Equimo 2.1.0__tar.gz → 2.3.0__tar.gz

{equimo-2.1.0 → equimo-2.3.0}/CHANGELOG.md

@@ -2,6 +2,67 @@
 
 All notable changes to Equimo are documented here. Equimo follows Semantic Versioning from version 2.0.0 onward.
 
+## [2.3.0] - 2026-09-24
+
+### Added
+
+- Exact spatial and intermediate ViT feature contracts, including patch grids, prefix-token order, normalization stage,
+  positional metadata, and executable `FeatureSpec` endpoint options.
+- A pointwise spatial linear probe with explicit feature geometry, ten-class pooled-probe qualification, and tested
+  head-only and final-block fine-tuning plans.
+- Native LingBot-Vision Small support with strict checkpoint conversion, pinned source and weight identities, and
+  intermediate-feature reference checks.
+- Native EoMT query segmentation with encoder-block query insertion, mask annealing, auxiliary predictions, semantic
+  score reduction, and a full-encoder fine-tuning plan.
+- A reusable plain mask decoder and frozen-encoder PMT compositions for DINOv3 Small and LingBot-Vision Small, with
+  explicit lateral normalization state, encoder-bound feature caches, and full or decoder-only checkpoints.
+
+### Changed
+
+- Checkpoint readers accept caller-selected resource limits and validate array declarations before allocation.
+- Pretrained loading verifies pinned archive identities. Selected probes have offline numerical and ONNX qualification
+  records; EoMT and PMT have pinned numerical references.
+
+### Fixed
+
+- `MBConv` no longer fails when its pre-pointwise activation is `None`; a missing activation is applied as identity.
+
+## [2.2.0] - 2026-09-05
+
+### Added
+
+- Expanded ConvNeXt model factories, including ConvNeXt V2 with Global Response Normalization, RMS-normalized variants,
+  and overlapping stems.
+- Pretrained weights for 66 ConvNeXt checkpoints: 40 V1 and 26 V2 variants, including FCMAE backbones and fine-tuned
+  classifiers. Public factories support `pretrained=True` and named upstream checkpoint variants.
+- Trusted timm reference fixtures for ConvNeXt Atto, ConvNeXt Zepto RMS with an overlapping stem, and ConvNeXt V2 Atto.
+  Feature and classifier-logit parity runs through the same reference suite as DINOv3, with elementwise `atol=1e-4` and
+  `rtol=1e-5`; direct Torch conversion tests also cover V2 blocks with overlapping stems.
+- Bundled upstream license snapshots, a pretrained-model license index, and conversion attribution notices in source and
+  wheel distributions. ConvNeXt V2 weights retain their upstream CC BY-NC 4.0 terms. T0 source provenance is documented
+  separately from its checkpoint license.
+- A reproducible CPU performance benchmark and [performance audit](docs/performance.md).
+
+### Changed
+
+- Pinned the pretrained Hugging Face repository to `6916a4a3d460cfa804419454baf3d153885f3b6a` and registered trusted
+  SHA-256 digests for all new ConvNeXt archives.
+- ConvNeXt conversion now uses pinned upstream revisions, strict parameter mapping, native-resolution feature and logit
+  comparisons for two deterministic inputs, and an exact archive-reload check. The checked-in conversion report records
+  source revisions, archive digests, and measured errors for all 66 checkpoints.
+- Reduced tabular attention work by projecting keys and values only for training rows, and replaced PartialFormer's
+  second permutation sort with an integer scatter.
+- Reduced fine-tuning setup and merge/unmerge overhead through ancestor-based selector matching, batched PEFT wrapper
+  replacement, and triangular solves in RegMean's Cholesky solver.
+- Consolidated shared feature-stage execution, tabular registry registration, adapter forwarding, and LoRA lifecycle
+  helpers while retaining their existing behavior.
+
+### Fixed
+
+- Global Response Normalization now has finite gradients for zero-valued channels while preserving its forward values.
+- Pretrained ConvNeXt models use exact GELU, including the activated overlapping stem, to match upstream checkpoint
+  numerics. Existing randomly initialized model defaults retain their approximate GELU behavior.
+
 ## [2.1.0] - 2026-08-10
 
