EllipSect 3.4.5__tar.gz → 3.4.9__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- ellipsect-3.4.9/.github/workflows/publish-pypi.yml +50 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/PKG-INFO +35 -44
- {ellipsect-3.4.5 → ellipsect-3.4.9}/README.rst +33 -43
- {ellipsect-3.4.5 → ellipsect-3.4.9}/setup.cfg +1 -2
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/EllipSect.egg-info/PKG-INFO +35 -44
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/EllipSect.egg-info/SOURCES.txt +3 -0
- ellipsect-3.4.9/src/EllipSect.egg-info/scm_file_list.json +71 -0
- ellipsect-3.4.9/src/EllipSect.egg-info/scm_version.json +8 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/inout/plots.py +5 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/inout/read.py +16 -5
- {ellipsect-3.4.5 → ellipsect-3.4.9}/AUTHORS.rst +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/CHANGELOG.rst +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/CITATION.cff +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/CONTRIBUTING.rst +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/LICENSE.txt +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/docs/Makefile +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/docs/_static/.gitignore +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/docs/api.rst +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/docs/authors.rst +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/docs/changelog.rst +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/docs/conf.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/docs/contributing.rst +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/docs/howto.rst +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/docs/index.rst +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/docs/license.rst +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/docs/readme.rst +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/docs/requirements.txt +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/example/README +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/example/gal.fits +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/example/galfit.feedme +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/example/psf.fits +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/img/A2029.ring.png +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/img/A85.con-cub.png +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/img/A85.cub.png +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/img/A85.def.png +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/img/A85.ell-cub.png +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/img/A85.grid.png +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/img/A85.log.png +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/img/A85.pix.png +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/img/A85.png +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/img/A85.ranx1.png +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/img/A85.ranx2.png +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/img/A85.rany1.png +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/pyproject.toml +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/setup.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/EllipSect.egg-info/dependency_links.txt +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/EllipSect.egg-info/entry_points.txt +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/EllipSect.egg-info/not-zip-safe +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/EllipSect.egg-info/requires.txt +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/EllipSect.egg-info/top_level.txt +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/__init__.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/ellipsectors.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/inout/__init__.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/inout/galfit.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/inout/gfits.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/inout/prt.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/lib/__init__.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/lib/clas.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/lib/libs.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/phot/__init__.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/phot/ned.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/phot/phot.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/phot/tidal.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/sectors/__init__.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/sectors/comp.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/sectors/ellip.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/sectors/num.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/sectors/sect.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/sky/__init__.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/src/ellipsect/sky/sky.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/tests/conftest.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/tests/gal.fits +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/tests/galfit.01 +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/tests/imgblock.fits +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/tests/psf.fits +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/tests/test_ellipsect.py +0 -0
- {ellipsect-3.4.5 → ellipsect-3.4.9}/tox.ini +0 -0
|
@@ -0,0 +1,50 @@
|
|
|
1
|
+
name: Publish to PyPI
|
|
2
|
+
|
|
3
|
+
on:
|
|
4
|
+
release:
|
|
5
|
+
types: [published]
|
|
6
|
+
workflow_dispatch:
|
|
7
|
+
|
|
8
|
+
jobs:
|
|
9
|
+
build:
|
|
10
|
+
name: Build distributions
|
|
11
|
+
runs-on: ubuntu-latest
|
|
12
|
+
|
|
13
|
+
steps:
|
|
14
|
+
- name: Check out source
|
|
15
|
+
uses: actions/checkout@v5
|
|
16
|
+
|
|
17
|
+
- name: Set up Python
|
|
18
|
+
uses: actions/setup-python@v5
|
|
19
|
+
with:
|
|
20
|
+
python-version: "3.12"
|
|
21
|
+
|
|
22
|
+
- name: Install build tool
|
|
23
|
+
run: python -m pip install --upgrade build
|
|
24
|
+
|
|
25
|
+
- name: Build sdist and wheel
|
|
26
|
+
run: python -m build
|
|
27
|
+
|
|
28
|
+
- name: Upload distributions as artifact
|
|
29
|
+
uses: actions/upload-artifact@v4
|
|
30
|
+
with:
|
|
31
|
+
name: python-package-distributions
|
|
32
|
+
path: dist/
|
|
33
|
+
|
|
34
|
+
publish:
|
|
35
|
+
name: Upload to PyPI
|
|
36
|
+
needs: build
|
|
37
|
+
runs-on: ubuntu-latest
|
|
38
|
+
environment: pypi
|
|
39
|
+
permissions:
|
|
40
|
+
id-token: write
|
|
41
|
+
|
|
42
|
+
steps:
|
|
43
|
+
- name: Download distributions
|
|
44
|
+
uses: actions/download-artifact@v4
|
|
45
|
+
with:
|
|
46
|
+
name: python-package-distributions
|
|
47
|
+
path: dist/
|
|
48
|
+
|
|
49
|
+
- name: Publish distributions to PyPI
|
|
50
|
+
uses: pypa/gh-action-pypi-publish@release/v1
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.4
|
|
2
2
|
Name: EllipSect
|
|
3
|
-
Version: 3.4.
|
|
3
|
+
Version: 3.4.9
|
|
4
4
|
Summary: A surface brightness analysis tool for GALFIT output.
