FiPy 3.99__tar.gz → 4.0.2__tar.gz

fipy-4.0.2/.azure/pipelines.yml

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+# Conda package
+# Create and test a Python package on multiple Python versions.
+# Add steps that analyze code, save the dist with the build record, publish to a PyPI-compatible index, and more:
+# https://docs.microsoft.com/en-us/azure/devops/pipelines/ecosystems/anaconda
+
+# test every commit (implicit branches and explicit tags) for breaking
+# changes in commit
+trigger:
+  tags:
+    include:
+    - '*'
+
+# test master nightly for breaking changes in dependencies
+schedules:
+- cron: "0 0 * * *"
+  displayName: Daily midnight build
+  branches:
+    include:
+    - master
+  always: true
+
+variables:
+  system.debug: true
+  system.log: true
+
+stages:
+  - stage: Analyze
+    dependsOn: []
+    jobs:
+    - job: spelling
+      variables:
+        image: ubuntu-latest
+
+      pool:
+        vmImage: ubuntu-latest
+
+      steps:
+      - template: templates/install.yml
+        parameters:
+          conda_packages: 'hunspell'
+          pip_packages: pyspelling
+
+      - bash: |
+          # cgit.freedesktop.org has been down for weeks without explanation
+          # wget -O en_US.aff  https://cgit.freedesktop.org/libreoffice/dictionaries/plain/en/en_US.aff?id=a4473e06b56bfe35187e302754f6baaa8d75e54f
+          # wget -O en_US.dic https://cgit.freedesktop.org/libreoffice/dictionaries/plain/en/en_US.dic?id=a4473e06b56bfe35187e302754f6baaa8d75e54f
+          wget -O en_US.aff https://raw.githubusercontent.com/freedesktop-unofficial-mirror/libreoffice__dictionaries/master/en/en_US.aff
+          wget -O en_US.dic https://raw.githubusercontent.com/freedesktop-unofficial-mirror/libreoffice__dictionaries/master/en/en_US.dic
+        displayName: Obtain dictionaries
+
+      - bash: |
+          source activate myEnvironment
+          pyspelling
+        displayName: Check spelling
+
+    - job: lint
+      variables:
+        image: ubuntu-latest
+
+      pool:
+        vmImage: ubuntu-latest
+
+      steps:
+      - template: templates/install.yml
+        parameters:
+          conda_packages: 'numpy'
+          pip_packages: pylint
+
+      - bash: |
+          source activate myEnvironment
+          pylint fipy/__init__.py
+        displayName: Check lint
+
+    - job: style
+      variables:
+        image: ubuntu-latest
+
+      pool:
+        vmImage: ubuntu-latest
+
+      steps:
+      - template: templates/install.yml
+        parameters:
+          conda_packages: 'numpy'
+          pip_packages: flake8
+
+      - bash: |
+          source activate myEnvironment
+          flake8 fipy/__init__.py
+        displayName: Check style
+
+  - stage: Test
+    dependsOn: []
+    jobs:
+    - job:
+      strategy:
+        matrix:
+          linux-py3k-petsc:
+            image: ubuntu-latest
+            FIPY_SOLVERS: petsc
+            MPIRUN:
+          linux-py3k-petsc-parallel:
+            image: ubuntu-latest
+            FIPY_SOLVERS: petsc
+            MPIRUN: 'mpirun -np 2'
+          linux-py3k-scipy:
+            image: ubuntu-latest
+            FIPY_SOLVERS: scipy
+            MPIRUN:
+          linux-py3k-trilinos:
+            image: ubuntu-latest
+            FIPY_SOLVERS: trilinos
+            MPIRUN:
+          linux-py3k-trilinos-parallel:
+            image: ubuntu-latest
+            FIPY_SOLVERS: trilinos
+            MPIRUN: 'mpirun -np 2'