 ### Added

equimo-2.3.0/LICENSE.md

@@ -0,0 +1,16 @@
+MIT License
+
+Copyright (c) 2024 Clément POIRET
+
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equimo-2.3.0/LICENSES/Apache-2.0.txt

@@ -0,0 +1,203 @@
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equimo-2.3.0/LICENSES/pretrained/README.md

@@ -0,0 +1,93 @@
+# Pretrained-model licenses
+
+Pretrained weights available through Equimo remain subject to their upstream licenses. This directory bundles the
+license text associated with every pretrained model family known to Equimo on the date shown below. These copies are
+provided for notice and redistribution purposes; they do not replace the upstream terms and are not legal advice.
+
+> **Check before use.** Upstream licenses can evolve, so the bundled copies may be outdated. Before using a pretrained
+> model, follow its **Current license** link and check the latest version. If you find an outdated license here, please
+> open an issue or pull request.
+
+The family prefixes and counts cover all identifiers in `equimo._pretrained.PRETRAINED_ARCHIVE_SHA256`. The checked date
+records when the linked upstream terms and bundled snapshot were last reviewed; it does not guarantee that the terms are
+still current.
+
+<!-- pretrained-license-table:begin -->
+
+| Family     | Identifier prefix | Count | License                                                      | Bundled snapshot                                        | Model/source                                                                             | Current license                                                                                                  | Checked    |
+| ---------- | ----------------- | ----: | ------------------------------------------------------------ | ------------------------------------------------------- | ---------------------------------------------------------------------------------------- | ---------------------------------------------------------------------------------------------------------------- | ---------- |
+| ast        | `ast_`            |     2 | BSD 3-Clause                                                 | [snapshot](ast-BSD-3-Clause.txt)                        | [AST model](https://huggingface.co/MIT/ast-finetuned-audioset-10-10-0.4593)              | [upstream license](https://github.com/YuanGongND/ast/blob/master/LICENSE)                                        | 2026-08-21 |
+| convnext   | `convnext_`       |    40 | Apache 2.0                                                   | [snapshot](convnext-Apache-2.0.txt)                     | [ConvNeXt checkpoints](https://huggingface.co/timm/convnext_atto.d2_in1k)                | [upstream license](https://huggingface.co/timm/convnext_atto.d2_in1k)                                            | 2026-09-05 |
+| convnextv2 | `convnextv2_`     |    26 | Creative Commons Attribution NonCommercial 4.0 International | [snapshot](convnextv2-CC-BY-NC-4.0.txt)                 | [ConvNeXt V2](https://github.com/facebookresearch/ConvNeXt-V2)                           | [upstream license](https://github.com/facebookresearch/ConvNeXt-V2/blob/main/LICENSE)                            | 2026-09-05 |
+| dinov2     | `dinov2_`         |     8 | Apache 2.0                                                   | [snapshot](dinov2-Apache-2.0.txt)                       | [DINOv2](https://github.com/facebookresearch/dinov2)                                     | [upstream license](https://github.com/facebookresearch/dinov2/blob/main/LICENSE)                                 | 2026-08-21 |
+| dinov3     | `dinov3_`         |     8 | DINOv3 License                                               | [snapshot](dinov3-License.md)                           | [DINOv3](https://github.com/facebookresearch/dinov3)                                     | [upstream license](https://github.com/facebookresearch/dinov3/blob/main/LICENSE.md)                              | 2026-08-21 |
+| eupe       | `eupe_`           |     6 | FAIR Noncommercial Research License v1                       | [snapshot](eupe-FAIR-Noncommercial-Research-License.md) | [EUPE](https://github.com/facebookresearch/EUPE)                                         | [upstream license](https://github.com/facebookresearch/EUPE/blob/main/LICENSE.md)                                | 2026-08-21 |
+| lingbot    | `lingbot_`        |     4 | Apache 2.0                                                   | [snapshot](lingbot-vision-Apache-2.0.txt)               | [LingBot-Vision checkpoints](https://huggingface.co/collections/robbyant/lingbot-vision) | [upstream license](https://github.com/robbyant/lingbot-vision/blob/main/LICENSE)                                 | 2026-09-23 |
+| siglip2    | `siglip2_`        |    15 | Apache 2.0                                                   | [snapshot](siglip2-Apache-2.0.txt)                      | [SigLIP 2 model](https://huggingface.co/google/siglip2-base-patch16-256)                 | [current license declaration](https://huggingface.co/google/siglip2-base-patch16-256)                            | 2026-08-21 |