|
|
5
5
|
Home-page: https://github.com/canorve/EllipSect
|
|
6
6
|
Author: Christopher Añorve
|
|
@@ -18,6 +18,7 @@ Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
|
|
|
18
18
|
Classifier: Natural Language :: Spanish
|
|
19
19
|
Classifier: Natural Language :: English
|
|
20
20
|
Classifier: Topic :: Scientific/Engineering :: Astronomy
|
|
21
|
+
Requires-Python: >=3.8
|
|
21
22
|
Description-Content-Type: text/x-rst; charset=UTF-8
|
|
22
23
|
License-File: LICENSE.txt
|
|
23
24
|
Requires-Dist: importlib-metadata; python_version < "3.8"
|
|
@@ -36,10 +37,11 @@ Dynamic: license-file
|
|
|
36
37
|
|
|
37
38
|
.. contents::
|
|
38
39
|
:depth: 3
|
|
39
|
-
..
|
|
40
40
|
|
|
41
41
|
|
|
42
|
-
|
|
42
|
+
EllipSect
|
|
43
|
+
=========
|
|
44
|
+
|
|
43
45
|
|
|
44
46
|
.. image:: https://img.shields.io/pypi/v/EllipSect.svg
|
|
45
47
|
:alt: PyPI-Server
|
|
@@ -53,15 +55,11 @@ Dynamic: license-file
|
|
|
53
55
|
:target: https://zenodo.org/badge/latestdoi/282223217
|
|
54
56
|
|
|
55
57
|
|
|
56
|
-
**EllipSect**
|
|
57
|
-
=============
|
|
58
|
-
|
|
59
|
-
|
|
60
58
|
|
|
61
59
|
EllipSect creates surface brightness profiles and extracts other
|
|
62
|
-
photometric data from the GALFIT output
|
|
60
|
+
photometric data from the GALFIT output Peng et al. (2002).
|
|
63
61
|
|
|
64
|
-
This code is “similar”
|
|
62
|
+
This code is “similar” to IRAF’s ellipse routine, but is is not a substitute for it. It
|
|
65
63
|
creates a Surface brightness profile for the galaxy, model and
|
|
66
64
|
, optionally, individual model components.
|
|
67
65
|
|
|
@@ -73,12 +71,11 @@ brightness at effective radius, percentage of total light per component,
|
|
|
73
71
|
radius at 90% of light (for Sersic components only), effective radius in
|
|
74
72
|
kpc, etc.
|
|
75
73
|
|
|
76
|
-
--------------
|
|
77
74
|
|
|
78
|
-
|
|
79
|
-
|
|
75
|
+
Installation
|
|
76
|
+
--------------
|
|
80
77
|
|
|
81
|
-
The code is written for
|
|
78
|
+
The code is written for Python 3.
|
|
82
79
|
|
|
83
80
|
The python libraries required are:
|
|
84
81
|
|
|
@@ -90,7 +87,7 @@ The python libraries required are:
|
|
|
90
87
|
|
|
91
88
|
Install GALFIT if you haven't done so.
|
|
92
89
|
|
|
93
|
-
Download the latest release, and
|
|
90
|
+
Download the latest release, and install it via
|
|
94
91
|
|
|
95
92
|
::
|
|
96
93
|
|
|
@@ -121,11 +118,10 @@ Run the automated tests:
|
|
|
121
118
|
|
|
122
119
|
|
|
123
120
|
**Note**: *EllipSect* needs the GALFIT output files (GALFIT.XX) to work.
|
|
124
|
-
Although *GALFIT* is not
|
|
121
|
+
Although *GALFIT* is not strictly required, it will require it to create
|
|
125
122
|
the model components and sigma image. Make sure you can call GALFIT from
|
|
126
123
|
the command line. Otherwise the automated tests will fail.
|
|
127
124
|
|
|
128
|
-
--------------
|
|
129
125
|
|
|
130
126
|
For Linux or Mac, just run ellipsect in the command line:
|
|
131
127
|
|
|
@@ -135,13 +131,11 @@ For Linux or Mac, just run ellipsect in the command line:
|
|
|
135
131
|
|
|
136
132
|
and that’s it!!
