Equimo 2.0.0a2__tar.gz → 2.2.0__tar.gz

equimo-2.2.0/CHANGELOG.md

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+# Changelog
+
+All notable changes to Equimo are documented here. Equimo follows Semantic Versioning from version 2.0.0 onward.
+
+## [2.2.0] - 2026-09-05
+
+### Added
+
+- Expanded ConvNeXt model factories, including ConvNeXt V2 with Global Response Normalization, RMS-normalized
+  variants, and overlapping stems.
+- Pretrained weights for 66 ConvNeXt checkpoints: 40 V1 and 26 V2 variants, including FCMAE backbones and fine-tuned
+  classifiers. Public factories support `pretrained=True` and named upstream checkpoint variants.
+- Trusted timm reference fixtures for ConvNeXt Atto, ConvNeXt Zepto RMS with an overlapping stem, and ConvNeXt V2
+  Atto. Feature and classifier-logit parity runs through the same reference suite as DINOv3, with elementwise
+  `atol=1e-4` and `rtol=1e-5`; direct Torch conversion tests also cover V2 blocks with overlapping stems.
+- Bundled upstream license snapshots, a pretrained-model license index, and conversion attribution notices in
+  source and wheel distributions. ConvNeXt V2 weights retain their upstream CC BY-NC 4.0 terms. T0 source provenance
+  is documented separately from its checkpoint license.
+- A reproducible CPU performance benchmark and [performance audit](docs/performance.md).
+
+### Changed
+
+- Pinned the pretrained Hugging Face repository to `6916a4a3d460cfa804419454baf3d153885f3b6a` and registered trusted
+  SHA-256 digests for all new ConvNeXt archives.
+- ConvNeXt conversion now uses pinned upstream revisions, strict parameter mapping, native-resolution feature and
+  logit comparisons for two deterministic inputs, and an exact archive-reload check. The checked-in conversion
+  report records source revisions, archive digests, and measured errors for all 66 checkpoints.
+- Reduced tabular attention work by projecting keys and values only for training rows, and replaced PartialFormer's
+  second permutation sort with an integer scatter.
+- Reduced fine-tuning setup and merge/unmerge overhead through ancestor-based selector matching, batched PEFT wrapper
+  replacement, and triangular solves in RegMean's Cholesky solver.
+- Consolidated shared feature-stage execution, tabular registry registration, adapter forwarding, and LoRA lifecycle
+  helpers while retaining their existing behavior.
+
+### Fixed
+
+- Global Response Normalization now has finite gradients for zero-valued channels while preserving its forward values.
+- Pretrained ConvNeXt models use exact GELU, including the activated overlapping stem, to match upstream checkpoint
+  numerics. Existing randomly initialized model defaults retain their approximate GELU behavior.
+
+## [2.1.0] - 2026-08-10
+
+### Added
+
+- Layout-aware `RotaryFactors` and canonical rotary generation/application helpers under `equimo.core.layers`.
+- An experimental `equimo.timeseries` namespace with the raw T0/T0-alpha patch-transformer backbone, converted
+  pretrained weights, and a documented tensor, scaling, padding, and output contract.
+- Apache-2.0 licensing and upstream attribution for the T0-derived modules, alongside Equimo's MIT-licensed original
+  code.
+
+### Removed
+
+- **Breaking:** raw `(sin, cos)` rotary plumbing (`get_sincos()` and `rope_sincos=`), the general `qk_transform`
+  attention callback, and rotary helper re-exports from attention modules. Rotary producers now return `RotaryFactors`
+  from `get_factors()`, and attention accepts `rotary=`.
+- **Breaking:** unused fine-tuning API surface identified by a code audit (nothing removed was exercised by
+  documentation, examples, or tests beyond its own definition): the method-profile layer (`profiles.py`,
+  `MethodProfile`, `FineTunePlan.profile`), the `*Recipe` shells duplicating the real `*Config` classes (`LoRARecipe`,
+  `DoRARecipe`, `AdapterRecipe`, `VPTShallowRecipe`, `VPTDeepRecipe`, `LinearProbeRecipe`, `LinearProbeConfig`,
+  `FineTuneRecipe`, `HeadSpec`, `SAMMetadata`), the `equimo.finetune.integrations` package, the
+  `equimo.finetune.tabular` package and other one-line aliases (`partition_for_training`, `locked_tower`,
+  `linear_probe`, `attention_pool_probe`, `adapter_transformer_strong`, `merge_and_save`), the unused
+  `MergeMethod`/`MergePlan`/`KnOTSMerging` and `PEFTModuleMixin` protocols, and `CompactLeafMap`,
+  `TokenClassificationHead`, `TokenIndexPool`, `is_layer_norm`. Method fidelity notes moved to
+  `docs/finetuning/method_defaults.md`.
+- Constructor parameters that were accepted but silently ignored: `C3(n)`, `FasterNetBlock(kernel_size, padding)`,
+  `DoubleConvBlock(norm_max_group)`, `LinearAngularAttention(qk_norm)`, `RFAttentionBlock(residual_mbconv)`,
+  `ConvAttention(norm_kwargs)`, `Vssd(d_state, d_conv)`, and `interpolate_antialias` on `FasterViT`/`PartialFormer`.
