FlowCyPy 0.5.8__tar.gz → 0.5.11__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (144) hide show
  1. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/_version.py +2 -2
  2. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy.egg-info/PKG-INFO +1 -1
  3. {flowcypy-0.5.8 → flowcypy-0.5.11}/PKG-INFO +1 -1
  4. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/tutorials/limit_of_detection.py +5 -0
  5. {flowcypy-0.5.8 → flowcypy-0.5.11}/.flake8 +0 -0
  6. {flowcypy-0.5.8 → flowcypy-0.5.11}/.github/dependabot.yml +0 -0
  7. {flowcypy-0.5.8 → flowcypy-0.5.11}/.github/workflows/deploy_PyPi.yml +0 -0
  8. {flowcypy-0.5.8 → flowcypy-0.5.11}/.github/workflows/deploy_anaconda.yml +0 -0
  9. {flowcypy-0.5.8 → flowcypy-0.5.11}/.github/workflows/deploy_coverage.yml +0 -0
  10. {flowcypy-0.5.8 → flowcypy-0.5.11}/.github/workflows/deploy_documentation.yml +0 -0
  11. {flowcypy-0.5.8 → flowcypy-0.5.11}/.gitignore +0 -0
  12. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/__init__.py +0 -0
  13. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/classifier.py +0 -0
  14. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/coupling_mechanism/__init__.py +0 -0
  15. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/coupling_mechanism/empirical.py +0 -0
  16. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/coupling_mechanism/mie.py +0 -0
  17. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/coupling_mechanism/rayleigh.py +0 -0
  18. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/coupling_mechanism/uniform.py +0 -0
  19. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/cytometer.py +0 -0
  20. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/detector.py +0 -0
  21. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/directories.py +0 -0
  22. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/distribution/__init__.py +0 -0
  23. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/distribution/base_class.py +0 -0
  24. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/distribution/delta.py +0 -0
  25. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/distribution/lognormal.py +0 -0
  26. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/distribution/normal.py +0 -0
  27. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/distribution/particle_size_distribution.py +0 -0
  28. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/distribution/uniform.py +0 -0
  29. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/distribution/weibull.py +0 -0
  30. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/event_correlator.py +0 -0
  31. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/flow_cell.py +0 -0
  32. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/helper.py +0 -0
  33. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/logger.py +0 -0
  34. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/noises.py +0 -0
  35. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/particle_count.py +0 -0
  36. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/peak_locator/__init__.py +0 -0
  37. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/peak_locator/base_class.py +0 -0
  38. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/peak_locator/basic.py +0 -0
  39. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/peak_locator/derivative.py +0 -0
  40. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/peak_locator/moving_average.py +0 -0
  41. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/physical_constant.py +0 -0
  42. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/population.py +0 -0
  43. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/populations_instances.py +0 -0
  44. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/scatterer_collection.py +0 -0
  45. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/source.py +0 -0
  46. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/units.py +0 -0
  47. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/utils.py +0 -0
  48. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy.egg-info/SOURCES.txt +0 -0
  49. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy.egg-info/dependency_links.txt +0 -0
  50. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy.egg-info/requires.txt +0 -0
  51. {flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy.egg-info/top_level.txt +0 -0
  52. {flowcypy-0.5.8 → flowcypy-0.5.11}/LICENSE +0 -0
  53. {flowcypy-0.5.8 → flowcypy-0.5.11}/README.rst +0 -0
  54. {flowcypy-0.5.8 → flowcypy-0.5.11}/Untitled.ipynb +0 -0
  55. {flowcypy-0.5.8 → flowcypy-0.5.11}/developments/doc/internship.pdf +0 -0
  56. {flowcypy-0.5.8 → flowcypy-0.5.11}/developments/scripts/concentration_comparison.py +0 -0
  57. {flowcypy-0.5.8 → flowcypy-0.5.11}/developments/scripts/create_images.py +0 -0
  58. {flowcypy-0.5.8 → flowcypy-0.5.11}/developments/scripts/data_analysis.py +0 -0
  59. {flowcypy-0.5.8 → flowcypy-0.5.11}/developments/scripts/dev_beads_analysis.py +0 -0