|
|
137
133
|
|
|
138
|
-
--------------
|
|
139
134
|
|
|
140
|
-
|
|
141
|
-
|
|
135
|
+
HOW TO USE
|
|
136
|
+
------------
|
|
142
137
|
|
|
143
138
|
**easy run:**
|
|
144
|
-
^^^^^^^^^^^^^
|
|
145
139
|
|
|
146
140
|
Once installed, run *ellipsect* in the same directory that you run
|
|
147
141
|
GALFIT. It only requires the latest GALFIT’s output file. *The easiest
|
|
@@ -161,15 +155,14 @@ for more options:
|
|
|
161
155
|
|
|
162
156
|
ellipsect --help
|
|
163
157
|
|
|
164
|
-
**Full manual
|
|
165
|
-
^^^^^^^^^^^^^^^^
|
|
158
|
+
**Full manual**:
|
|
166
159
|
|
|
167
160
|
To see other options for EllipSect:
|
|
168
161
|
|
|
169
|
-
`How to use <docs/howto.rst>`__
|
|
162
|
+
`How to use <https://github.com/canorve/EllipSect/blob/master/docs/howto.rst>`__
|
|
163
|
+
|
|
170
164
|
|
|
171
|
-
**Script run
|
|
172
|
-
^^^^^^^^^^^^^^^
|
|
165
|
+
**Script run**:
|
|
173
166
|
|
|
174
167
|
If you want to use EllipSect inside your own python script, you can call
|
|
175
168
|
it in the following way:
|
|
@@ -193,12 +186,11 @@ it in the following way:
|
|
|
193
186
|
To check all the output variables besides AICrit and BulgeToTotal,
|
|
194
187
|
check:
|
|
195
188
|
|
|
196
|
-
`Output variables <docs/api.rst>`__
|
|
189
|
+
`Output variables <https://github.com/canorve/EllipSect/blob/master/docs/api.rst>`__
|
|
197
190
|
|
|
198
|
-
--------------
|
|
199
191
|
|
|
200
|
-
|
|
201
|
-
|
|
192
|
+
Questions?
|
|
193
|
+
-----------
|
|
202
194
|
|
|
203
195
|
Do you have any questions or suggestions? Please send an email to
|
|
204
196
|
canorve [at] gmail [dot] com or open an
|
|
@@ -207,18 +199,16 @@ canorve [at] gmail [dot] com or open an
|
|
|
207
199
|
I’m open to new ideas that can benefit the software *EllipSect* and the
|
|
208
200
|
*GALFIT* community
|
|
209
201
|
|
|
210
|
-
--------------
|
|
211
202
|
|
|
212
|
-
|
|
213
|
-
|
|
203
|
+
License
|
|
204
|
+
---------
|
|
214
205
|
|
|
215
206
|
The code is under the license of **GNU**
|
|
216
207
|
|
|
217
208
|
|
|
218
|
-
-----------
|
|
219
209
|
|
|
220
|
-
|
|
221
|
-
|
|
210
|
+
Cite as
|
|
211
|
+
--------
|
|
222
212
|
|
|
223
213
|
If you find this code useful, please cite as:
|
|
224
214
|
|
|
@@ -226,10 +216,9 @@ Añorve, C., Reyes-Amador, U., de Ramon Toledo, D., Ríos-López, E., & López-C
|
|
|
226
216
|
|
|
227
217
|
Zenodo repository: https://doi.org/10.5281/zenodo.14597845
|
|
228
218
|
|
|
229
|
-
--------------
|
|
230
219
|
|
|
231
|
-
|
|
232
|
-
|
|
220
|
+
References
|
|
221
|
+
-----------
|
|
233
222
|
|
|
234
223
|
Akaike, H. (1974). A New Look at the Statistical Model Identification.
|
|
235
224
|
IEEE Transactions on Automatic Control, 19, 716–723.
|
|
@@ -276,15 +265,17 @@ doi:10.1088/0004-6256/138/5/1417
|
|
|
276
265
|
|
|
277
266
|
Vikram, V., Wadadekar, Y., Kembhavi, A. K., & Vijayagovindan, G. V.
|
|
278
267
|
(2010). PYMORPH: automated galaxy structural parameter estimation using
|
|
279
|
-
PYTHON, 409(4), 1379–1392. doi:10.1111/j.1365-2966.2010.17426.x
|
|
268
|
+
PYTHON, 409(4), 1379–1392. doi:10.1111/j.1365-2966.2010.17426.x
|
|
280
269
|
|
|
281
|
-
|
|
282
|
-
|
|
270
|
+
|
|
271
|
+
Other Stuff
|
|
272
|
+
-----------
|
|
283
273
|
|
|
284
274
|
Check my other project GALFITtools
|
|
285
275
|
`here <https://github.com/canorve/GALFITools>`__
|
|
286
276
|
|
|
287
|
-
|
|
277
|
+
.. |A85a| image:: https://raw.githubusercontent.com/canorve/EllipSect/master/img/A85.cub.png
|
|
278
|
+
.. |A85b| image:: https://raw.githubusercontent.com/canorve/EllipSect/master/img/A85.def.png
|
|
279
|
+
|
|
280
|
+
|
|
288
281
|
|
|
289
|
-
.. |A85a| image:: img/A85.cub.png
|
|
290
|
-
.. |A85b| image:: img/A85.def.png
|
|
@@ -1,9 +1,10 @@
|
|
|
1
1
|
.. contents::
|
|
2
2
|
:depth: 3
|
|
3
|
-
..
|
|
4
3
|
|
|
5
4
|
|
|
6
|
-
|
|
5
|
+
EllipSect
|
|
6
|
+
=========
|
|
7
|
+
|
|
7
8
|
|
|
8
9
|
.. image:: https://img.shields.io/pypi/v/EllipSect.svg
|
|
9
10
|
:alt: PyPI-Server
|
|
@@ -17,15 +18,11 @@
|
|
|
17
18
|
:target: https://zenodo.org/badge/latestdoi/282223217
|
|
18
19
|
|
|
19
20
|
|
|
20
|
-
**EllipSect**
|
|
21
|
-
=============
|
|
22
|
-
|
|
23
|
-
|
|
24
21
|
|
|
25
22
|
EllipSect creates surface brightness profiles and extracts other
|
|
26
|
-
photometric data from the GALFIT output
|
|
23
|
+
photometric data from the GALFIT output Peng et al. (2002).