+- `equimo.catalog`'s runtime descriptor-validation framework and `create_model` remain; the authoring contract is now
+  enforced by tests.
+
+### Changed
+
+- **Breaking:** `save_delta` and `load_delta` accept a single, documented call order:
+  `save_delta(model, path, *, base_model=None, spec=None, ...)` and `load_delta(base_model, path_or_bundle)`. The
+  on-disk bundle format is unchanged.
+- `replace_head` always validates the replacement head; the `validate_shape` and `preserve_old_head_metadata` flags are
+  removed.
+- Internal consolidation with no behavioral or checkpoint impact: shared registry factories, model-variant factory,
+  drop-path and layer-scale helpers, PEFT micro-helpers and wrapper walkers, entry-based delta codec drivers,
+  feature-forward mixins, and shared ViT/Parcae embedding builders. Saved-checkpoint compatibility is guarded by a new
+  structure-signature test (`tests/test_checkpoint_signature_stability.py`).
+- Core attention accepts leading batch axes and optional Q/K transforms. Nonzero masks identify allowed pairs, and fully
+  masked query rows now contribute zero attention probability mass.
+
+### Fixed
+
+- Corrected ViT-5 and direct vision RoPE feature pairing, T0 XPos low-precision dtypes, rectangular MLLA RoPE grids, and
+  TabPFN custom `rope_base` isolation from Equinox's theta-blind global factor cache.
+- Deterministic built-in model and layer paths no longer stage dead JAX PRNG operations when `inference=True`, enabling
+  direct export through converters that do not lower randomness primitives while preserving training key schedules.
+  VisionParcae's explicitly stochastic state initializers remain key-dependent; `state_init="zero"` provides its
+  PRNG-free export path.
+
+## [2.0.0] - 2026-07-15
+
+### Added
+
+- Public modality namespaces for vision, language, audio, and tabular models, with shared layers under `equimo.core`.
+- The `equimo.finetune` subsystem, including trainability plans, PEFT methods, feature extraction, calibration, merging,
+  and portable delta bundles.
+- Versioned model-checkpoint metadata with model-structure and SHA-256 validation. Newly written model, delta, and
+  calibration archives are staged atomically and read with explicit resource limits.
+- An experimental, read-only model catalog in `equimo.catalog`.
+
+### Changed
+
+- Python support is 3.12 through 3.14. The declared JAX and Equinox minima now match the effective requirements of the
+  runtime dependency graph.
+- Model loading uses a constructed model plus `equimo.serialization.load_weights`. The built-in Hugging Face repository
+  points to an immutable revision, and every uploaded archive is verified against its pinned Git LFS SHA-256 digest.
+- Fine-tuning paths now escape dots, backslashes, and integer-looking string keys, keeping mapping keys distinct from
+  sequence indices.
+- Language pooling and positional/mask operations preserve low-precision model dtypes while accumulating sensitive
+  reductions in float32.
+
+### Fixed
+
+- Corrected the state-space duality scan recurrence, chunk transitions, and output dtype.
+- Corrected the DINO projection head by removing the activation after its final linear layer.
+- Corrected convolutional patch-embedding output shapes for odd image sizes.
+- Made `DropPath` and `DropPathAdd` accept scalar JAX probabilities and handle a probability of one deterministically.
+- Preserved unknown token ID zero instead of treating every zero token as padding.
+- Forwarded `key` and `inference` independently through feature extractors and heads.
+- Preserved unmatched destination parameters during non-strict PyTorch conversion and handled CPU, conjugate/negative,
+  bfloat16, and destination dtype conversion safely.
+- Made AdaLoRA, LoRA-FA, FourierFT, and ordinary trainable leaves round-trip through fine-tuning bundles; merge,
+  unmerge, and strip now cover the complete supported LoRA family.
+- Rejected non-finite calibration statistics.
+
+### Security and reliability
+
+- Archive extraction no longer replaces a caller-owned sibling directory.
+- Model, delta, and calibration readers reject duplicate, unexpected, non-regular, oversized, truncated, or
+  checksum-mismatched members.
+- Archive extraction locks work on both POSIX and Windows.
+
+### Removed
+
+- The v1 top-level `equimo.models`, `equimo.layers`, `equimo.io`, `equimo.implicit`, and `equimo.experimental` layouts.
+- The v1 metadata-driven `load_model` constructor. Equimo v1 archives are not part of the v2 compatibility contract.
+
+Existing model archives uploaded for the v2 alpha releases remain loadable and do not need to be regenerated. See the
+[v2 migration guide](docs/migration-v2.md) and [stability policy](docs/stability.md).