  60. {flowcypy-0.5.8 → flowcypy-0.5.11}/developments/scripts/dev_canto.py +0 -0
  61. {flowcypy-0.5.8 → flowcypy-0.5.11}/developments/scripts/dev_classifier.py +0 -0
  62. {flowcypy-0.5.8 → flowcypy-0.5.11}/developments/scripts/dev_shot_noise_check.py +0 -0
  63. {flowcypy-0.5.8 → flowcypy-0.5.11}/developments/scripts/dev_study_on_ri.py +0 -0
  64. {flowcypy-0.5.8 → flowcypy-0.5.11}/developments/scripts/dev_study_on_size.py +0 -0
  65. {flowcypy-0.5.8 → flowcypy-0.5.11}/developments/scripts/dev_temp.py +0 -0
  66. {flowcypy-0.5.8 → flowcypy-0.5.11}/developments/scripts/mat2csv.py +0 -0
  67. {flowcypy-0.5.8 → flowcypy-0.5.11}/developments/scripts/profiler.py +0 -0
  68. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/Makefile +0 -0
  69. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/density_plots/1_populations.py +0 -0
  70. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/density_plots/2_populations.py +0 -0
  71. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/density_plots/3_populations.py +0 -0
  72. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/density_plots/README.rst +0 -0
  73. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/density_plots/custom_populations.py +0 -0
  74. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/extras/README.rst +0 -0
  75. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/extras/distributions.py +0 -0
  76. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/extras/flow_cytometer_signal.py +0 -0
  77. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/extras/full_workflow.py +0 -0
  78. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/extras/scatterer_distribution.py +0 -0
  79. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/noise_sources/README.rst +0 -0
  80. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/noise_sources/dark_current.py +0 -0
  81. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/noise_sources/shot_noise.py +0 -0
  82. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/noise_sources/thermal.py +0 -0
  83. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/tutorials/README.rst +0 -0
  84. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/tutorials/workflow.py +0 -0
  85. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/images/distributions/Delta.png +0 -0
  86. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/images/distributions/LogNormal.png +0 -0
  87. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/images/distributions/Normal.png +0 -0
  88. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/images/distributions/RosinRammler.png +0 -0
  89. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/images/distributions/Uniform.png +0 -0
  90. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/images/distributions/Weibull.png +0 -0
  91. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/images/example_0.png +0 -0
  92. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/images/example_1.png +0 -0
  93. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/images/example_2.png +0 -0
  94. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/images/example_3.png +0 -0
  95. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/images/flow_cytometer.png +0 -0
  96. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/images/logo.png +0 -0
  97. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/make.bat +0 -0
  98. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/_static/default.css +0 -0
  99. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/_static/logo.png +0 -0
  100. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/_static/thumbnail.png +0 -0
  101. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/code/analysis.rst +0 -0
  102. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/code/base.rst +0 -0
  103. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/code/detector.rst +0 -0
  104. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/code/distributions.rst +0 -0
  105. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/code/flow_cell.rst +0 -0
  106. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/code/flow_cytometer.rst +0 -0
  107. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/code/peak_locator.rst +0 -0
  108. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/code/scatterer.rst +0 -0
  109. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/code/source.rst +0 -0
  110. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/code.rst +0 -0
  111. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/conf.py +0 -0
  112. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/examples.rst +0 -0
  113. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/index.rst +0 -0
  114. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/internal/core_components.rst +0 -0
  115. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/internal/getting_started.rst +0 -0