|
|
27
24
|
|
|
28
|
-
This code is “similar”
|
|
25
|
+
This code is “similar” to IRAF’s ellipse routine, but is is not a substitute for it. It
|
|
29
26
|
creates a Surface brightness profile for the galaxy, model and
|
|
30
27
|
, optionally, individual model components.
|
|
31
28
|
|
|
@@ -37,12 +34,11 @@ brightness at effective radius, percentage of total light per component,
|
|
|
37
34
|
radius at 90% of light (for Sersic components only), effective radius in
|
|
38
35
|
kpc, etc.
|
|
39
36
|
|
|
40
|
-
--------------
|
|
41
37
|
|
|
42
|
-
|
|
43
|
-
|
|
38
|
+
Installation
|
|
39
|
+
--------------
|
|
44
40
|
|
|
45
|
-
The code is written for
|
|
41
|
+
The code is written for Python 3.
|
|
46
42
|
|
|
47
43
|
The python libraries required are:
|
|
48
44
|
|
|
@@ -54,7 +50,7 @@ The python libraries required are:
|
|
|
54
50
|
|
|
55
51
|
Install GALFIT if you haven't done so.
|
|
56
52
|
|
|
57
|
-
Download the latest release, and
|
|
53
|
+
Download the latest release, and install it via
|
|
58
54
|
|
|
59
55
|
::
|
|
60
56
|
|
|
@@ -85,11 +81,10 @@ Run the automated tests:
|
|
|
85
81
|
|
|
86
82
|
|
|
87
83
|
**Note**: *EllipSect* needs the GALFIT output files (GALFIT.XX) to work.
|
|
88
|
-
Although *GALFIT* is not
|
|
84
|
+
Although *GALFIT* is not strictly required, it will require it to create
|
|
89
85
|
the model components and sigma image. Make sure you can call GALFIT from
|
|
90
86
|
the command line. Otherwise the automated tests will fail.
|
|
91
87
|
|
|
92
|
-
--------------
|
|
93
88
|
|
|
94
89
|
For Linux or Mac, just run ellipsect in the command line:
|
|
95
90
|
|
|
@@ -99,13 +94,11 @@ For Linux or Mac, just run ellipsect in the command line:
|
|
|
99
94
|
|
|
100
95
|
and that’s it!!
|
|
101
96
|
|
|
102
|
-
--------------
|
|
103
97
|
|
|
104
|
-
|
|
105
|
-
|
|
98
|
+
HOW TO USE
|
|
99
|
+
------------
|
|
106
100
|
|
|
107
101
|
**easy run:**
|
|
108
|
-
^^^^^^^^^^^^^
|
|
109
102
|
|
|
110
103
|
Once installed, run *ellipsect* in the same directory that you run
|
|
111
104
|
GALFIT. It only requires the latest GALFIT’s output file. *The easiest
|
|
@@ -125,15 +118,14 @@ for more options:
|
|
|
125
118
|
|
|
126
119
|
ellipsect --help
|
|
127
120
|
|
|
128
|
-
**Full manual
|
|
129
|
-
^^^^^^^^^^^^^^^^
|
|
121
|
+
**Full manual**:
|
|
130
122
|
|
|
131
123
|
To see other options for EllipSect:
|
|
132
124
|
|
|
133
|
-
`How to use <docs/howto.rst>`__
|
|
125
|
+
`How to use <https://github.com/canorve/EllipSect/blob/master/docs/howto.rst>`__
|
|
126
|
+
|
|
134
127
|
|
|
135
|
-
**Script run
|
|
136
|
-
^^^^^^^^^^^^^^^
|
|
128
|
+
**Script run**:
|
|
137
129
|
|
|
138
130
|
If you want to use EllipSect inside your own python script, you can call
|
|
139
131
|
it in the following way:
|
|
@@ -157,12 +149,11 @@ it in the following way:
|
|
|
157
149
|
To check all the output variables besides AICrit and BulgeToTotal,
|
|
158
150
|
check:
|
|
159
151
|
|
|
160
|
-
`Output variables <docs/api.rst>`__
|
|
152
|
+
`Output variables <https://github.com/canorve/EllipSect/blob/master/docs/api.rst>`__
|
|
161
153
|
|
|
162
|
-
--------------
|
|
163
154
|
|
|
164
|
-
|
|
165
|
-
|
|
155
|
+
Questions?
