FlowCyPy 0.5.0__tar.gz → 0.5.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (130) hide show
  1. {flowcypy-0.5.0 → flowcypy-0.5.2}/.github/workflows/deploy_anaconda.yml +1 -1
  2. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/_version.py +2 -2
  3. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy.egg-info/PKG-INFO +2 -2
  4. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy.egg-info/requires.txt +1 -1
  5. {flowcypy-0.5.0 → flowcypy-0.5.2}/PKG-INFO +2 -2
  6. {flowcypy-0.5.0 → flowcypy-0.5.2}/pyproject.toml +1 -1
  7. {flowcypy-0.5.0 → flowcypy-0.5.2}/.condarc +0 -0
  8. {flowcypy-0.5.0 → flowcypy-0.5.2}/.flake8 +0 -0
  9. {flowcypy-0.5.0 → flowcypy-0.5.2}/.github/dependabot.yml +0 -0
  10. {flowcypy-0.5.0 → flowcypy-0.5.2}/.github/workflows/deploy_PyPi.yml +0 -0
  11. {flowcypy-0.5.0 → flowcypy-0.5.2}/.github/workflows/deploy_coverage.yml +0 -0
  12. {flowcypy-0.5.0 → flowcypy-0.5.2}/.github/workflows/deploy_documentation.yml +0 -0
  13. {flowcypy-0.5.0 → flowcypy-0.5.2}/.gitignore +0 -0
  14. {flowcypy-0.5.0 → flowcypy-0.5.2}/.readthedocs.yml +0 -0
  15. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/__init__.py +0 -0
  16. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/classifier.py +0 -0
  17. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/coupling_mechanism/__init__.py +0 -0
  18. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/coupling_mechanism/empirical.py +0 -0
  19. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/coupling_mechanism/mie.py +0 -0
  20. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/coupling_mechanism/rayleigh.py +0 -0
  21. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/coupling_mechanism/uniform.py +0 -0
  22. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/cytometer.py +0 -0
  23. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/detector.py +0 -0
  24. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/directories.py +0 -0
  25. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/distribution/__init__.py +0 -0
  26. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/distribution/base_class.py +0 -0
  27. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/distribution/delta.py +0 -0
  28. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/distribution/lognormal.py +0 -0
  29. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/distribution/normal.py +0 -0
  30. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/distribution/particle_size_distribution.py +0 -0
  31. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/distribution/uniform.py +0 -0
  32. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/distribution/weibull.py +0 -0
  33. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/event_correlator.py +0 -0
  34. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/flow_cell.py +0 -0
  35. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/helper.py +0 -0
  36. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/logger.py +0 -0
  37. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/noises.py +0 -0
  38. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/particle_count.py +0 -0
  39. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/peak_locator/__init__.py +0 -0
  40. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/peak_locator/base_class.py +0 -0
  41. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/peak_locator/basic.py +0 -0
  42. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/peak_locator/derivative.py +0 -0
  43. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/peak_locator/moving_average.py +0 -0
  44. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/physical_constant.py +0 -0
  45. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/plottings.py +0 -0
  46. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/population.py +0 -0
  47. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/populations_instances.py +0 -0
  48. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/report.py +0 -0
  49. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/scatterer.py +0 -0
  50. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/source.py +0 -0
  51. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/units.py +0 -0
  52. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/utils.py +0 -0
  53. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy.egg-info/SOURCES.txt +0 -0
  54. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy.egg-info/dependency_links.txt +0 -0
  55. {flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy.egg-info/top_level.txt +0 -0
  56. {flowcypy-0.5.0 → flowcypy-0.5.2}/LICENSE +0 -0
  57. {flowcypy-0.5.0 → flowcypy-0.5.2}/README.rst +0 -0
  58. {flowcypy-0.5.0 → flowcypy-0.5.2}/Untitled.ipynb +0 -0
  59. {flowcypy-0.5.0 → flowcypy-0.5.2}/developments/dev_beads_analysis.py +0 -0
  60. {flowcypy-0.5.0 → flowcypy-0.5.2}/developments/dev_canto.py +0 -0
  61. {flowcypy-0.5.0 → flowcypy-0.5.2}/developments/dev_classifier.py +0 -0
  62. {flowcypy-0.5.0 → flowcypy-0.5.2}/developments/dev_shot_noise_check.py +0 -0
  63. {flowcypy-0.5.0 → flowcypy-0.5.2}/developments/dev_study_on_ri.py +0 -0
  64. {flowcypy-0.5.0 → flowcypy-0.5.2}/developments/dev_study_on_size.py +0 -0
  65. {flowcypy-0.5.0 → flowcypy-0.5.2}/developments/get_started.md +0 -0
  66. {flowcypy-0.5.0 → flowcypy-0.5.2}/developments/image.png +0 -0
  67. {flowcypy-0.5.0 → flowcypy-0.5.2}/developments/internship.pdf +0 -0
  68. {flowcypy-0.5.0 → flowcypy-0.5.2}/developments/output_file.prof +0 -0
  69. {flowcypy-0.5.0 → flowcypy-0.5.2}/developments/profiler.py +0 -0
  70. {flowcypy-0.5.0 → flowcypy-0.5.2}/developments/test.pdf +0 -0
  71. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/Makefile +0 -0
  72. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/density_plots/1_populations.py +0 -0
