ExoIris 1.0.0__tar.gz → 1.1.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (64) hide show
  1. {exoiris-1.0.0 → exoiris-1.1.0}/.github/workflows/python-package.yml +1 -1
  2. {exoiris-1.0.0 → exoiris-1.1.0}/CHANGELOG.md +12 -0
  3. {exoiris-1.0.0 → exoiris-1.1.0}/ExoIris.egg-info/PKG-INFO +1 -1
  4. {exoiris-1.0.0 → exoiris-1.1.0}/ExoIris.egg-info/SOURCES.txt +5 -1
  5. {exoiris-1.0.0 → exoiris-1.1.0}/PKG-INFO +1 -1
  6. {exoiris-1.0.0 → exoiris-1.1.0}/doc/requirements.txt +2 -1
  7. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/e01/01a_not_so_short_intro.ipynb +114 -169
  8. exoiris-1.1.0/doc/source/examples/e01/02_increasing_knot_resolution.ipynb +488 -0
  9. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/setup_multiprocessing.py +4 -5
  10. exoiris-1.1.0/exoiris/bin1d.py +97 -0
  11. exoiris-1.1.0/exoiris/bin2d.py +218 -0
  12. {exoiris-1.0.0 → exoiris-1.1.0}/exoiris/exoiris.py +1 -37
  13. exoiris-1.1.0/exoiris/lmlikelihood.py +172 -0
  14. {exoiris-1.0.0 → exoiris-1.1.0}/exoiris/spotmodel.py +2 -2
  15. {exoiris-1.0.0 → exoiris-1.1.0}/exoiris/tsdata.py +85 -5
  16. {exoiris-1.0.0 → exoiris-1.1.0}/exoiris/tslpf.py +32 -20
  17. {exoiris-1.0.0 → exoiris-1.1.0}/exoiris/util.py +1 -69
  18. exoiris-1.1.0/tests/test_binning.py +300 -0
  19. exoiris-1.1.0/tests/test_import.py +123 -0
  20. exoiris-1.0.0/doc/source/examples/e01/02_increasing_knot_resolution.ipynb +0 -472
  21. exoiris-1.0.0/tests/test_binning.py +0 -50
  22. {exoiris-1.0.0 → exoiris-1.1.0}/.gitignore +0 -0
  23. {exoiris-1.0.0 → exoiris-1.1.0}/.readthedocs.yaml +0 -0
  24. {exoiris-1.0.0 → exoiris-1.1.0}/CODE_OF_CONDUCT.md +0 -0
  25. {exoiris-1.0.0 → exoiris-1.1.0}/ExoIris.egg-info/dependency_links.txt +0 -0
  26. {exoiris-1.0.0 → exoiris-1.1.0}/ExoIris.egg-info/requires.txt +0 -0
  27. {exoiris-1.0.0 → exoiris-1.1.0}/ExoIris.egg-info/top_level.txt +0 -0
  28. {exoiris-1.0.0 → exoiris-1.1.0}/LICENSE +0 -0
  29. {exoiris-1.0.0 → exoiris-1.1.0}/README.md +0 -0
  30. {exoiris-1.0.0 → exoiris-1.1.0}/doc/Makefile +0 -0
  31. {exoiris-1.0.0 → exoiris-1.1.0}/doc/make.bat +0 -0
  32. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/_static/css/custom.css +0 -0
  33. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/api/binning.rst +0 -0
  34. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/api/exoiris.rst +0 -0
  35. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/api/tsdata.rst +0 -0
  36. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/conf.py +0 -0
  37. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/e01/01b_short_intro.ipynb +0 -0
  38. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/e01/03_increasing_data_resolution.ipynb +0 -0
  39. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/e01/04_gaussian_processes.ipynb +0 -0
  40. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/e01/05a_ldtkldm.ipynb +0 -0
  41. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/e01/A2_full_data_resolution.ipynb +0 -0
  42. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/e01/appendix_1_data_preparation.ipynb +0 -0
  43. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/e01/data/README.txt +0 -0
  44. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/e01/data/nirHiss_order_1.h5 +0 -0
  45. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/e01/data/nirHiss_order_2.h5 +0 -0
  46. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/e01/example1.png +0 -0
  47. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/e01/plot_1.ipynb +0 -0
  48. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/figures.ipynb +0 -0
  49. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/friendly_introduction.ipynb +0 -0
  50. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/index.rst +0 -0
  51. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/examples/k_knot_example.svg +0 -0
  52. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/index.rst +0 -0
  53. {exoiris-1.0.0 → exoiris-1.1.0}/doc/source/install.rst +0 -0
  54. {exoiris-1.0.0 → exoiris-1.1.0}/exoiris/__init__.py +0 -0
  55. {exoiris-1.0.0 → exoiris-1.1.0}/exoiris/binning.py +0 -0
  56. {exoiris-1.0.0 → exoiris-1.1.0}/exoiris/ephemeris.py +0 -0
  57. {exoiris-1.0.0 → exoiris-1.1.0}/exoiris/ldtkld.py +0 -0
  58. {exoiris-1.0.0 → exoiris-1.1.0}/exoiris/loglikelihood.py +0 -0
  59. {exoiris-1.0.0 → exoiris-1.1.0}/exoiris/prtretrieval.py +0 -0
  60. {exoiris-1.0.0 → exoiris-1.1.0}/exoiris/tsmodel.py +0 -0
  61. {exoiris-1.0.0 → exoiris-1.1.0}/exoiris/wlpf.py +0 -0
  62. {exoiris-1.0.0 → exoiris-1.1.0}/pyproject.toml +0 -0
  63. {exoiris-1.0.0 → exoiris-1.1.0}/requirements.txt +0 -0
  64. {exoiris-1.0.0 → exoiris-1.1.0}/setup.cfg +0 -0
{exoiris-1.0.0 → exoiris-1.1.0}/.github/workflows/python-package.yml RENAMED
@@ -16,7 +16,7 @@ jobs:
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  strategy:
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  fail-fast: false
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  matrix:
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- python-version: ["3.10", "3.11", "3.12"]
