FiPy 4.0.1__tar.gz → 4.0.2__tar.gz

{fipy-4.0.1 → fipy-4.0.2}/FiPy.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: FiPy
-Version: 4.0.1
+Version: 4.0.2
 Summary: A finite volume PDE solver in Python
 Author: Jonathan Guyer, Daniel Wheeler, Jim Warren
 Project-URL: Homepage, https://github.com/usnistgov/fipy
@@ -23,6 +23,7 @@ Requires-Dist: numpy
 Requires-Dist: scipy
 Requires-Dist: matplotlib
 Requires-Dist: typer
+Requires-Dist: typing_extensions
 Dynamic: license-file
 
 .. |.changelog| replace:: Change Log

{fipy-4.0.1 → fipy-4.0.2}/FiPy.egg-info/SOURCES.txt

@@ -7,15 +7,11 @@ INSTALLATION.rst
 LICENSE.rst
 MANIFEST.in
 README.rst
-oldest_python.yml
 pyproject.toml
 setup.cfg
 setup.py
-solver.py
 stdeb.cfg
-test_links.txt
 versioneer.py
-.azure/.DS_Store
 .azure/pipelines.yml
 .azure/templates/install.yml
 .github/workflows/Docs4NIST.yml
@@ -32,7 +28,6 @@ docs/Makefile
 docs/environment.yml
 docs/make.bat
 docs/requirements.txt
-docs/source/.DS_Store
 docs/source/.gitignore
 docs/source/ADMINISTRATA.rst
 docs/source/API.rst
@@ -40,7 +35,6 @@ docs/source/CHANGELOG.rst
 docs/source/CONTACT.rst
 docs/source/CREDITS.rst
 docs/source/DISCLAIMER.rst
-docs/source/DISCLAIMER.tex.txt
 docs/source/EFFICIENCY.rst
 docs/source/EXAMPLES.rst
 docs/source/FAQ.rst
@@ -48,13 +42,11 @@ docs/source/GIT.rst
 docs/source/GUIDELINES.rst
 docs/source/INSTALLATION.rst
 docs/source/LICENSE.rst
-docs/source/LICENSE.tex.txt
 docs/source/NIX-README.rst
 docs/source/PUBLICATIONS.rst
 docs/source/README.rst
 docs/source/SOLVERS.rst
 docs/source/USAGE.rst
-docs/source/Untitled.ipynb
 docs/source/VIEWERS.rst
 docs/source/VKML.rst
 docs/source/conf.py
@@ -72,8 +64,6 @@ docs/source/objects.png
 docs/source/references.rst
 docs/source/refs.bib
 docs/source/requirements.txt
-docs/source/.ipynb_checkpoints/Untitled-checkpoint.ipynb
-docs/source/.jupyter/desktop-workspaces/default-37a8.jupyterlab-workspace
 docs/source/_static/favicon.ico
 docs/source/_static/fipy.bib
 docs/source/_static/fipy.png
@@ -84,8 +74,6 @@ docs/source/_static/solver_convergence.csv
 docs/source/_static/solver_divergence.csv
 docs/source/_static/solver_features.csv
 docs/source/_static/widetable.css
-docs/source/_static/.ipynb_checkpoints/residuals-checkpoint.csv
-docs/source/_static/.ipynb_checkpoints/solver_convergence-checkpoint.csv
 docs/source/_static/examples/cahnHilliard/CH.png
 docs/source/_static/examples/levelSet/electroChem/experimentalSuperfill.png
 docs/source/_static/examples/levelSet/electroChem/superfillImage.png
@@ -94,8 +82,6 @@ docs/source/_templates/empty.tex
 docs/source/_templates/example.rst
 docs/source/_templates/index.html
 docs/source/_templates/indexsidebar.html
-docs/source/_themes/.DS_Store
-docs/source/_themes/nist/.DS_Store
 docs/source/_themes/nist/basic_layout.html