  116. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/internal/objectives/main.rst +0 -0
  117. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/internal/objectives/pre.rst +0 -0
  118. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/internal/objectives/stretch.rst +0 -0
  119. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/internal/prerequisites/index.rst +0 -0
  120. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/internal/prerequisites/mathematics.rst +0 -0
  121. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/internal/prerequisites/optics.rst +0 -0
  122. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/internal/prerequisites/programming.rst +0 -0
  123. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/internal/ressources.rst +0 -0
  124. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/internal/tasks.rst +0 -0
  125. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/internal.rst +0 -0
  126. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/references.rst +0 -0
  127. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/sg_execution_times.rst +0 -0
  128. {flowcypy-0.5.8 → flowcypy-0.5.11}/docs/source/theory.rst +0 -0
  129. {flowcypy-0.5.8 → flowcypy-0.5.11}/meta.yaml +0 -0
  130. {flowcypy-0.5.8 → flowcypy-0.5.11}/notebook.ipynb +0 -0
  131. {flowcypy-0.5.8 → flowcypy-0.5.11}/pyproject.toml +0 -0
  132. {flowcypy-0.5.8 → flowcypy-0.5.11}/setup.cfg +0 -0
  133. {flowcypy-0.5.8 → flowcypy-0.5.11}/tests/__init__.py +0 -0
  134. {flowcypy-0.5.8 → flowcypy-0.5.11}/tests/test_coupling_mechanism.py +0 -0
  135. {flowcypy-0.5.8 → flowcypy-0.5.11}/tests/test_detector_noise.py +0 -0
  136. {flowcypy-0.5.8 → flowcypy-0.5.11}/tests/test_distribution.py +0 -0
  137. {flowcypy-0.5.8 → flowcypy-0.5.11}/tests/test_extra.py +0 -0
  138. {flowcypy-0.5.8 → flowcypy-0.5.11}/tests/test_flow_cytometer.py +0 -0
  139. {flowcypy-0.5.8 → flowcypy-0.5.11}/tests/test_noises.py +0 -0
  140. {flowcypy-0.5.8 → flowcypy-0.5.11}/tests/test_peak_algorithm.py +0 -0
  141. {flowcypy-0.5.8 → flowcypy-0.5.11}/tests/test_peak_analyzer.py +0 -0
  142. {flowcypy-0.5.8 → flowcypy-0.5.11}/tests/test_population.py +0 -0
  143. {flowcypy-0.5.8 → flowcypy-0.5.11}/tests/test_scatterer_distribution.py +0 -0
  144. {flowcypy-0.5.8 → flowcypy-0.5.11}/tests/test_source.py +0 -0
{flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy/_version.py RENAMED
@@ -12,5 +12,5 @@ __version__: str
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  __version_tuple__: VERSION_TUPLE
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  version_tuple: VERSION_TUPLE
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- __version__ = version = '0.5.8'
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- __version_tuple__ = version_tuple = (0, 5, 8)
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+ __version__ = version = '0.5.11'
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+ __version_tuple__ = version_tuple = (0, 5, 11)
{flowcypy-0.5.8 → flowcypy-0.5.11}/FlowCyPy.egg-info/PKG-INFO RENAMED
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  Metadata-Version: 2.1
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  Name: FlowCyPy
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- Version: 0.5.8
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+ Version: 0.5.11
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  Summary: A package for flow-cytometry simulations.
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  Author-email: Martin Poinsinet de Sivry-Houle <martin.poinsinet.de.sivry@gmail.com>
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  License: MIT License
{flowcypy-0.5.8 → flowcypy-0.5.11}/PKG-INFO RENAMED
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  Metadata-Version: 2.1
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  Name: FlowCyPy
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- Version: 0.5.8
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  Summary: A package for flow-cytometry simulations.
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  Author-email: Martin Poinsinet de Sivry-Houle <martin.poinsinet.de.sivry@gmail.com>
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  License: MIT License
{flowcypy-0.5.8 → flowcypy-0.5.11}/docs/examples/tutorials/limit_of_detection.py RENAMED
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+ """
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+ Study on limit of detection
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+ ===========================
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+ """
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  import numpy as np
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  from FlowCyPy import FlowCytometer, ScattererCollection, EventCorrelator, Detector, GaussianBeam, FlowCell
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  from FlowCyPy import peak_locator
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