|
|
156
|
+
-----------
|
|
166
157
|
|
|
167
158
|
Do you have any questions or suggestions? Please send an email to
|
|
168
159
|
canorve [at] gmail [dot] com or open an
|
|
@@ -171,18 +162,16 @@ canorve [at] gmail [dot] com or open an
|
|
|
171
162
|
I’m open to new ideas that can benefit the software *EllipSect* and the
|
|
172
163
|
*GALFIT* community
|
|
173
164
|
|
|
174
|
-
--------------
|
|
175
165
|
|
|
176
|
-
|
|
177
|
-
|
|
166
|
+
License
|
|
167
|
+
---------
|
|
178
168
|
|
|
179
169
|
The code is under the license of **GNU**
|
|
180
170
|
|
|
181
171
|
|
|
182
|
-
-----------
|
|
183
172
|
|
|
184
|
-
|
|
185
|
-
|
|
173
|
+
Cite as
|
|
174
|
+
--------
|
|
186
175
|
|
|
187
176
|
If you find this code useful, please cite as:
|
|
188
177
|
|
|
@@ -190,10 +179,9 @@ Añorve, C., Reyes-Amador, U., de Ramon Toledo, D., Ríos-López, E., & López-C
|
|
|
190
179
|
|
|
191
180
|
Zenodo repository: https://doi.org/10.5281/zenodo.14597845
|
|
192
181
|
|
|
193
|
-
--------------
|
|
194
182
|
|
|
195
|
-
|
|
196
|
-
|
|
183
|
+
References
|
|
184
|
+
-----------
|
|
197
185
|
|
|
198
186
|
Akaike, H. (1974). A New Look at the Statistical Model Identification.
|
|
199
187
|
IEEE Transactions on Automatic Control, 19, 716–723.
|
|
@@ -240,15 +228,17 @@ doi:10.1088/0004-6256/138/5/1417
|
|
|
240
228
|
|
|
241
229
|
Vikram, V., Wadadekar, Y., Kembhavi, A. K., & Vijayagovindan, G. V.
|
|
242
230
|
(2010). PYMORPH: automated galaxy structural parameter estimation using
|
|
243
|
-
PYTHON, 409(4), 1379–1392. doi:10.1111/j.1365-2966.2010.17426.x
|
|
231
|
+
PYTHON, 409(4), 1379–1392. doi:10.1111/j.1365-2966.2010.17426.x
|
|
244
232
|
|
|
245
|
-
|
|
246
|
-
|
|
233
|
+
|
|
234
|
+
Other Stuff
|
|
235
|
+
-----------
|
|
247
236
|
|
|
248
237
|
Check my other project GALFITtools
|
|
249
238
|
`here <https://github.com/canorve/GALFITools>`__
|
|
250
239
|
|
|
251
|
-
|
|
240
|
+
.. |A85a| image:: https://raw.githubusercontent.com/canorve/EllipSect/master/img/A85.cub.png
|
|
241
|
+
.. |A85b| image:: https://raw.githubusercontent.com/canorve/EllipSect/master/img/A85.def.png
|
|
242
|
+
|
|
243
|
+
|
|
252
244
|
|
|
253
|
-
.. |A85a| image:: img/A85.cub.png
|
|
254
|
-
.. |A85b| image:: img/A85.def.png
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.4
|
|
2
2
|
Name: EllipSect
|
|
3
|
-
Version: 3.4.
|
|
3
|
+
Version: 3.4.9
|
|
4
4
|
Summary: A surface brightness analysis tool for GALFIT output.
|
|
5
5
|
Home-page: https://github.com/canorve/EllipSect
|
|
6
6
|
Author: Christopher Añorve
|
|
@@ -18,6 +18,7 @@ Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
|
|
|
18
18
|
Classifier: Natural Language :: Spanish
|
|
19
19
|
Classifier: Natural Language :: English
|
|
20
20
|
Classifier: Topic :: Scientific/Engineering :: Astronomy
|
|
21
|
+
Requires-Python: >=3.8
|
|
21
22
|
Description-Content-Type: text/x-rst; charset=UTF-8
|
|
22
23
|
License-File: LICENSE.txt
|
|
23
24
|
Requires-Dist: importlib-metadata; python_version < "3.8"
|
|
@@ -36,10 +37,11 @@ Dynamic: license-file
|
|
|
36
37
|
|
|
37
38
|
.. contents::
|
|
38
39
|
:depth: 3
|
|
39
|
-
..
|
|
40
40
|
|
|
41
41
|
|
|
42
|
-
|
|
42
|
+
EllipSect
|
|
43
|
+
=========
|
|
44
|
+
|
|
43
45
|
|
|
44
46
|
.. image:: https://img.shields.io/pypi/v/EllipSect.svg
|
|
45
47
|
:alt: PyPI-Server
|
|
@@ -53,15 +55,11 @@ Dynamic: license-file
|
|
|
53
55
|
:target: https://zenodo.org/badge/latestdoi/282223217
|
|
54
56
|
|
|
55
57
|
|
|
56
|
-
**EllipSect**
|
|
57
|
-
=============
|
|
58
|
-
|
|
59
|
-
|
|
60
58
|
|
|
61
59
|
EllipSect creates surface brightness profiles and extracts other
|
|
62
|
-
photometric data from the GALFIT output
|
|
60
|
+
photometric data from the GALFIT output Peng et al. (2002).
|
|
63
61
|
|
|
64
|
-
This code is “similar”
|
|
62
|
+
This code is “similar” to IRAF’s ellipse routine, but is is not a substitute for it. It
|
|
65
63
|
creates a Surface brightness profile for the galaxy, model and
|
|
66
64
|
, optionally, individual model components.
|
|
67
65
|
|
|
@@ -73,12 +71,11 @@ brightness at effective radius, percentage of total light per component,
|
|
|
73
71
|
radius at 90% of light (for Sersic components only), effective radius in
|
|
74
72
|
kpc, etc.
