ExposoGraph 0.0.1__tar.gz

exposograph-0.0.1/.claude/settings.local.json

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+{
+  "permissions": {
+    "allow": [
+      "Bash(git init:*)",
+      "Bash(git add:*)",
+      "Bash(git commit:*)",
+      "Bash(python -m pytest tests/ -v)",
+      "Bash(pip install:*)",
+      "Bash(python -c \"import openai; print\\(openai.__version__\\)\")",
+      "Bash(conda list:*)",
+      "Bash(pip list:*)",
+      "Bash(conda run:*)",
+      "Bash(conda install:*)",
+      "WebFetch(domain:www.perplexity.ai)"
+    ]
+  }
+}

exposograph-0.0.1/.github/workflows/ci.yml

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+name: CI
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+jobs:
+  lint:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+      - run: pip install ruff
+      - run: ruff check .
+      - run: ruff format --check .
+
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.10", "3.11", "3.12"]
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+      - run: pip install -e ".[dev]"
+      - run: pytest tests/ -v
+
+  build:
+    runs-on: ubuntu-latest
+    needs: [lint, test]
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+      - run: pip install build
+      - run: python -m build
+      - uses: actions/upload-artifact@v4
+        with:
+          name: dist
+          path: dist/

exposograph-0.0.1/.github/workflows/publish.yml

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+name: Publish to PyPI
+
+on:
+  release:
+    types: [published]
+
+permissions:
+  id-token: write
+
+jobs:
+  publish:
+    runs-on: ubuntu-latest
+    environment: pypi
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+      - run: pip install build
+      - run: python -m build
+      - uses: pypa/gh-action-pypi-publish@release/v1

exposograph-0.0.1/.gitignore

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+# Python
+__pycache__/
+*.py[cod]
+*$py.class
+*.egg-info/
+dist/
+build/
+*.egg
+
+# Virtual environments
+.venv/
+venv/
+env/
+
+# IDE
+.vscode/
+.idea/
+*.swp
+*.swo
+
+# OS
+.DS_Store
+Thumbs.db
+
+# Secrets & env
+.env
+.streamlit/secrets.toml
+
+# Jupyter
+.ipynb_checkpoints/
+
+# Testing
+.pytest_cache/
+.mypy_cache/
+.ruff_cache/
+htmlcov/
+.coverage

exposograph-0.0.1/.pre-commit-config.yaml

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+repos:
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.8.6
+    hooks:
+      - id: ruff
+        args: [--fix]
+      - id: ruff-format

exposograph-0.0.1/.readthedocs.yaml

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+version: 2
+
+build:
+  os: ubuntu-24.04
+  tools:
+    python: "3.11"
+
+sphinx:
+  configuration: docs/conf.py
+
+python:
+  install:
+    - requirements: docs/requirements.txt
+    - method: pip
+      path: .

exposograph-0.0.1/.streamlit/config.toml

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+[theme]
+primaryColor = "#4f98a3"
+backgroundColor = "#ffffff"
+secondaryBackgroundColor = "#f5f7fa"
+textColor = "#262730"
+
+[server]
+headless = true
+maxUploadSize = 10

exposograph-0.0.1/.streamlit/secrets.toml.example

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+# Copy this file to secrets.toml and fill in your keys.
+# For Streamlit Cloud: paste these values in the app's Secrets settings.
+# NEVER commit secrets.toml to version control.
+
+OPENAI_API_KEY = "sk-..."

exposograph-0.0.1/ExposoGraph/__init__.py

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+"""ExposoGraph.
+
+Build, curate, and export carcinogen metabolism knowledge graphs
+using LLM-powered extraction and manual entry.
+
+Parts of this documentation and code were created with assistance
+from ChatGPT Codex and Claude Code.
+"""
+
+from .branding import (
+    APP_NAME,
+    APP_TAGLINE,
+    APP_VERSION,
+    CONTACT_EMAIL,
+    COPYRIGHT_HOLDER,
+    DEVELOPED_BY,
+)
+
+__version__ = APP_VERSION
+
+from .config import AppMode, get_app_mode, normalize_app_mode, persistence_enabled
+from .engine import GraphEngine
+from .exporter import (
+    ensure_viewer_bundle,
+    export_viewer_bundle,
+    parse_graph_artifact,
+    parse_graph_data_text,
+    parse_graph_html,
+    parse_graph_data_js,
+    to_gexf,
+    to_graph_data_js,
+    to_interactive_html,
+    to_interactive_html_string,
+    to_json,
+)
+from .llm_extractor import extract_graph
+from .models import (
+    CurationConfidence,
+    CurationRecord,
+    CurationStatus,
+    Edge,
+    EdgeType,
+    KnowledgeGraph,
+    Node,
+    NodeType,
+    ProvenanceRecord,
+)
+from .reference_data import (
+    ACTIVITY_SCORE_METADATA,
+    ACTIVITY_SCORES,
+    build_full_panel,
+    build_tier1_panel,
+    build_tier2_panel,
+    get_activity_score_metadata,
+    get_activity_score_references,
+    get_activity_scores,
+)
+from .storage import GraphRepository, GraphRevision, GraphRevisionSummary
+
+__all__ = [
+    "ACTIVITY_SCORES",
+    "ACTIVITY_SCORE_METADATA",
+    "APP_NAME",
+    "APP_TAGLINE",
+    "APP_VERSION",
+    "AppMode",
+    "CONTACT_EMAIL",
+    "COPYRIGHT_HOLDER",
+    "CurationConfidence",
+    "CurationRecord",
+    "CurationStatus",
+    "DEVELOPED_BY",
+    "Edge",
+    "EdgeType",
+    "GraphEngine",
+    "GraphRepository",
+    "GraphRevision",
+    "GraphRevisionSummary",
+    "KnowledgeGraph",
+    "Node",
+    "NodeType",
+    "ProvenanceRecord",
+    "ensure_viewer_bundle",
+    "export_viewer_bundle",
+    "parse_graph_artifact",
+    "parse_graph_data_text",
+    "parse_graph_html",
+    "build_full_panel",
+    "build_tier1_panel",
+    "build_tier2_panel",
+    "extract_graph",
+    "get_app_mode",
+    "get_activity_score_metadata",
+    "get_activity_score_references",
+    "get_activity_scores",
+    "normalize_app_mode",
+    "persistence_enabled",
+    "to_interactive_html",
+    "to_interactive_html_string",
+    "parse_graph_data_js",
+    "to_gexf",
+    "to_graph_data_js",
+    "to_json",
+]