FunVIP 0.3.23.2__tar.gz → 0.3.23.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (219) hide show
  1. {funvip-0.3.23.2 → funvip-0.3.23.4}/FunVIP.egg-info/PKG-INFO +2 -2
  2. {funvip-0.3.23.2 → funvip-0.3.23.4}/PKG-INFO +2 -2
  3. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/src/validate_input.py +2 -2
  4. {funvip-0.3.23.2 → funvip-0.3.23.4}/pyproject.toml +2 -2
  5. {funvip-0.3.23.2 → funvip-0.3.23.4}/FunVIP.egg-info/SOURCES.txt +0 -0
  6. {funvip-0.3.23.2 → funvip-0.3.23.4}/FunVIP.egg-info/dependency_links.txt +0 -0
  7. {funvip-0.3.23.2 → funvip-0.3.23.4}/FunVIP.egg-info/entry_points.txt +0 -0
  8. {funvip-0.3.23.2 → funvip-0.3.23.4}/FunVIP.egg-info/requires.txt +0 -0
  9. {funvip-0.3.23.2 → funvip-0.3.23.4}/FunVIP.egg-info/top_level.txt +0 -0
  10. {funvip-0.3.23.2 → funvip-0.3.23.4}/LICENSE +0 -0
  11. {funvip-0.3.23.2 → funvip-0.3.23.4}/MANIFEST.in +0 -0
  12. {funvip-0.3.23.2 → funvip-0.3.23.4}/README.md +0 -0
  13. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/FunVIP_GUI.py +0 -0
  14. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/__init__.py +0 -0
  15. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/data/Option_manager.xlsx +0 -0
  16. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/data/__init__.py +0 -0
  17. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/data/genus_line.txt +0 -0
  18. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe +0 -0
  19. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/BLAST_Windows/bin/blastn.exe +0 -0
  20. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py +0 -0
  21. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/BLAST_Windows/bin/get_species_taxids.sh +0 -0
  22. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/BLAST_Windows/bin/legacy_blast.pl +0 -0
  23. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/BLAST_Windows/bin/makeblastdb.exe +0 -0
  24. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/BLAST_Windows/bin/nghttp2.dll +0 -0
  25. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/BLAST_Windows/bin/update_blastdb.pl +0 -0
  26. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/BLAST_Windows/doc/README.txt +0 -0
  27. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/FastTree_Windows/FastTree.exe +0 -0
  28. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html +0 -0
  29. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe +0 -0
  30. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir +0 -0
  31. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir +0 -0
  32. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir +0 -0
  33. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir +0 -0
  34. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir +0 -0
  35. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths +0 -0
  36. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/MAFFT_LICENSE +0 -0
  37. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/MAFFT_Windows.zip +0 -0
  38. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/RAxML_Windows/GPL-3.0.txt +0 -0
  39. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/RAxML_Windows/README +0 -0
  40. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe +0 -0
  41. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/__init__.py +0 -0
  42. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/iqtree/bin/iqtree2-click.exe +0 -0
  43. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/iqtree/bin/iqtree2.exe +0 -0
  44. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/iqtree/bin/libiomp5md.dll +0 -0
  45. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/iqtree/example.cf +0 -0
  46. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/iqtree/example.nex +0 -0
  47. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/iqtree/example.phy +0 -0
  48. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/iqtree/models.nex +0 -0
  49. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/LICENSE.md +0 -0
  50. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/README.md +0 -0
  51. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/bin/busybox.exe +0 -0
  52. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/bin/cygbz2-1.dll +0 -0
  53. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll +0 -0
  54. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/bin/cyggomp-1.dll +0 -0
  55. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/bin/cygstdc++-6.dll +0 -0
  56. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/bin/cygwin1.dll +0 -0
  57. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/bin/cygz.dll +0 -0
  58. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/bin/mmseqs.exe +0 -0
  59. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/examples/QUERY.fasta +0 -0
  60. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM10.out +0 -0
  61. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM100.out +0 -0
  62. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM110.out +0 -0
  63. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM120.out +0 -0
  64. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM130.out +0 -0
  65. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM140.out +0 -0
  66. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM150.out +0 -0
  67. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM160.out +0 -0
  68. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM170.out +0 -0
  69. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM180.out +0 -0
  70. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM190.out +0 -0
  71. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM20.out +0 -0
  72. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM30.out +0 -0
  73. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM40.out +0 -0
  74. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM50.out +0 -0
  75. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM60.out +0 -0
  76. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM70.out +0 -0
  77. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM80.out +0 -0
  78. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/PAM90.out +0 -0
  79. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/VTML10.out +0 -0
  80. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/VTML120.out +0 -0
  81. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/VTML160.out +0 -0
  82. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/VTML20.out +0 -0
  83. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/VTML40.out +0 -0
  84. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/VTML80.out +0 -0
  85. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum100.out +0 -0
  86. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum30.out +0 -0
  87. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum35.out +0 -0
  88. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum40.out +0 -0
  89. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum45.out +0 -0
  90. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum50.out +0 -0
  91. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum55.out +0 -0
  92. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum60.out +0 -0
  93. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum62.out +0 -0
  94. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum65.out +0 -0