+| t0         | `t0_`             |     1 | Apache 2.0                                                   | [snapshot](t0-alpha-Apache-2.0.txt)                     | [T0-alpha model](https://huggingface.co/theforecastingcompany/t0-alpha)                  | [upstream license](https://github.com/theforecastingcompany/tfc-t0/blob/main/LICENSE)                            | 2026-08-21 |
+| tabpfn     | `tabpfn_`         |     8 | TABPFN-3 License v1.0                                        | [snapshot](tabpfn-3-License-v1.0.txt)                   | [TabPFN-3 model](https://huggingface.co/Prior-Labs/tabpfn_3)                             | [upstream license](https://huggingface.co/Prior-Labs/tabpfn_3/blob/main/LICENSE)                                 | 2026-08-21 |
+| tips       | `tips_`           |    12 | Creative Commons Attribution 4.0 International               | [snapshot](tips-CC-BY-4.0.txt)                          | [TIPS](https://github.com/google-deepmind/tips)                                          | [upstream license statement](https://github.com/google-deepmind/tips/blob/main/README.md#license-and-disclaimer) | 2026-08-21 |
+
+<!-- pretrained-license-table:end -->
+
+## LingBot-Vision
+
+Equimo provides `lingbot_vits16`, `lingbot_vitb16`, `lingbot_vitl16`, and `lingbot_vitg16` constructors and a checkpoint
+converter. The upstream [Small](https://huggingface.co/robbyant/lingbot-vision-vit-small),
+[Base](https://huggingface.co/robbyant/lingbot-vision-vit-base),
+[Large](https://huggingface.co/robbyant/lingbot-vision-vit-large), and
+[Giant](https://huggingface.co/robbyant/lingbot-vision-vit-giant) model cards each declare Apache 2.0 for their weights.
+The [bundled snapshot](lingbot-vision-Apache-2.0.txt) is the upstream LingBot-Vision
+[LICENSE](https://github.com/robbyant/lingbot-vision/blob/151e46321bae4399f8568829f190c7bdec216b49/LICENSE) at the
+source revision used by `models/lingbot.py`. The
+[current upstream license](https://github.com/robbyant/lingbot-vision/blob/main/LICENSE) and model cards were checked on
+2026-09-23.
+
+Equimo converts the upstream parameters to its JAX/Equinox layout and archive format. The converted archives remain
+subject to the upstream Apache 2.0 terms. Check the current upstream license and the relevant model card before use or
+redistribution.
+
+For SigLIP 2, the model card declares `apache-2.0`; its bundled legal text was copied from the Apache-2.0-licensed
+[`big_vision` project](https://github.com/google-research/big_vision/blob/main/LICENSE), which publishes the upstream
+implementation. TIPS licenses software under Apache 2.0 but licenses all other materials, including its checkpoint
+materials, under CC BY 4.0; this inventory therefore bundles the CC BY 4.0 legal code for TIPS pretrained weights.
+
+ConvNeXt V1 checkpoint licenses are declared by their upstream timm model cards; the Apache 2.0 snapshot comes from
+timm. The ConvNeXt V2 snapshot contains both its MIT software license and its CC BY-NC 4.0 model-weight license.
+Converted V2 weights remain subject to the latter. Equimo converted all 66 checkpoints to the JAX/Equinox parameter
+layout and archive format.
+
+## Attribution and modification notices
+
+### TabPFN-3
+
+The upstream license requires this notice to accompany a distribution:
+
+> The TABPFN-3 Model is licensed by Prior Labs GmbH under the TABPFN-3 Non-Commercial License.\
+> Copyright © Prior Labs GmbH 2026.\
+> THE SERVICES ARE PROVIDED FREE OF CHARGE: COMPANY SHALL NOT BE LIABLE FOR DAMAGES RESULTING FROM SLIGHT NEGLIGENCE.
+> LIABILITY FOR GROSS NEGLIGENCE AND INTENTIONAL MISCONDUCT REMAINS UNAFFECTED.
+
+Equimo's pretrained TabPFN-3 archives are derivatives: upstream checkpoint parameters were converted to Equimo's
+JAX/Equinox parameter layout and archive format and are used with Equimo's JAX/Equinox implementation. They are not an
+official Prior Labs product and are not represented as endorsed, approved, or validated by Prior Labs.
+
+### TIPS
+
+TIPS checkpoint materials are Copyright 2025 DeepMind Technologies Limited and are made available under the
+[Creative Commons Attribution 4.0 International License](https://creativecommons.org/licenses/by/4.0/). Equimo converted
+the upstream vision and text checkpoint parameters to its JAX/Equinox parameter layout and archive format. The upstream
+source is the [`google-deepmind/tips` project](https://github.com/google-deepmind/tips), which states that it is not an
+official Google product. No endorsement by the upstream authors is implied.
+
+### T0-alpha
+
+Equimo converted the upstream T0-alpha checkpoint to its JAX/Equinox parameter layout and archive format. The Apache-2.0
+snapshot in this directory covers the pretrained checkpoint; the T0-derived source implementation has separate
+attribution in Equimo's source distribution.
+
+### Other converted checkpoints
+
+Equimo-hosted pretrained archives for the other families likewise repackage or convert upstream parameters for Equimo's
+JAX/Equinox implementations. Consult each current license above for all conditions that apply to use, redistribution,
+publication, attribution, and modified materials.

