GANDLF 0.1.4.dev20250708__tar.gz → 0.1.5.dev20250710__tar.gz

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  1. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/metrics/segmentation_panoptica.py +4 -0
  2. gandlf-0.1.5.dev20250710/GANDLF/version.py +1 -0
  3. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF.egg-info/PKG-INFO +1 -1
  4. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/PKG-INFO +1 -1
  5. gandlf-0.1.4.dev20250708/GANDLF/version.py +0 -1
  6. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/.dockerignore +0 -0
  7. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/CODE_OF_CONDUCT.md +0 -0
  8. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/CONTRIBUTING.md +0 -0
  9. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/Dockerfile-CPU +0 -0
  10. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/Dockerfile-CUDA11.8 +0 -0
  11. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/Dockerfile-CUDA12.1 +0 -0
  12. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/Dockerfile-ROCm +0 -0
  13. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/__init__.py +0 -0
  14. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/anonymize/__init__.py +0 -0
  15. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/anonymize/convert_to_nifti.py +0 -0
  16. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/cli/__init__.py +0 -0
  17. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/cli/config_generator.py +0 -0
  18. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/cli/data_split_saver.py +0 -0
  19. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/cli/deploy.py +0 -0
  20. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/cli/generate_metrics.py +0 -0
  21. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/cli/huggingface_hub_handler.py +0 -0
  22. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/cli/main_run.py +0 -0
  23. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/cli/patch_extraction.py +0 -0
  24. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/cli/post_training_model_optimization.py +0 -0
  25. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/cli/preprocess_and_save.py +0 -0
  26. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/cli/recover_config.py +0 -0
  27. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/compute/__init__.py +0 -0
  28. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/compute/forward_pass.py +0 -0
  29. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/compute/generic.py +0 -0
  30. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/compute/inference_loop.py +0 -0
  31. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/compute/loss_and_metric.py +0 -0
  32. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/compute/step.py +0 -0
  33. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/compute/training_loop.py +0 -0
  34. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/config_manager.py +0 -0
  35. {gandlf-0.1.4.dev20250708/GANDLF/privacy → gandlf-0.1.5.dev20250710/GANDLF/configuration}/__init__.py +0 -0
  36. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/configuration/default_config.py +0 -0
  37. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/configuration/differential_privacy_config.py +0 -0
  38. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/configuration/exclude_parameters.py +0 -0
  39. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/configuration/model_config.py +0 -0
  40. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/configuration/nested_training_config.py +0 -0
  41. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/configuration/optimizer_config.py +0 -0
  42. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/configuration/parameters_config.py +0 -0
  43. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/configuration/patch_sampler_config.py +0 -0
  44. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/configuration/post_processing_config.py +0 -0
  45. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/configuration/pre_processing_config.py +0 -0
  46. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/configuration/scheduler_config.py +0 -0
  47. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/configuration/user_defined_config.py +0 -0
  48. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/configuration/utils.py +0 -0
  49. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/configuration/validators.py +0 -0
  50. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/ImagesFromDataFrame.py +0 -0
  51. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/__init__.py +0 -0
  52. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/augmentation/__init__.py +0 -0
  53. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/augmentation/blur_enhanced.py +0 -0
  54. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/augmentation/hed_augs.py +0 -0
  55. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/augmentation/noise_enhanced.py +0 -0
  56. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/augmentation/rgb_augs.py +0 -0
  57. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/augmentation/rotations.py +0 -0
  58. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/augmentation/wrap_torchio.py +0 -0
  59. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/inference_dataloader_histopath.py +0 -0
  60. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/lightning_datamodule.py +0 -0
  61. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/patch_miner/__init__.py +0 -0
  62. {gandlf-0.1.4.dev20250708/GANDLF/models/seg_modules → gandlf-0.1.5.dev20250710/GANDLF/data/patch_miner/opm}/__init__.py +0 -0
  63. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/patch_miner/opm/patch.py +0 -0
  64. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/patch_miner/opm/patch_manager.py +0 -0
  65. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/patch_miner/opm/utils.py +0 -0
  66. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/post_process/__init__.py +0 -0
  67. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/post_process/morphology.py +0 -0
  68. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/post_process/tensor.py +0 -0
  69. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/preprocessing/__init__.py +0 -0
  70. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/preprocessing/crop_zero_planes.py +0 -0
  71. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/preprocessing/non_zero_normalize.py +0 -0
  72. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/preprocessing/normalize_rgb.py +0 -0
  73. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/preprocessing/resample_minimum.py +0 -0
  74. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/preprocessing/rgb_conversion.py +0 -0
