deadsnakes/ppa
 RUN apt install -y python3.11 
 RUN apt install -y libpython3.11-dev 
@@ -18,18 +19,19 @@ RUN apt install -y python3-pip
 RUN apt-get install -y libjpeg8-dev zlib1g-dev libffi-dev libgl1
 # fix pip version because of weird PyYAML issue
 RUN python3.11 -m pip install --upgrade pip
+RUN python3.11 -m pip install uv
 # EXPLICITLY install cpu versions of torch/torchvision (not all versions have +cpu modes on PyPI...)
-RUN python3.11 -m pip install torch==2.7.1 torchvision==0.22.1 torchaudio==2.7.1 --index-url https://download.pytorch.org/whl/cpu
-RUN python3.11 -m pip install openvino-dev opencv-python-headless
+RUN uv pip install torch==2.7.1 torchvision==0.22.1 torchaudio==2.7.1 --index-url https://download.pytorch.org/whl/cpu --system
+RUN uv pip install openvino-dev opencv-python-headless --system
 
 # Do some dependency installation separately here to make layer caching more efficient
 COPY ./setup.py ./setup.py
 RUN python3.11 -c "from setup import requirements; file = open('requirements.txt', 'w'); file.writelines([req + '\n' for req in requirements]); file.close()" \
-  && python3.11 -m pip install -r ./requirements.txt
+  && uv pip install -r ./requirements.txt --system
 
 COPY . /GaNDLF
 WORKDIR /GaNDLF
-RUN python3.11 -m pip install -e .
+RUN uv pip install -e . --system
 # Entrypoint forces all commands given via "docker run" to go through python, CMD forces the default entrypoint script argument to be gandlf run
 # If a user calls "docker run gandlf:[tag] anonymize", it will resolve to running "gandlf anonymize" instead.
 # CMD is inherently overridden by args to "docker run", entrypoint is constant.

{gandlf-0.1.6.dev20250815 → gandlf-0.1.6.dev20250816}/Dockerfile-CUDA11.8

@@ -10,6 +10,7 @@ ENV DEBIAN_FRONTEND=noninteractive
 
 # Explicitly install python3.11 (this uses 11.1 for now, as PyTorch LTS 1.8.2 is built against it)
 RUN apt-get update && apt-get install -y software-properties-common
+RUN apt-get install -y git
 RUN add-apt-repository ppa:deadsnakes/ppa
 RUN apt install -y python3.11 
 RUN apt install -y libpython3.11-dev 
@@ -21,17 +22,18 @@ RUN apt install -y python3-pip
 RUN apt-get install -y libjpeg8-dev zlib1g-dev libffi-dev libgl1
 # fix pip version because of weird PyYAML issue
 RUN python3.11 -m pip install --upgrade pip
-RUN python3.11 -m pip install torch==2.7.1 torchvision==0.22.1 torchaudio==2.7.1 --index-url https://download.pytorch.org/whl/cu118
-RUN python3.11 -m pip install openvino-dev opencv-python-headless
+RUN python3.11 -m pip install uv
+RUN uv pip install torch==2.7.1 torchvision==0.22.1 torchaudio==2.7.1 --index-url https://download.pytorch.org/whl/cu118 --system
+RUN uv pip install openvino-dev opencv-python-headless --system
 
 # Do some dependency installation separately here to make layer caching more efficient
 COPY ./setup.py ./setup.py
 RUN python3.11 -c "from setup import requirements; file = open('requirements.txt', 'w'); file.writelines([req + '\n' for req in requirements]); file.close()" \
-  && python3.11 -m pip install -r ./requirements.txt
+  && uv pip install -r ./requirements.txt --system
 
 COPY . /GaNDLF
 WORKDIR /GaNDLF
-RUN python3.11 -m pip install -e .
+RUN uv pip install -e . --system
 
 # Entrypoint forces all commands given via "docker run" to go through python, CMD forces the default entrypoint script argument to be gandlf run
 # If a user calls "docker run gandlf:[tag] anonymize", it will resolve to running "gandlf anonymize" instead.