+          macos-py3k-petsc:
+            image: macos-latest
+            FIPY_SOLVERS: petsc
+            MPIRUN:
+          macos-py3k-petsc-parallel:
+            image: macos-latest
+            FIPY_SOLVERS: petsc
+            MPIRUN: 'mpirun -np 2'
+          macos-py3k-scipy:
+            image: macos-latest
+            FIPY_SOLVERS: scipy
+            MPIRUN:
+          macos-py3k-trilinos:
+            image: macos-latest
+            FIPY_SOLVERS: trilinos
+            MPIRUN:
+          macos-py3k-trilinos-parallel:
+            image: macos-latest
+            FIPY_SOLVERS: trilinos
+            MPIRUN: 'mpirun -np 2'
+          windows-py3k-scipy:
+            image: windows-latest
+            FIPY_SOLVERS: scipy
+            MPIRUN:
+
+      pool:
+        vmImage: $(image)
+
+      steps:
+      - template: templates/install.yml
+        parameters:
+          solver: $(FIPY_SOLVERS)
+
+      - bash: |
+          source activate myEnvironment
+          # OK if this fails
+          python -m pip install scikit-fmm || true
+        displayName: Install pip packages
+
+      - bash: |
+          source activate myEnvironment
+          python -m pip install .
+          $MPIRUN fipy_test --deprecation-errors --timetests timetests.tsv
+          cat timetests.tsv
+        env:
+          FIPY_SOLVERS: $(FIPY_SOLVERS)
+          MPIRUN: $(MPIRUN)
+          OMP_NUM_THREADS: 1
+          QT_QPA_PLATFORM: offscreen
+        displayName: Test
+
+  - stage: Package
+    dependsOn: []
+    jobs:
+    - job:
+      strategy:
+        matrix:
+          unix:
+            image: ubuntu-latest
+            FIPY_SOLVERS: petsc
+            MPIRUN:
+          windows:
+            image: windows-latest
+            FIPY_SOLVERS: scipy
+            MPIRUN:
+
+      pool:
+        vmImage: $(image)
+
+      steps:
+      - template: templates/install.yml
+        parameters:
+          solver: $(FIPY_SOLVERS)
+
+      - bash: git fetch origin --tags --force
+        displayName: Fetch tags
+
+      - bash: |
+          source activate myEnvironment
+          python3 -m pip install build
+          python3 -m build
+          python3 -m pip install check-wheel-contents
+          check-wheel-contents dist/*.whl
+        displayName: Build sdist and wheel
+
+      - bash: |
+          conda env export --name myEnvironment
+        displayName: Environment
+
+      - bash: |
+          conda create --quiet --name wheelEnvironment --channel conda-forge python
+          source activate wheelEnvironment
+          mkdir -p tmp
+          cd tmp
+          python -m pip install ../dist/*.whl
+          FIPY_SOLVERS=scipy python -c "import fipy; fipy.test()"
+        env:
+          QT_QPA_PLATFORM: offscreen
+          CONDA_PLUGINS_AUTO_ACCEPT_TOS: yes
+        displayName: Test wheel
+
+      - bash: |
+          source activate myEnvironment
+          FIPY_VERSION=`python setup.py --version`
+          mkdir -p tmp
+          cd tmp
+          cp ../dist/fipy-${FIPY_VERSION}.tar.gz .
+          tar zxvf fipy-${FIPY_VERSION}.tar.gz
+          cd fipy-${FIPY_VERSION}
+          python -m pip install .
+          cd ..
+          python -c "import fipy; fipy.test()"
+        env:
+          QT_QPA_PLATFORM: offscreen
+        displayName: Test source
+        condition: startsWith(variables.image, 'ubuntu')
+
+      - publish: $(System.DefaultWorkingDirectory)/dist/
+        artifact: dist-$(Agent.OS)