  73. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/density_plots/2_populations.py +0 -0
  74. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/density_plots/3_populations.py +0 -0
  75. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/density_plots/README.rst +0 -0
  76. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/density_plots/custom_populations.py +0 -0
  77. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/extras/README.rst +0 -0
  78. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/extras/distributions.py +0 -0
  79. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/extras/flow_cytometer_signal.py +0 -0
  80. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/extras/full_workflow.py +0 -0
  81. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/extras/scatterer_distribution.py +0 -0
  82. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/noise_sources/README.rst +0 -0
  83. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/noise_sources/dark_current.py +0 -0
  84. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/noise_sources/shot_noise.py +0 -0
  85. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/noise_sources/thermal.py +0 -0
  86. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/tutorials/README.rst +0 -0
  87. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/examples/tutorials/workflow.py +0 -0
  88. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/images/example_0.png +0 -0
  89. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/images/example_1.png +0 -0
  90. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/images/example_2.png +0 -0
  91. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/images/example_3.png +0 -0
  92. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/images/flow_cytometer.png +0 -0
  93. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/images/logo.png +0 -0
  94. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/make.bat +0 -0
  95. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/_static/default.css +0 -0
  96. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/_static/logo.png +0 -0
  97. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/_static/thumbnail.png +0 -0
  98. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/code/base.rst +0 -0
  99. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/code/distributions.rst +0 -0
  100. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/code/peak_locator.rst +0 -0
  101. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/code.rst +0 -0
  102. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/conf.py +0 -0
  103. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/examples.rst +0 -0
  104. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/index.rst +0 -0
  105. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/internal/core_components.rst +0 -0
  106. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/internal/getting_started.rst +0 -0
  107. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/internal/prerequisites/index.rst +0 -0
  108. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/internal/prerequisites/mathematics.rst +0 -0
  109. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/internal/prerequisites/optics.rst +0 -0
  110. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/internal/prerequisites/programming.rst +0 -0
  111. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/internal/ressources.rst +0 -0
  112. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/internal/tasks.rst +0 -0
  113. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/internal.rst +0 -0
  114. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/references.rst +0 -0
  115. {flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/theory.rst +0 -0
  116. {flowcypy-0.5.0 → flowcypy-0.5.2}/meta.yaml +0 -0
  117. {flowcypy-0.5.0 → flowcypy-0.5.2}/notebook.ipynb +0 -0
  118. {flowcypy-0.5.0 → flowcypy-0.5.2}/setup.cfg +0 -0
  119. {flowcypy-0.5.0 → flowcypy-0.5.2}/tests/__init__.py +0 -0
  120. {flowcypy-0.5.0 → flowcypy-0.5.2}/tests/test_coupling_mechanism.py +0 -0
  121. {flowcypy-0.5.0 → flowcypy-0.5.2}/tests/test_detector_noise.py +0 -0
  122. {flowcypy-0.5.0 → flowcypy-0.5.2}/tests/test_distribution.py +0 -0
  123. {flowcypy-0.5.0 → flowcypy-0.5.2}/tests/test_extra.py +0 -0
  124. {flowcypy-0.5.0 → flowcypy-0.5.2}/tests/test_flow_cytometer.py +0 -0
  125. {flowcypy-0.5.0 → flowcypy-0.5.2}/tests/test_noises.py +0 -0
  126. {flowcypy-0.5.0 → flowcypy-0.5.2}/tests/test_peak_algorithm.py +0 -0
  127. {flowcypy-0.5.0 → flowcypy-0.5.2}/tests/test_peak_analyzer.py +0 -0
  128. {flowcypy-0.5.0 → flowcypy-0.5.2}/tests/test_population.py +0 -0
  129. {flowcypy-0.5.0 → flowcypy-0.5.2}/tests/test_scatterer_distribution.py +0 -0
  130. {flowcypy-0.5.0 → flowcypy-0.5.2}/tests/test_source.py +0 -0
{flowcypy-0.5.0 → flowcypy-0.5.2}/.github/workflows/deploy_anaconda.yml RENAMED
@@ -15,7 +15,7 @@ jobs:
15
15
  ManyLinux_x86_64:
16
16
  uses: MartinPdeS/MPSActions/.github/workflows/publish_compiled_package_to_anaconda.yml@master
17
17
  with:
18
- python-versions: '["3.11"]'
18
+ python-versions: '["3.11", "3.12"]'
19
19
  secrets:
20
20
  ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_API_TOKEN }}
21
21
 
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/_version.py RENAMED
@@ -12,5 +12,5 @@ __version__: str
12
12
  __version_tuple__: VERSION_TUPLE
13
13
  version_tuple: VERSION_TUPLE
14
14
 
15
- __version__ = version = '0.5.0'
16
- __version_tuple__ = version_tuple = (0, 5, 0)
15
+ __version__ = version = '0.5.2'
16
+ __version_tuple__ = version_tuple = (0, 5, 2)
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: FlowCyPy
3
- Version: 0.5.0
3
+ Version: 0.5.2
4
4
  Summary: A package for flow-cytometry simulations.