|
|
75
73
|
|
|
76
|
-
--------------
|
|
77
74
|
|
|
78
|
-
|
|
79
|
-
|
|
75
|
+
Installation
|
|
76
|
+
--------------
|
|
80
77
|
|
|
81
|
-
The code is written for
|
|
78
|
+
The code is written for Python 3.
|
|
82
79
|
|
|
83
80
|
The python libraries required are:
|
|
84
81
|
|
|
@@ -90,7 +87,7 @@ The python libraries required are:
|
|
|
90
87
|
|
|
91
88
|
Install GALFIT if you haven't done so.
|
|
92
89
|
|
|
93
|
-
Download the latest release, and
|
|
90
|
+
Download the latest release, and install it via
|
|
94
91
|
|
|
95
92
|
::
|
|
96
93
|
|
|
@@ -121,11 +118,10 @@ Run the automated tests:
|
|
|
121
118
|
|
|
122
119
|
|
|
123
120
|
**Note**: *EllipSect* needs the GALFIT output files (GALFIT.XX) to work.
|
|
124
|
-
Although *GALFIT* is not
|
|
121
|
+
Although *GALFIT* is not strictly required, it will require it to create
|
|
125
122
|
the model components and sigma image. Make sure you can call GALFIT from
|
|
126
123
|
the command line. Otherwise the automated tests will fail.
|
|
127
124
|
|
|
128
|
-
--------------
|
|
129
125
|
|
|
130
126
|
For Linux or Mac, just run ellipsect in the command line:
|
|
131
127
|
|
|
@@ -135,13 +131,11 @@ For Linux or Mac, just run ellipsect in the command line:
|
|
|
135
131
|
|
|
136
132
|
and that’s it!!
|
|
137
133
|
|
|
138
|
-
--------------
|
|
139
134
|
|
|
140
|
-
|
|
141
|
-
|
|
135
|
+
HOW TO USE
|
|
136
|
+
------------
|
|
142
137
|
|
|
143
138
|
**easy run:**
|
|
144
|
-
^^^^^^^^^^^^^
|
|
145
139
|
|
|
146
140
|
Once installed, run *ellipsect* in the same directory that you run
|
|
147
141
|
GALFIT. It only requires the latest GALFIT’s output file. *The easiest
|
|
@@ -161,15 +155,14 @@ for more options:
|
|
|
161
155
|
|
|
162
156
|
ellipsect --help
|
|
163
157
|
|
|
164
|
-
**Full manual
|
|
165
|
-
^^^^^^^^^^^^^^^^
|
|
158
|
+
**Full manual**:
|
|
166
159
|
|
|
167
160
|
To see other options for EllipSect:
|
|
168
161
|
|
|
169
|
-
`How to use <docs/howto.rst>`__
|
|
162
|
+
`How to use <https://github.com/canorve/EllipSect/blob/master/docs/howto.rst>`__
|
|
163
|
+
|
|
170
164
|
|
|
171
|
-
**Script run
|
|
172
|
-
^^^^^^^^^^^^^^^
|
|
165
|
+
**Script run**:
|
|
173
166
|
|
|
174
167
|
If you want to use EllipSect inside your own python script, you can call
|
|
175
168
|
it in the following way:
|
|
@@ -193,12 +186,11 @@ it in the following way:
|
|
|
193
186
|
To check all the output variables besides AICrit and BulgeToTotal,
|
|
194
187
|
check:
|
|
195
188
|
|
|
196
|
-
`Output variables <docs/api.rst>`__
|
|
189
|
+
`Output variables <https://github.com/canorve/EllipSect/blob/master/docs/api.rst>`__
|
|
197
190
|
|
|
198
|
-
--------------
|
|
199
191
|
|
|
200
|
-
|
|
201
|
-
|
|
192
|
+
Questions?
|
|
193
|
+
-----------
|
|
202
194
|
|
|
203
195
|
Do you have any questions or suggestions? Please send an email to
|
|
204
196
|
canorve [at] gmail [dot] com or open an
|
|
@@ -207,18 +199,16 @@ canorve [at] gmail [dot] com or open an
|
|
|
207
199
|
I’m open to new ideas that can benefit the software *EllipSect* and the
|
|
208
200
|
*GALFIT* community
|
|
209
201
|
|
|
210
|
-
--------------
|
|
211
202
|
|
|
212
|
-
|
|
213
|
-
|
|
203
|
+
License
|
|
204
|
+
---------
|
|
214
205
|
|
|
215
206
|
The code is under the license of **GNU**
|
|
216
207
|
|
|
217
208
|
|
|
218
|
-
-----------
|
|
219
209
|
|
|
220
|
-
|
|
221
|
-
|
|
210
|
+
Cite as
|
|
211
|
+
--------
|
|
222
212
|
|
|
223
213
|
If you find this code useful, please cite as:
|
|
224
214
|
|
|
@@ -226,10 +216,9 @@ Añorve, C., Reyes-Amador, U., de Ramon Toledo, D., Ríos-López, E., & López-C
|
|
|
226
216
|
|
|
227
217
|
Zenodo repository: https://doi.org/10.5281/zenodo.14597845
|
|
228
218
|
|
|
229
|
-
--------------
|
|
230
219
|
|
|
231
|
-
|
|
232
|
-
|
|
220
|
+
References
|
|
221
|
+
-----------
|
|
233
222
|
|
|
234
223
|
Akaike, H. (1974). A New Look at the Statistical Model Identification.