fipy-4.0.2/.azure/templates/install.yml

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+parameters:
+- name: conda_packages
+  type: string
+  default: ''
+- name: pip_packages
+  type: string
+  default: ''
+- name: solver
+  type: string
+  default: scipy
+
+steps:
+  - bash: |
+      # laggards on Azure/GHA team dropped miniconda on macos images
+      # https://github.com/actions/runner-images/issues/9262
+      mkdir -p ~/miniconda3
+      curl https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -o ~/miniconda3/miniconda.sh
+      bash ~/miniconda3/miniconda.sh -b -u -p ~/miniconda3
+      rm ~/miniconda3/miniconda.sh
+      echo "##vso[task.setvariable variable=CONDA;]${HOME}/miniconda3"
+    displayName: Install miniconda
+    condition: startsWith(variables.image, 'macos')
+
+  - bash: echo "##vso[task.prependpath]$CONDA/bin"
+    displayName: Add conda to PATH
+    condition: or(startsWith(variables.image, 'macos'), startsWith(variables.image, 'ubuntu'))
+
+  - bash: echo "##vso[task.prependpath]$CONDA/Scripts"
+    displayName: Add conda to PATH
+    condition: startsWith(variables.image, 'windows')
+
+  # On Hosted macOS, the agent user doesn't have ownership of Miniconda's installation directory/
+  # We need to take ownership if we want to update conda or install packages globally
+  - bash: sudo chown -R $USER $CONDA
+    displayName: Take ownership of conda installation
+    condition: startsWith(variables.image, 'macos')
+
+  - bash: |
+      sudo apt-get --yes install libglu1-mesa
+      sudo apt-get --yes install libgl1-mesa-glx
+      sudo apt-get --yes install libxrender1
+    displayName: Install libGL
+    condition: startsWith(variables.image, 'ubuntu')
+
+  - bash: |
+      conda config --set always_yes yes --set changeps1 no
+      conda config --remove channels defaults
+      conda config --set solver libmamba
+
+      conda update -n base conda
+
+      conda info
+    displayName: Configure Anaconda
+    env:
+      CONDA_PLUGINS_AUTO_ACCEPT_TOS: yes
+
+  # Most triggered builds use lockfile to ensure failures are
+  # due to commit and not due to dependencies
+  - bash: |
+      conda install --channel=conda-forge --name=base conda-lock
+      conda-lock install --name myEnvironment \
+        environments/locks/conda-${{ parameters.solver }}-lock.yml
+    displayName: Create Anaconda environment from lockfile
+    env:
+      CONDA_PLUGINS_AUTO_ACCEPT_TOS: yes
+    condition: and(ne(variables['Build.CronSchedule.DisplayName'], 'Daily midnight build'),eq(variables['CONDA_ENVIRONMENT_NOT_LOCK'],''))
+
+  # Daily midnight build uses environment.yml files to catch regressions
+  # due to updates in dependencies
+  - bash: |
+      conda env create --name myEnvironment \
+        --file environments/${{ parameters.solver }}-environment.yml
+    displayName: Create Anaconda environment from environments
+    env:
+      CONDA_PLUGINS_AUTO_ACCEPT_TOS: yes
+    condition: or(eq(variables['Build.CronSchedule.DisplayName'], 'Daily midnight build'), ne(variables['CONDA_ENVIRONMENT_NOT_LOCK'],''))
+
+  - bash: |
+      conda env export --name myEnvironment
+    displayName: EnvironmentA
+    env:
+      CONDA_PLUGINS_AUTO_ACCEPT_TOS: yes
+
+  - bash: |
+      if [[ "${{ parameters.conda_packages }}" != "" ]]; then
+        source activate myEnvironment
+        # "Libmamba only supports a subset of the MatchSpec interface for
+        # now.  You can only use ('name', 'version', 'build', 'channel',
+        # 'subdir'), but you tried to use ('md5',)."
+        conda install --solver classic --channel conda-forge ${{ parameters.conda_packages }}
+      fi
+    displayName: Install Anaconda packages
+    env:
+      CONDA_PLUGINS_AUTO_ACCEPT_TOS: yes
+
+  - bash: |
+      conda env export --name myEnvironment
+    displayName: EnvironmentB
+    env:
+      CONDA_PLUGINS_AUTO_ACCEPT_TOS: yes
+
+  - bash: |
+      if [[ "${{ parameters.pip_packages }}" != "" ]]; then
+        source activate myEnvironment
+        python -m pip install ${{ parameters.pip_packages }}
+      fi
+    displayName: Install Pip packages
+
+  - bash: |
+      conda env export --name myEnvironment
+    displayName: Environment
+    env:
+      CONDA_PLUGINS_AUTO_ACCEPT_TOS: yes

fipy-4.0.2/.codacy.yml

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+---
+exclude_paths:
+  - docs/source/_themes/**
+  - versioneer.py
+  - fipy/_version.py