equimo-2.3.0/LICENSES/pretrained/ast-BSD-3-Clause.txt

@@ -0,0 +1,29 @@
+BSD 3-Clause License
+
+Copyright (c) 2021, Yuan Gong
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
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+   and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its
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+
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+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

equimo-2.3.0/LICENSES/pretrained/convnext-Apache-2.0.txt

@@ -0,0 +1,201 @@
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+   1. Definitions.
+
+      "License" shall mean the terms and conditions for use, reproduction,
+      and distribution as defined by Sections 1 through 9 of this document.
+
+      "Licensor" shall mean the copyright owner or entity authorized by
+      the copyright owner that is granting the License.
+
+      "Legal Entity" shall mean the union of the acting entity and all
+      other entities that control, are controlled by, or are under common
+      control with that entity. For the purposes of this definition,
+      "control" means (i) the power, direct or indirect, to cause the
+      direction or management of such entity, whether by contract or
+      otherwise, or (ii) ownership of fifty percent (50%) or more of the
+      outstanding shares, or (iii) beneficial ownership of such entity.
+
+      "You" (or "Your") shall mean an individual or Legal Entity
+      exercising permissions granted by this License.
+
+      "Source" form shall mean the preferred form for making modifications,
+      including but not limited to software source code, documentation
+      source, and configuration files.
+
+      "Object" form shall mean any form resulting from mechanical
+      transformation or translation of a Source form, including but
+      not limited to compiled object code, generated documentation,
+      and conversions to other media types.
+
+      "Work" shall mean the work of authorship, whether in Source or
+      Object form, made available under the License, as indicated by a
+      copyright notice that is included in or attached to the work
+      (an example is provided in the Appendix below).
+
+      "Derivative Works" shall mean any work, whether in Source or Object
+      form, that is based on (or derived from) the Work and for which the
+      editorial revisions, annotations, elaborations, or other modifications
+      represent, as a whole, an original work of authorship. For the purposes
+      of this License, Derivative Works shall not include works that remain
+      separable from, or merely link (or bind by name) to the interfaces of,
+      the Work and Derivative Works thereof.
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