|
|
235
224
|
IEEE Transactions on Automatic Control, 19, 716–723.
|
|
@@ -276,15 +265,17 @@ doi:10.1088/0004-6256/138/5/1417
|
|
|
276
265
|
|
|
277
266
|
Vikram, V., Wadadekar, Y., Kembhavi, A. K., & Vijayagovindan, G. V.
|
|
278
267
|
(2010). PYMORPH: automated galaxy structural parameter estimation using
|
|
279
|
-
PYTHON, 409(4), 1379–1392. doi:10.1111/j.1365-2966.2010.17426.x
|
|
268
|
+
PYTHON, 409(4), 1379–1392. doi:10.1111/j.1365-2966.2010.17426.x
|
|
280
269
|
|
|
281
|
-
|
|
282
|
-
|
|
270
|
+
|
|
271
|
+
Other Stuff
|
|
272
|
+
-----------
|
|
283
273
|
|
|
284
274
|
Check my other project GALFITtools
|
|
285
275
|
`here <https://github.com/canorve/GALFITools>`__
|
|
286
276
|
|
|
287
|
-
|
|
277
|
+
.. |A85a| image:: https://raw.githubusercontent.com/canorve/EllipSect/master/img/A85.cub.png
|
|
278
|
+
.. |A85b| image:: https://raw.githubusercontent.com/canorve/EllipSect/master/img/A85.def.png
|
|
279
|
+
|
|
280
|
+
|
|
288
281
|
|
|
289
|
-
.. |A85a| image:: img/A85.cub.png
|
|
290
|
-
.. |A85b| image:: img/A85.def.png
|
|
@@ -8,6 +8,7 @@ pyproject.toml
|
|
|
8
8
|
setup.cfg
|
|
9
9
|
setup.py
|
|
10
10
|
tox.ini
|
|
11
|
+
.github/workflows/publish-pypi.yml
|
|
11
12
|
docs/Makefile
|
|
12
13
|
docs/api.rst
|
|
13
14
|
docs/authors.rst
|
|
@@ -42,6 +43,8 @@ src/EllipSect.egg-info/dependency_links.txt
|
|
|
42
43
|
src/EllipSect.egg-info/entry_points.txt
|
|
43
44
|
src/EllipSect.egg-info/not-zip-safe
|
|
44
45
|
src/EllipSect.egg-info/requires.txt
|
|
46
|
+
src/EllipSect.egg-info/scm_file_list.json
|
|
47
|
+
src/EllipSect.egg-info/scm_version.json
|
|
45
48
|
src/EllipSect.egg-info/top_level.txt
|
|
46
49
|
src/ellipsect/__init__.py
|
|
47
50
|
src/ellipsect/ellipsectors.py
|
|
@@ -0,0 +1,71 @@
|
|
|
1
|
+
{
|
|
2
|
+
"files": [
|
|
3
|
+
"README.rst",
|
|
4
|
+
"CHANGELOG.rst",
|
|
5
|
+
"CONTRIBUTING.rst",
|
|
6
|
+
"pyproject.toml",
|
|
7
|
+
"setup.cfg",
|
|
8
|
+
"setup.py",
|
|
9
|
+
"tox.ini",
|
|
10
|
+
"CITATION.cff",
|
|
11
|
+
"LICENSE.txt",
|
|
12
|
+
"AUTHORS.rst",
|
|
13
|
+
"img/A85.log.png",
|
|
14
|
+
"img/A2029.ring.png",
|
|
15
|
+
"img/A85.con-cub.png",
|
|
16
|
+
"img/A85.def.png",
|
|
17
|
+
"img/A85.grid.png",
|
|
18
|
+
"img/A85.ranx1.png",
|
|
19
|
+
"img/A85.cub.png",
|
|
20
|
+
"img/A85.ell-cub.png",
|
|
21
|
+
"img/A85.rany1.png",
|
|
22
|
+
"img/A85.pix.png",
|
|
23
|
+
"img/A85.ranx2.png",
|
|
24
|
+
"img/A85.png",
|
|
25
|
+
"example/galfit.feedme",
|
|
26
|
+
"example/gal.fits",
|
|
27
|
+
"example/psf.fits",
|
|
28
|
+
"example/README",
|
|
29
|
+
"tests/test_ellipsect.py",
|
|
30
|
+
"tests/gal.fits",
|
|
31
|
+
"tests/imgblock.fits",
|
|
32
|
+
"tests/psf.fits",
|
|
33
|
+
"tests/conftest.py",
|
|
34
|
+
"tests/galfit.01",
|
|
35
|
+
".github/workflows/publish-pypi.yml",
|
|
36
|
+
"docs/api.rst",
|
|
37
|
+
"docs/contributing.rst",
|
|
38
|
+
"docs/requirements.txt",
|
|
39
|
+
"docs/license.rst",
|
|
40
|
+
"docs/howto.rst",
|
|
41
|
+
"docs/authors.rst",
|
|
42
|
+
"docs/index.rst",
|
|
43
|
+
"docs/conf.py",
|
|
44
|
+
"docs/readme.rst",
|
|
45
|
+
"docs/changelog.rst",
|
|
46
|
+
"docs/Makefile",
|
|
47
|
+
"docs/_static/.gitignore",
|
|
48
|
+