 docs/source/_themes/nist/contact.html
 docs/source/_themes/nist/layout.html
@@ -202,7 +188,6 @@ docs/source/figures/examples/phase/anisotropy.png
 docs/source/figures/examples/phase/polyxtal.png
 docs/source/figures/examples/phase/quaternary.pdf
 docs/source/figures/examples/phase/quaternary.png
-docs/source/figures/examples/phase/binary/.DS_Store
 docs/source/figures/examples/phase/binary/binary-0.000080.pdf
 docs/source/figures/examples/phase/binary/binary-0.000080.png
 docs/source/figures/examples/phase/binary/binary-0.000899.pdf
@@ -280,43 +265,20 @@ environments/locks/conda-scipy-win-64.lock
 environments/locks/conda-trilinos-linux-64.lock
 environments/locks/conda-trilinos-lock.yml
 environments/locks/conda-trilinos-osx-64.lock
-examples/.DS_Store
 examples/README.rst
 examples/__init__.py
 examples/index.ipynb
 examples/parallel.py
 examples/sanitize.cfg
 examples/test.py
-examples/.ipynb_checkpoints/adaptiveSteppingTanh-checkpoint.ipynb
-examples/.ipynb_checkpoints/index-checkpoint.ipynb
-examples/benchmarking/.DS_Store
 examples/benchmarking/__init__.py
 examples/benchmarking/benchmarker.py
 examples/benchmarking/size.py
 examples/benchmarking/steps.py
 examples/benchmarking/utils.py
 examples/benchmarking/versions.py
-examples/benchmarking/solvers/.ipynb_checkpoints/2022-08-31-checkpoint.md
-examples/benchmarking/solvers/.ipynb_checkpoints/Analyze-checkpoint.ipynb
-examples/benchmarking/solvers/.ipynb_checkpoints/README-checkpoint.md
-examples/benchmarking/solvers/.ipynb_checkpoints/compare_1st-checkpoint.log
-examples/benchmarking/solvers/.ipynb_checkpoints/diffusion-checkpoint.ipynb
-examples/benchmarking/solvers/.ipynb_checkpoints/diffusion-checkpoint.py
-examples/benchmarking/solvers/.ipynb_checkpoints/dispatch-checkpoint.sh
-examples/benchmarking/solvers/.ipynb_checkpoints/gpu-checkpoint.log
-examples/benchmarking/solvers/.ipynb_checkpoints/nucleation-checkpoint.ipynb
-examples/benchmarking/solvers/.ipynb_checkpoints/setup-checkpoint.sh
-examples/benchmarking/solvers/.ipynb_checkpoints/solver-checkpoint.log
-examples/benchmarking/solvers/.ipynb_checkpoints/stats-checkpoint.txt
-examples/benchmarking/solvers/codes/loggers/.ipynb_checkpoints/compare_1st_config-checkpoint.json
-examples/benchmarking/solvers/codes/loggers/.ipynb_checkpoints/macos_config-checkpoint.json
-examples/benchmarking/solvers/codes/loggers/.ipynb_checkpoints/serial_config-checkpoint.json
-examples/benchmarking/solvers/codes/notebooks/.ipynb_checkpoints/analyze-checkpoint.ipynb
-examples/benchmarking/solvers/matrices/initial_conditions/nucleation/.ipynb_checkpoints/stats-checkpoint.txt
-examples/cahnHilliard/.DS_Store
 examples/cahnHilliard/__init__.py
 examples/cahnHilliard/mesh2D.py
-examples/cahnHilliard/mesh2D.py~
 examples/cahnHilliard/mesh2DCoupled.py