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+ python-version: ["3.10", "3.11", "3.12", "3.13" ]
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  steps:
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  - uses: actions/checkout@v4
{exoiris-1.0.0 → exoiris-1.1.0}/CHANGELOG.md RENAMED
@@ -5,6 +5,18 @@ All notable changes to ExoIris will be documented in this file.
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  The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
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  and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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+ ## [1.1.0] - Unreleased
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+
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+ ### Added
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+ - Added `TSData.create_white_light_curve()` method for creating white light curves with weighted averaging.
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+ - Added `white_profiled` and `white_marginalized` noise model options in TSLPF:
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+ - `white_profiled` (default): computes likelihood with baseline coefficients estimated via least-squares profiling
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+ - `white_marginalized`: uses analytically marginalized log-likelihood that integrates out baseline coefficients
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+ - Added `TSData.bin()` method for combined wavelength and time binning.
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+
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+ ### Fixed
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+ - Several minor bugs.
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+
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  ## [1.0.0] - 2026-01-28
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  ### Added
{exoiris-1.0.0 → exoiris-1.1.0}/ExoIris.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: ExoIris
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- Version: 1.0.0
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+ Version: 1.1.0
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  Summary: Easy and robust exoplanet transmission spectroscopy.
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  Author-email: Hannu Parviainen <hannu@iac.es>
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  License: GPLv3
{exoiris-1.0.0 → exoiris-1.1.0}/ExoIris.egg-info/SOURCES.txt RENAMED
@@ -41,10 +41,13 @@ doc/source/examples/e01/data/README.txt
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  doc/source/examples/e01/data/nirHiss_order_1.h5
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  doc/source/examples/e01/data/nirHiss_order_2.h5
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  exoiris/__init__.py
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+ exoiris/bin1d.py
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+ exoiris/bin2d.py
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  exoiris/binning.py
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  exoiris/ephemeris.py
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  exoiris/exoiris.py
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  exoiris/ldtkld.py
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+ exoiris/lmlikelihood.py
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  exoiris/loglikelihood.py
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  exoiris/prtretrieval.py
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  exoiris/spotmodel.py
@@ -53,4 +56,5 @@ exoiris/tslpf.py
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  exoiris/tsmodel.py
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  exoiris/util.py
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  exoiris/wlpf.py
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- tests/test_binning.py
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+ tests/test_binning.py
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+ tests/test_import.py
{exoiris-1.0.0 → exoiris-1.1.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: ExoIris
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- Version: 1.0.0
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+ Version: 1.1.0
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  Summary: Easy and robust exoplanet transmission spectroscopy.
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  Author-email: Hannu Parviainen <hannu@iac.es>
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  License: GPLv3
{exoiris-1.0.0 → exoiris-1.1.0}/doc/requirements.txt RENAMED
@@ -13,4 +13,5 @@ celerite2
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  pandas
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  xarray
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  seaborn
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- astropy
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+ astropy
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+ scikit-learn