5
5
  Author-email: Martin Poinsinet de Sivry-Houle <martin.poinsinet.de.sivry@gmail.com>
6
6
  License: MIT License
@@ -54,7 +54,7 @@ Provides-Extra: testing
54
54
  Requires-Dist: pytest>=0.6; extra == "testing"
55
55
  Requires-Dist: pytest-cov>=2.0; extra == "testing"
56
56
  Requires-Dist: pytest-json-report==1.5.0; extra == "testing"
57
- Requires-Dist: coverage==7.6.7; extra == "testing"
57
+ Requires-Dist: coverage==7.6.9; extra == "testing"
58
58
  Provides-Extra: documentation
59
59
  Requires-Dist: numpydoc==1.8.0; extra == "documentation"
60
60
  Requires-Dist: sphinx>=5.1.1; extra == "documentation"
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy.egg-info/requires.txt RENAMED
@@ -24,4 +24,4 @@ pydata-sphinx-theme==0.16.0
24
24
  pytest>=0.6
25
25
  pytest-cov>=2.0
26
26
  pytest-json-report==1.5.0
27
- coverage==7.6.7
27
+ coverage==7.6.9
{flowcypy-0.5.0 → flowcypy-0.5.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: FlowCyPy
3
- Version: 0.5.0
3
+ Version: 0.5.2
4
4
  Summary: A package for flow-cytometry simulations.
5
5
  Author-email: Martin Poinsinet de Sivry-Houle <martin.poinsinet.de.sivry@gmail.com>
6
6
  License: MIT License
@@ -54,7 +54,7 @@ Provides-Extra: testing
54
54
  Requires-Dist: pytest>=0.6; extra == "testing"
55
55
  Requires-Dist: pytest-cov>=2.0; extra == "testing"
56
56
  Requires-Dist: pytest-json-report==1.5.0; extra == "testing"
57
- Requires-Dist: coverage==7.6.7; extra == "testing"
57
+ Requires-Dist: coverage==7.6.9; extra == "testing"
58
58
  Provides-Extra: documentation
59
59
  Requires-Dist: numpydoc==1.8.0; extra == "documentation"
60
60
  Requires-Dist: sphinx>=5.1.1; extra == "documentation"
{flowcypy-0.5.0 → flowcypy-0.5.2}/pyproject.toml RENAMED
@@ -57,7 +57,7 @@ testing = [
57
57
  "pytest>=0.6",
58
58
  "pytest-cov>=2.0",
59
59
  "pytest-json-report ==1.5.0",
60
- "coverage==7.6.7"
60
+ "coverage==7.6.9"
61
61
  ]
62
62
 
63
63
  documentation = [
{flowcypy-0.5.0 → flowcypy-0.5.2}/.condarc RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/.flake8 RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/.gitignore RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/.readthedocs.yml RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/__init__.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/cytometer.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/detector.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/flow_cell.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/helper.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/logger.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/noises.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/plottings.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/report.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/scatterer.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/source.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/units.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/FlowCyPy/utils.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/LICENSE RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/README.rst RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/Untitled.ipynb RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/developments/test.pdf RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/docs/Makefile RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/docs/images/logo.png RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/docs/make.bat RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/code.rst RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/conf.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/docs/source/index.rst RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/meta.yaml RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/notebook.ipynb RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/setup.cfg RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/tests/__init__.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/tests/test_extra.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/tests/test_noises.py RENAMED
File without changes
{flowcypy-0.5.0 → flowcypy-0.5.2}/tests/test_source.py RENAMED
File without changes