 examples/cahnHilliard/mesh3D.py
 examples/cahnHilliard/sphere.py
@@ -368,7 +330,6 @@ examples/diffusion/mesh20x20.py
 examples/diffusion/mesh20x20Coupled.py
 examples/diffusion/test.py
 examples/diffusion/variable.py
-examples/diffusion/.ipynb_checkpoints/adaptiveStepping-checkpoint.ipynb
 examples/diffusion/explicit/__init__.py
 examples/diffusion/explicit/mesh1D.py
 examples/diffusion/explicit/mixedelement.py
@@ -410,8 +371,6 @@ examples/flow/__init__.py
 examples/flow/stokesCavity.py
 examples/flow/stokesNonNewtonian.ipynb
 examples/flow/test.py
-examples/flow/.ipynb_checkpoints/stokesNonNewtonian-checkpoint.ipynb
-examples/levelSet/.DS_Store
 examples/levelSet/__init__.py
 examples/levelSet/test.py
 examples/levelSet/advection/__init__.py
@@ -428,7 +387,6 @@ examples/levelSet/distanceFunction/test.py
 examples/levelSet/electroChem/README.rst
 examples/levelSet/electroChem/__init__.py
 examples/levelSet/electroChem/adsorbingSurfactantEquation.py
-examples/levelSet/electroChem/adsorbingSurfactantEquation.py~
 examples/levelSet/electroChem/adsorption.py
 examples/levelSet/electroChem/gapFillDistanceVariable.py
 examples/levelSet/electroChem/gapFillMesh.py
@@ -494,9 +452,7 @@ examples/updating/__init__.py
 examples/updating/update0_1to1_0.py
 examples/updating/update1_0to2_0.py
 examples/updating/update2_0to3_0.py
-fipy/.DS_Store
 fipy/__init__.py
-fipy/__init__.py~
 fipy/_version.py
 fipy/testFiPy.py
 fipy/boundaryConditions/__init__.py
@@ -513,7 +469,6 @@ fipy/matrices/scipyMatrix.py
 fipy/matrices/sparseMatrix.py
 fipy/matrices/test.py
 fipy/matrices/trilinosMatrix.py
-fipy/meshes/.DS_Store
 fipy/meshes/__init__.py
 fipy/meshes/abstractMesh.py
 fipy/meshes/cylindricalGrid1D.py
@@ -560,7 +515,6 @@ fipy/meshes/topologies/__init__.py
 fipy/meshes/topologies/abstractTopology.py
 fipy/meshes/topologies/gridTopology.py
 fipy/meshes/topologies/meshTopology.py
-fipy/solvers/.DS_Store
 fipy/solvers/__init__.py
 fipy/solvers/convergence.py
 fipy/solvers/preconditioner.py
@@ -569,7 +523,6 @@ fipy/solvers/test.py
 fipy/solvers/petsc/__init__.py
 fipy/solvers/petsc/dummySolver.py
 fipy/solvers/petsc/linearBicgSolver.py
-fipy/solvers/petsc/linearBicgstabSolver.py
 fipy/solvers/petsc/linearCGSSolver.py
 fipy/solvers/petsc/linearCGSolver.py
 fipy/solvers/petsc/linearGMRESSolver.py
@@ -688,7 +641,6 @@ fipy/tests/doctestPlus.py
 fipy/tests/lateImportTest.py
 fipy/tests/test.py
 fipy/tests/testProgram.py
-fipy/tools/.DS_Store
 fipy/tools/__init__.py
 fipy/tools/changelog.py
 fipy/tools/copy_script.py
@@ -755,7 +707,6 @@ fipy/variables/test.py
 fipy/variables/unaryOperatorVariable.py
 fipy/variables/uniformNoiseVariable.py
 fipy/variables/variable.py
-fipy/viewers/.DS_Store
 fipy/viewers/__init__.py
 fipy/viewers/multiViewer.py
 fipy/viewers/test.py