equimo-2.2.0/LICENSE.md

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+MIT License
+
+Copyright (c) 2024 Clément POIRET
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
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+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

equimo-2.2.0/LICENSES/Apache-2.0.txt

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equimo-2.2.0/LICENSES/pretrained/README.md

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+# Pretrained-model licenses
+
+Pretrained weights available through Equimo remain subject to their upstream
+licenses. This directory bundles the license text associated with every
+pretrained model family known to Equimo on the date shown below. These copies
+are provided for notice and redistribution purposes; they do not replace the
+upstream terms and are not legal advice.
+
+> **Check before use.** Upstream licenses can evolve, so the bundled copies may be outdated.
+> Before using a pretrained model, follow its **Current license**
+> link and check the latest version. If you find an outdated license here,
+> please open an issue or pull request.
+
+The family prefixes and counts cover all identifiers in
+`equimo._pretrained.PRETRAINED_ARCHIVE_SHA256`. The checked date records when
+the linked upstream terms and bundled snapshot were last reviewed; it does not
+guarantee that the terms are still current.
+
+<!-- pretrained-license-table:begin -->
+| Family | Identifier prefix | Count | License | Bundled snapshot | Model/source | Current license | Checked |
+| --- | --- | ---: | --- | --- | --- | --- | --- |
+| ast | `ast_` | 2 | BSD 3-Clause | [snapshot](ast-BSD-3-Clause.txt) | [AST model](https://huggingface.co/MIT/ast-finetuned-audioset-10-10-0.4593) | [upstream license](https://github.com/YuanGongND/ast/blob/master/LICENSE) | 2026-08-21 |
+| convnext | `convnext_` | 40 | Apache 2.0 | [snapshot](convnext-Apache-2.0.txt) | [ConvNeXt checkpoints](https://huggingface.co/timm/convnext_atto.d2_in1k) | [upstream license](https://huggingface.co/timm/convnext_atto.d2_in1k) | 2026-09-05 |
+| convnextv2 | `convnextv2_` | 26 | Creative Commons Attribution NonCommercial 4.0 International | [snapshot](convnextv2-CC-BY-NC-4.0.txt) | [ConvNeXt V2](https://github.com/facebookresearch/ConvNeXt-V2) | [upstream license](https://github.com/facebookresearch/ConvNeXt-V2/blob/main/LICENSE) | 2026-09-05 |
+| dinov2 | `dinov2_` | 8 | Apache 2.0 | [snapshot](dinov2-Apache-2.0.txt) | [DINOv2](https://github.com/facebookresearch/dinov2) | [upstream license](https://github.com/facebookresearch/dinov2/blob/main/LICENSE) | 2026-08-21 |
+| dinov3 | `dinov3_` | 8 | DINOv3 License | [snapshot](dinov3-License.md) | [DINOv3](https://github.com/facebookresearch/dinov3) | [upstream license](https://github.com/facebookresearch/dinov3/blob/main/LICENSE.md) | 2026-08-21 |
+| eupe | `eupe_` | 6 | FAIR Noncommercial Research License v1 | [snapshot](eupe-FAIR-Noncommercial-Research-License.md) | [EUPE](https://github.com/facebookresearch/EUPE) | [upstream license](https://github.com/facebookresearch/EUPE/blob/main/LICENSE.md) | 2026-08-21 |
+| siglip2 | `siglip2_` | 15 | Apache 2.0 | [snapshot](siglip2-Apache-2.0.txt) | [SigLIP 2 model](https://huggingface.co/google/siglip2-base-patch16-256) | [current license declaration](https://huggingface.co/google/siglip2-base-patch16-256) | 2026-08-21 |
+| t0 | `t0_` | 1 | Apache 2.0 | [snapshot](t0-alpha-Apache-2.0.txt) | [T0-alpha model](https://huggingface.co/theforecastingcompany/t0-alpha) | [upstream license](https://github.com/theforecastingcompany/tfc-t0/blob/main/LICENSE) | 2026-08-21 |