{gandlf-0.1.6.dev20250815 → gandlf-0.1.6.dev20250816}/Dockerfile-CUDA12.6

@@ -10,6 +10,7 @@ ENV DEBIAN_FRONTEND=noninteractive
 
 # Explicitly install python3.11 (this uses 11.1 for now, as PyTorch LTS 1.8.2 is built against it)
 RUN apt-get update && apt-get install -y software-properties-common
+RUN apt-get install -y git
 RUN add-apt-repository ppa:deadsnakes/ppa
 RUN apt install -y python3.11 
 RUN apt install -y libpython3.11-dev 
@@ -21,17 +22,18 @@ RUN apt install -y python3-pip
 RUN apt-get install -y libjpeg8-dev zlib1g-dev libffi-dev libgl1
 # fix pip version because of weird PyYAML issue
 RUN python3.11 -m pip install --upgrade pip
-RUN python3.11 -m pip install torch==2.7.1 torchvision==0.22.1 torchaudio==2.7.1 --index-url https://download.pytorch.org/whl/cu126
-RUN python3.11 -m pip install openvino-dev opencv-python-headless
+RUN python3.11 -m pip install uv
+RUN uv pip install torch==2.7.1 torchvision==0.22.1 torchaudio==2.7.1 --index-url https://download.pytorch.org/whl/cu126 --system
+RUN uv pip install openvino-dev opencv-python-headless --system
 
 # Do some dependency installation separately here to make layer caching more efficient
 COPY ./setup.py ./setup.py
 RUN python3.11 -c "from setup import requirements; file = open('requirements.txt', 'w'); file.writelines([req + '\n' for req in requirements]); file.close()" \
-  && python3.11 -m pip install -r ./requirements.txt
+  && uv pip install -r ./requirements.txt --system
 
 COPY . /GaNDLF
 WORKDIR /GaNDLF
-RUN python3.11 -m pip install -e .
+RUN uv pip install -e . --system
 
 # Entrypoint forces all commands given via "docker run" to go through python, CMD forces the default entrypoint script argument to be gandlf run
 # If a user calls "docker run gandlf:[tag] anonymize", it will resolve to running "gandlf anonymize" instead.

{gandlf-0.1.6.dev20250815 → gandlf-0.1.6.dev20250816}/Dockerfile-ROCm

@@ -8,6 +8,7 @@ LABEL version=1.0
 
 # The base image contains ROCm, python 3.9 and pytorch already, no need to install those
 RUN apt-get update && apt-get install -y software-properties-common
+RUN apt-get install -y git
 RUN add-apt-repository ppa:deadsnakes/ppa
 RUN apt install -y python3.11 
 RUN apt install -y libpython3.11-dev 
@@ -19,17 +20,18 @@ RUN apt install -y python3-pip
 RUN apt-get install -y python3.11 python3-pip libjpeg8-dev zlib1g-dev python3-dev libpython3.11-dev libffi-dev libgl1
 # fix pip version because of weird PyYAML issue
 RUN python3.11 -m pip install --upgrade pip
-RUN python3.11 -m pip install torch==2.7.1 torchvision==0.22.1 torchaudio==2.7.1 --index-url https://download.pytorch.org/whl/rocm6.3
-RUN python3.11 -m pip install openvino-dev opencv-python-headless
+RUN python3.11 -m pip install uv
+RUN uv pip install torch==2.7.1 torchvision==0.22.1 torchaudio==2.7.1 --index-url https://download.pytorch.org/whl/rocm6.3 --system
+RUN uv pip install openvino-dev opencv-python-headless --system
 
 # Do some dependency installation separately here to make layer caching more efficient
 COPY ./setup.py ./setup.py
 RUN python3.11 -c "from setup import requirements; file = open('requirements.txt', 'w'); file.writelines([req + '\n' for req in requirements]); file.close()" \
-  && python3.11 -m pip install -r ./requirements.txt
+  && uv pip install -r ./requirements.txt --system
 
 COPY . /GaNDLF
 WORKDIR /GaNDLF
-RUN python3.11 -m pip install -e .
+RUN uv pip install -e . --system
 
 # Entrypoint forces all commands given via "docker run" to go through python, CMD forces the default entrypoint script argument to be gandlf run
 # If a user calls "docker run gandlf:[tag] anonymize", it will resolve to running "gandlf anonymize" instead.

gandlf-0.1.6.dev20250816/GANDLF/version.py

@@ -0,0 +1 @@
+__version__ = "0.1.6-dev20250816"

{gandlf-0.1.6.dev20250815 → gandlf-0.1.6.dev20250816}/GANDLF.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: GANDLF
-Version: 0.1.6.dev20250815
+Version: 0.1.6.dev20250816
 Summary: PyTorch-based framework that handles segmentation/regression/classification using various DL architectures for medical imaging.
 Author: MLCommons
 Author-email: gandlf@mlcommons.org

{gandlf-0.1.6.dev20250815 → gandlf-0.1.6.dev20250816}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: GANDLF
-Version: 0.1.6.dev20250815
+Version: 0.1.6.dev20250816
 Summary: PyTorch-based framework that handles segmentation/regression/classification using various DL architectures for medical imaging.
 Author: MLCommons
 Author-email: gandlf@mlcommons.org

gandlf-0.1.6.dev20250815/GANDLF/version.py

@@ -1 +0,0 @@
-__version__ = "0.1.6-dev20250815"