{fipy-4.0.1 → fipy-4.0.2}/FiPy.egg-info/requires.txt

@@ -2,3 +2,4 @@ numpy
 scipy
 matplotlib
 typer
+typing_extensions

{fipy-4.0.1 → fipy-4.0.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: FiPy
-Version: 4.0.1
+Version: 4.0.2
 Summary: A finite volume PDE solver in Python
 Author: Jonathan Guyer, Daniel Wheeler, Jim Warren
 Project-URL: Homepage, https://github.com/usnistgov/fipy
@@ -23,6 +23,7 @@ Requires-Dist: numpy
 Requires-Dist: scipy
 Requires-Dist: matplotlib
 Requires-Dist: typer
+Requires-Dist: typing_extensions
 Dynamic: license-file
 
 .. |.changelog| replace:: Change Log

{fipy-4.0.1 → fipy-4.0.2}/docs/source/ADMINISTRATA.rst

@@ -261,13 +261,21 @@ practices`_ above)::
 
     $ git tag --annotate x.y master
 
+Build a local source distribution and wheel::
+
+    $ python -m build
+
+Confirm that the source distribution and wheel will be acceptable to PyPI::
+
+    $ twine check dist/fipy-{x.y}*
+
 Push the tag to GitHub_::
 
     $ git push --tags origin master
 
-Upon successful completion of the `Continuous Integration`_ systems, fetch
-the tagged build products from Azure_ Artifacts and place in
-:file:`{FiPySource}/dist/`:
+*Even though you just built them locally*, upon successful completion of the
+`Continuous Integration`_ systems, fetch the tagged build products from
+Azure_ Artifacts and place in :file:`{FiPySource}/dist/`:
 
  * :file:`dist-Linux/fipy-{x.y}-none-any.whl`
  * :file:`dist-Linux/fipy-{x.y}.tar.gz`

{fipy-4.0.1 → fipy-4.0.2}/docs/source/CHANGELOG.rst

@@ -11,6 +11,29 @@ Change Log
 Version |release|
 -----------------
 
+
+Pulls
+-----
+
+- Add `typing_extensions` to dependencies
+  (`#1181 <https://github.com/usnistgov/fipy/pull/1181>`_)
+
+Fixes
+-----
+
+- `#1167 <https://github.com/usnistgov/fipy/issues/1167>`_:
+  PETSc 3.24 changed convergence reason names
+
+--------------------------
+Version 4.0.1 - 2025-09-16
+--------------------------
+
+Make README acceptable to twine
+
+------------------------
+Version 4.0 - 2025-09-16
+------------------------
+
 This release
 
 - Drops support for :term:`Pysparse`, which required :term:`Python` 2.7.

{fipy-4.0.1 → fipy-4.0.2}/fipy/_version.py

@@ -8,11 +8,11 @@ import json
 
 version_json = '''
 {
- "date": "2025-09-16T14:33:54-0400",
+ "date": "2026-02-25T19:30:23-0500",
  "dirty": false,
  "error": null,
- "full-revisionid": "cde50d51865e894e0f69497f9833486e41793a36",
- "version": "4.0.1"
+ "full-revisionid": "47c4c2f955ebf668409e84bcf01bac45b50eaaab",
+ "version": "4.0.2"
 }
 '''  # END VERSION_JSON
 

{fipy-4.0.1 → fipy-4.0.2}/fipy/solvers/petsc/petscConvergence.py

@@ -36,11 +36,19 @@ class KSP_RelativeToleranceConvergence(RelativeToleranceConvergence):
     suite = "petsc"
 
 class KSP_NormalAbsoluteToleranceConvergence(KSP_AbsoluteToleranceConvergence):
-    status_code = PETSc.KSP.ConvergedReason.CONVERGED_ATOL_NORMAL
+    if hasattr(PETSc.KSP.ConvergedReason, "CONVERGED_ATOL_NORMAL_EQUATIONS"):
+        status_code = PETSc.KSP.ConvergedReason.CONVERGED_ATOL_NORMAL_EQUATIONS
+    else:
+        # CONVERGED_ATOL_NORMAL was deprecated in PETSc 3.24
+        status_code = PETSc.KSP.ConvergedReason.CONVERGED_ATOL_NORMAL
     status_name = "KSP_CONVERGED_ATOL_NORMAL"
 
 class KSP_NormalRelativeToleranceConvergence(KSP_RelativeToleranceConvergence):
-    status_code = PETSc.KSP.ConvergedReason.CONVERGED_RTOL_NORMAL
+    if hasattr(PETSc.KSP.ConvergedReason, "CONVERGED_RTOL_NORMAL_EQUATIONS"):
+        status_code = PETSc.KSP.ConvergedReason.CONVERGED_RTOL_NORMAL_EQUATIONS
+    else:
+        # CONVERGED_RTOL_NORMAL was deprecated in PETSc 3.24
+        status_code = PETSc.KSP.ConvergedReason.CONVERGED_RTOL_NORMAL
     status_name = "KSP_CONVERGED_RTOL_NORMAL"
 
 class KSP_IterationConvergence(IterationConvergence):

{fipy-4.0.1 → fipy-4.0.2}/pyproject.toml

@@ -16,6 +16,7 @@ dependencies = [
     "scipy",
     "matplotlib",
     "typer",
+    "typing_extensions"
 ]
 requires-python = ">=3.7"
 classifiers = [