+| tabpfn | `tabpfn_` | 8 | TABPFN-3 License v1.0 | [snapshot](tabpfn-3-License-v1.0.txt) | [TabPFN-3 model](https://huggingface.co/Prior-Labs/tabpfn_3) | [upstream license](https://huggingface.co/Prior-Labs/tabpfn_3/blob/main/LICENSE) | 2026-08-21 |
+| tips | `tips_` | 12 | Creative Commons Attribution 4.0 International | [snapshot](tips-CC-BY-4.0.txt) | [TIPS](https://github.com/google-deepmind/tips) | [upstream license statement](https://github.com/google-deepmind/tips/blob/main/README.md#license-and-disclaimer) | 2026-08-21 |
+<!-- pretrained-license-table:end -->
+
+For SigLIP 2, the model card declares `apache-2.0`; its bundled legal text was
+copied from the Apache-2.0-licensed
+[`big_vision` project](https://github.com/google-research/big_vision/blob/main/LICENSE),
+which publishes the upstream implementation. TIPS licenses software under
+Apache 2.0 but licenses all other materials, including its checkpoint
+materials, under CC BY 4.0; this inventory therefore bundles the CC BY 4.0
+legal code for TIPS pretrained weights.
+
+ConvNeXt V1 checkpoint licenses are declared by their upstream timm model
+cards; the Apache 2.0 snapshot comes from timm. The ConvNeXt V2 snapshot
+contains both its MIT software license and its CC BY-NC 4.0 model-weight
+license. Converted V2 weights remain subject to the latter. Equimo converted
+all 66 checkpoints to the JAX/Equinox parameter layout and archive format.
+
+## Attribution and modification notices
+
+### TabPFN-3
+
+The upstream license requires this notice to accompany a distribution:
+
+> The TABPFN-3 Model is licensed by Prior Labs GmbH under the TABPFN-3
+> Non-Commercial License.  
+> Copyright © Prior Labs GmbH 2026.  
+> THE SERVICES ARE PROVIDED FREE OF CHARGE: COMPANY SHALL NOT BE LIABLE FOR
+> DAMAGES RESULTING FROM SLIGHT NEGLIGENCE. LIABILITY FOR GROSS NEGLIGENCE AND
+> INTENTIONAL MISCONDUCT REMAINS UNAFFECTED.
+
+Equimo's pretrained TabPFN-3 archives are derivatives: upstream checkpoint
+parameters were converted to Equimo's JAX/Equinox parameter layout and archive
+format and are used with Equimo's JAX/Equinox implementation. They are not an
+official Prior Labs product and are not represented as endorsed, approved, or
+validated by Prior Labs.
+
+### TIPS
+
+TIPS checkpoint materials are Copyright 2025 DeepMind Technologies Limited and
+are made available under the
+[Creative Commons Attribution 4.0 International License](https://creativecommons.org/licenses/by/4.0/).
+Equimo converted the upstream vision and text checkpoint parameters to its
+JAX/Equinox parameter layout and archive format. The upstream source is the
+[`google-deepmind/tips` project](https://github.com/google-deepmind/tips), which
+states that it is not an official Google product. No endorsement by the
+upstream authors is implied.
+
+### T0-alpha
+
+Equimo converted the upstream T0-alpha checkpoint to its JAX/Equinox parameter
+layout and archive format. The Apache-2.0 snapshot in this directory covers the
+pretrained checkpoint; the T0-derived source implementation has separate
+attribution in Equimo's source distribution.
+
+### Other converted checkpoints
+
+Equimo-hosted pretrained archives for the other families likewise repackage or
+convert upstream parameters for Equimo's JAX/Equinox implementations. Consult
+each current license above for all conditions that apply to use,
+redistribution, publication, attribution, and modified materials.

equimo-2.2.0/LICENSES/pretrained/ast-BSD-3-Clause.txt

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+BSD 3-Clause License
+
+Copyright (c) 2021, Yuan Gong
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.