  95. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum70.out +0 -0
  96. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum75.out +0 -0
  97. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum80.out +0 -0
  98. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum85.out +0 -0
  99. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum90.out +0 -0
  100. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/blosum95.out +0 -0
  101. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/matrices/nucleotide.out +0 -0
  102. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/mmseqs.bat +0 -0
  103. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/mmseqs_Windows/util/bash-completion.sh +0 -0
  104. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/AUTHORS +0 -0
  105. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/CHANGELOG +0 -0
  106. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/LICENSE +0 -0
  107. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/README +0 -0
  108. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/bin/libgcc_s_dw2-1.dll +0 -0
  109. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/bin/libstdc++-6.dll +0 -0
  110. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/bin/trimal.exe +0 -0
  111. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/scripts/check_codon_alignments.py +0 -0
  112. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/scripts/compare_trimmed_msas.sh +0 -0
  113. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/scripts/generateRandomAlignmentsUsingAsSeedRealAlignments.py +0 -0
  114. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/scripts/generate_trimmed_msas.sh +0 -0
  115. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/scripts/get_sequence_representative_from_alignment.py +0 -0
  116. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/scripts/get_sequences_gaps_ratio.py +0 -0
  117. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/scripts/remove_shorter_sequences.py +0 -0
  118. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/scripts/selective_trimming_for_dNdS_analyses.based_neighbours.py +0 -0
  119. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/scripts/set_manual_boundaries.py +0 -0
  120. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/alignment.cpp +0 -0
  121. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/alignment.h +0 -0
  122. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/alignment.o +0 -0
  123. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/autAlignment.cpp +0 -0
  124. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/autAlignment.o +0 -0
  125. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/compareFiles.cpp +0 -0
  126. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/compareFiles.h +0 -0
  127. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/compareFiles.o +0 -0
  128. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/defines.h +0 -0
  129. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/main.cpp +0 -0
  130. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/makefile +0 -0
  131. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/makefile.MacOS +0 -0
  132. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/readAl.cpp +0 -0
  133. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/readal.exe +0 -0
  134. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/rwAlignment.cpp +0 -0
  135. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/rwAlignment.o +0 -0
  136. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.cpp +0 -0
  137. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.h +0 -0
  138. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/sequencesMatrix.o +0 -0
  139. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.cpp +0 -0
  140. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.h +0 -0
  141. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/similarityMatrix.o +0 -0
  142. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/statAl.cpp +0 -0
  143. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/statal.exe +0 -0
  144. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.cpp +0 -0
  145. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.h +0 -0
  146. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/statisticsConservation.o +0 -0
  147. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.cpp +0 -0
  148. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/statisticsFiles.h +0 -0
  149. {funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/external/trimal.v1.4/trimAl/source/statisticsGaps.cpp +0 -0
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{funvip-0.3.23.2 → funvip-0.3.23.4}/FunVIP.egg-info/PKG-INFO RENAMED
@@ -1,11 +1,11 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: FunVIP
3
- Version: 0.3.23.2
3
+ Version: 0.3.23.4
4
4
  Summary: Fungal Validation & Identification Pipeline
5
5
  Author-email: Changwan Seo <wan101010@snu.ac.kr>
6
6
  License: GPL-3.0
7
7
  Project-URL: Homepage, https://github.com/Changwanseo/FunVIP
8
- Requires-Python: <=3.12,>=3.9
8
+ Requires-Python: <3.13,>=3.9
9
9
  License-File: LICENSE
10
10
  Requires-Dist: biopython==1.84
11
11
  Requires-Dist: ete3==3.1.3
{funvip-0.3.23.2 → funvip-0.3.23.4}/PKG-INFO RENAMED
@@ -1,11 +1,11 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: FunVIP
3
- Version: 0.3.23.2
3
+ Version: 0.3.23.4
4
4
  Summary: Fungal Validation & Identification Pipeline
5
5
  Author-email: Changwan Seo <wan101010@snu.ac.kr>
6
6
  License: GPL-3.0
7
7
  Project-URL: Homepage, https://github.com/Changwanseo/FunVIP
8
- Requires-Python: <=3.12,>=3.9
8
+ Requires-Python: <3.13,>=3.9
9
9
  License-File: LICENSE
10
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  Requires-Dist: biopython==1.84
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  Requires-Dist: ete3==3.1.3
{funvip-0.3.23.2 → funvip-0.3.23.4}/funvip/src/validate_input.py RENAMED
@@ -70,9 +70,9 @@ class Funinfo:
70
70
  if gene in self.seq:
71
71
  error = f"In {self.source}, More than 1 sequence for {gene} found for {self.id} during update_seqrecord"
72
72
  elif gene is None:
73
- self.unclassified_seq.append(str(seq.seq.ungap("-")))
73
+ self.unclassified_seq.append(str(seq.seq).replace("-", ""))
74
74
  else:
75
- self.seq[gene] = str(seq.seq.ungap("-"))
75
+ self.seq[gene] = str(seq.seq).replace("-", "")
76
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77
77
  self.bygene_species[gene] = self.ori_species
78
78
 
{funvip-0.3.23.2 → funvip-0.3.23.4}/pyproject.toml RENAMED
@@ -1,10 +1,10 @@
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  [project]
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  name = "FunVIP"
3
- version = "0.3.23.2"
3
+ version = "0.3.23.4"
4
4
  description = "Fungal Validation & Identification Pipeline"
5
5
  authors = [{name = "Changwan Seo", email = "wan101010@snu.ac.kr"}]
6
6
  urls = { "Homepage" = "https://github.com/Changwanseo/FunVIP" }
7
- requires-python = ">=3.9, <=3.12"
7
+ requires-python = ">=3.9, <3.13"
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8
  license = {text = "GPL-3.0"}
9
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  dependencies = [
10
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  "biopython==1.84",
{funvip-0.3.23.2 → funvip-0.3.23.4}/LICENSE RENAMED
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