  75. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/preprocessing/template_matching/__init__.py +0 -0
  76. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/preprocessing/template_matching/base.py +0 -0
  77. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/preprocessing/template_matching/histogram_matching.py +0 -0
  78. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/preprocessing/template_matching/stain_extractors.py +0 -0
  79. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/preprocessing/template_matching/stain_normalizer.py +0 -0
  80. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/preprocessing/template_matching/utils.py +0 -0
  81. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/data/preprocessing/threshold_and_clip.py +0 -0
  82. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/__init__.py +0 -0
  83. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/anonymizer.py +0 -0
  84. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/cli_tool.py +0 -0
  85. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/collect_stats.py +0 -0
  86. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/config_generator.py +0 -0
  87. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/construct_csv.py +0 -0
  88. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/debug_info.py +0 -0
  89. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/deploy.py +0 -0
  90. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/generate_metrics.py +0 -0
  91. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/hf_hub_integration.py +0 -0
  92. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/optimize_model.py +0 -0
  93. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/patch_miner.py +0 -0
  94. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/preprocess.py +0 -0
  95. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/recover_config.py +0 -0
  96. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/run.py +0 -0
  97. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/split_csv.py +0 -0
  98. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/subcommands.py +0 -0
  99. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/entrypoints/verify_install.py +0 -0
  100. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/grad_clipping/__init__.py +0 -0
  101. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/grad_clipping/adaptive_gradient_clipping.py +0 -0
  102. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/grad_clipping/clip_gradients.py +0 -0
  103. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/grad_clipping/grad_scaler.py +0 -0
  104. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/inference_manager.py +0 -0
  105. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/logger.py +0 -0
  106. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/logging_config.yaml +0 -0
  107. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/losses/__init__.py +0 -0
  108. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/losses/hybrid.py +0 -0
  109. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/losses/hybrid_new.py +0 -0
  110. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/losses/loss_calculators.py +0 -0
  111. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/losses/loss_interface.py +0 -0
  112. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/losses/regression.py +0 -0
  113. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/losses/regression_new.py +0 -0
  114. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/losses/segmentation.py +0 -0
  115. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/losses/segmentation_new.py +0 -0
  116. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/metrics/__init__.py +0 -0
  117. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/metrics/classification.py +0 -0
  118. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/metrics/generic.py +0 -0
  119. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/metrics/metric_calculators.py +0 -0
  120. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/metrics/panoptica_config_brats.yaml +0 -0
  121. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/metrics/regression.py +0 -0
  122. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/metrics/segmentation.py +0 -0
  123. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/metrics/synthesis.py +0 -0
  124. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/MSDNet.py +0 -0
  125. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/__init__.py +0 -0
  126. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/brain_age.py +0 -0
  127. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/deep_unet.py +0 -0
  128. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/densenet.py +0 -0
  129. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/dynunet_wrapper.py +0 -0
  130. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/efficientnet.py +0 -0
  131. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/fcn.py +0 -0
  132. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/imagenet_unet.py +0 -0
  133. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/imagenet_vgg.py +0 -0
  134. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/light_unet.py +0 -0
  135. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/light_unet_multilayer.py +0 -0
  136. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/lightning_module.py +0 -0
  137. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/modelBase.py +0 -0
  138. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/resnet.py +0 -0
  139. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/sdnet.py +0 -0
  140. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/DecodingModule.py +0 -0
  141. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/DownsamplingModule.py +0 -0
  142. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/EncodingModule.py +0 -0
  143. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/FCNUpsamplingModule.py +0 -0
  144. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/IncConv.py +0 -0
  145. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/IncDownsamplingModule.py +0 -0
  146. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/IncDropout.py +0 -0
  147. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/IncUpsamplingModule.py +0 -0
  148. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/InceptionModule.py +0 -0
  149. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/InitialConv.py +0 -0
  150. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/Interpolate.py +0 -0
  151. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/ResNetModule.py +0 -0
  152. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/UpsamplingModule.py +0 -0
  153. {gandlf-0.1.4.dev20250708/GANDLF/data/patch_miner/opm → gandlf-0.1.5.dev20250710/GANDLF/models/seg_modules}/__init__.py +0 -0
  154. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/add_conv_block.py +0 -0
  155. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/add_downsample_conv_block.py +0 -0
  156. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/average_pool.py +0 -0
  157. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/seg_modules/out_conv.py +0 -0
  158. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/transunet.py +0 -0
  159. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/uinc.py +0 -0
  160. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/unet.py +0 -0
  161. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/unet_multilayer.py +0 -0
  162. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/unetr.py +0 -0
  163. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/models/vgg.py +0 -0
  164. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/optimizers/__init__.py +0 -0
  165. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/optimizers/thirdparty/__init__.py +0 -0
  166. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/optimizers/thirdparty/ademamix.py +0 -0
  167. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/optimizers/thirdparty/adopt.py +0 -0
  168. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/optimizers/thirdparty/lion.py +0 -0
  169. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/optimizers/wrap_monai.py +0 -0
  170. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/optimizers/wrap_torch.py +0 -0
  171. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/parseConfig.py +0 -0
  172. {gandlf-0.1.4.dev20250708/GANDLF/configuration → gandlf-0.1.5.dev20250710/GANDLF/privacy}/__init__.py +0 -0
  173. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/privacy/opacus/__init__.py +0 -0
  174. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/privacy/opacus/config_parsing.py +0 -0
  175. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/privacy/opacus/model_handling.py +0 -0
  176. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/privacy/opacus/opacus_anonymization_manager.py +0 -0
  177. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/privacy/opacus/training_utils.py +0 -0
  178. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/schedulers/__init__.py +0 -0
  179. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/schedulers/wrap_monai.py +0 -0
  180. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/schedulers/wrap_torch.py +0 -0
  181. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/training_manager.py +0 -0
  182. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/utils/__init__.py +0 -0
  183. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/utils/data_splitter.py +0 -0
  184. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/utils/exceptions.py +0 -0
  185. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/utils/gandlf_logging.py +0 -0
  186. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/utils/generic.py +0 -0
  187. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/utils/handle_collisions.py +0 -0
  188. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/utils/imaging.py +0 -0
  189. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/utils/modelbase.py +0 -0
  190. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/utils/modelio.py +0 -0
  191. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/utils/parameter_processing.py +0 -0
  192. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/utils/pred_target_processors.py +0 -0
  193. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/utils/tensor.py +0 -0
  194. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/utils/write_parse.py +0 -0
  195. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF.egg-info/SOURCES.txt +0 -0
  196. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF.egg-info/dependency_links.txt +0 -0
  197. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF.egg-info/entry_points.txt +0 -0
  198. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF.egg-info/not-zip-safe +0 -0
  199. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF.egg-info/requires.txt +0 -0
  200. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF.egg-info/top_level.txt +0 -0
  201. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/LICENSE +0 -0
  202. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/MANIFEST.in +0 -0
  203. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/README.md +0 -0
  204. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/SECURITY.md +0 -0
  205. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/setup.cfg +0 -0
  206. {gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/setup.py +0 -0
{gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF/metrics/segmentation_panoptica.py RENAMED
@@ -1,4 +1,5 @@
1
1
  from pathlib import Path
2
+ import os
2
3
 
3
4
  from typing import Optional
4
5
  import numpy as np
@@ -19,12 +20,15 @@ def generate_instance_segmentation(
19
20
  prediction (np.ndarray): The input prediction containing objects.
20
21
  label_path (str): The path to the reference label.
21
22
  target (np.ndarray): The input target containing objects.
23
+ parameters (dict): The GaNDLF parameters from which panoptica config is to be extracted.
22
24
  panoptica_config_path (str): The path to the Panoptica configuration file.
23
25
 
24
26
  Returns:
25
27
  dict: The evaluation results.
26
28
  """
27
29
 
30
+ os.environ["PANOPTICA_CITATION_REMINDER"] = "False"
31
+
28
32
  # the parameters dict takes precedence over the panoptica_config_path
29
33
  evaluator = parameters.get("panoptica_config", None)
30
34
  if evaluator is None:
gandlf-0.1.5.dev20250710/GANDLF/version.py ADDED
@@ -0,0 +1 @@
1
+ __version__ = "0.1.5-dev20250710"
{gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/GANDLF.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: GANDLF
3
- Version: 0.1.4.dev20250708
3
+ Version: 0.1.5.dev20250710
4
4
  Summary: PyTorch-based framework that handles segmentation/regression/classification using various DL architectures for medical imaging.
5
5
  Author: MLCommons
6
6
  Author-email: gandlf@mlcommons.org
{gandlf-0.1.4.dev20250708 → gandlf-0.1.5.dev20250710}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: GANDLF
3
- Version: 0.1.4.dev20250708
3
+ Version: 0.1.5.dev20250710
4
4
  Summary: PyTorch-based framework that handles segmentation/regression/classification using various DL architectures for medical imaging.
5
5
  Author: MLCommons
6
6
  Author-email: gandlf@mlcommons.org
gandlf-0.1.4.dev20250708/GANDLF/version.py DELETED
@@ -1 +0,0 @@
1
- __version__ = "0.1.4-dev20250708"