"src/ellipsect/__init__.py",
|
|
49
|
+
"src/ellipsect/ellipsectors.py",
|
|
50
|
+
"src/ellipsect/sky/__init__.py",
|
|
51
|
+
"src/ellipsect/sky/sky.py",
|
|
52
|
+
"src/ellipsect/sectors/num.py",
|
|
53
|
+
"src/ellipsect/sectors/sect.py",
|
|
54
|
+
"src/ellipsect/sectors/__init__.py",
|
|
55
|
+
"src/ellipsect/sectors/comp.py",
|
|
56
|
+
"src/ellipsect/sectors/ellip.py",
|
|
57
|
+
"src/ellipsect/inout/read.py",
|
|
58
|
+
"src/ellipsect/inout/prt.py",
|
|
59
|
+
"src/ellipsect/inout/__init__.py",
|
|
60
|
+
"src/ellipsect/inout/gfits.py",
|
|
61
|
+
"src/ellipsect/inout/galfit.py",
|
|
62
|
+
"src/ellipsect/inout/plots.py",
|
|
63
|
+
"src/ellipsect/phot/tidal.py",
|
|
64
|
+
"src/ellipsect/phot/__init__.py",
|
|
65
|
+
"src/ellipsect/phot/phot.py",
|
|
66
|
+
"src/ellipsect/phot/ned.py",
|
|
67
|
+
"src/ellipsect/lib/__init__.py",
|
|
68
|
+
"src/ellipsect/lib/clas.py",
|
|
69
|
+
"src/ellipsect/lib/libs.py"
|
|
70
|
+
]
|
|
71
|
+
}
|
|
@@ -26,6 +26,8 @@ from ellipsect.inout.prt import PrintFilesComps
|
|
|
26
26
|
from ellipsect.inout.galfit import conver2Sersic
|
|
27
27
|
from ellipsect.inout.galfit import GetReff
|
|
28
28
|
|
|
29
|
+
from matplotlib.ticker import AutoLocator, AutoMinorLocator, ScalarFormatter
|
|
30
|
+
|
|
29
31
|
def PlotSB(xradq, ysbq, ysberrq, xradm, ysbm, ysberrm, ellconf, scale):
|
|
30
32
|
""" Produces final best-fitting plot """
|
|
31
33
|
|
|
@@ -177,6 +179,9 @@ def PlotSB(xradq, ysbq, ysberrq, xradm, ysbm, ysberrm, ellconf, scale):
|
|
|
177
179
|
else:
|
|
178
180
|
axred.xaxis.set_minor_locator(AutoMinorLocator())
|
|
179
181
|
axred.xaxis.set_major_locator(AutoLocator())
|
|
182
|
+
axred.xaxis.set_major_formatter(ScalarFormatter())
|
|
183
|
+
axred.tick_params(axis="x", labelbottom=True)
|
|
184
|
+
|
|
180
185
|
|
|
181
186
|
|
|
182
187
|
|
|
@@ -135,8 +135,9 @@ def InitParsing():
|
|
|
135
135
|
|
|
136
136
|
|
|
137
137
|
parser.add_argument("-nc","--numcomp", type=int, help="component number to"
|
|
138
|
-
+ "select for galaxy center. Default = first component.
|
|
139
|
-
+ "
|
|
138
|
+
+ "select for galaxy center. Default = first component."
|
|
139
|
+
+ "If it is not 1, q and pa are taken from this component "
|
|
140
|
+
+ "The component order follows as it is shown in galfit file ",default=1)
|
|
140
141
|
|
|
141
142
|
|
|
142
143
|
parser.add_argument("-ae","--aext", type=float,
|
|
@@ -252,17 +253,27 @@ def ReadGALFITout(ellconf,galhead,galcomps):
|
|
|
252
253
|
hdu.writeto(galhead.tempmask, overwrite=True)
|
|
253
254
|
|
|
254
255
|
|
|
255
|
-
def GetEllInfo(ellconf,galcomps):
|
|
256
|
+
def GetEllInfo(ellconf, galcomps):
|
|
256
257
|
'''Gets geometry information from the last component'''
|
|
257
258
|
|
|
258
259
|
|
|
259
260
|
maskactive = (galcomps.Active == True)
|
|
260
261
|
|
|
262
|
+
|
|
261
263
|
if ellconf.flagq == False:
|
|
262
|
-
|
|
264
|
+
|
|
265
|
+
if ellconf.numcomp != 1:
|
|
266
|
+
ellconf.qarg = galcomps.AxRat[maskactive][ellconf.numcomp - 1]
|
|
267
|
+
else:
|
|
268
|
+
ellconf.qarg = galcomps.AxRat[maskactive][-1]
|
|
263
269
|
|
|
264
270
|
if ellconf.flagpa == False:
|
|
265
|
-
ellconf.
|
|
271
|
+
if ellconf.numcomp != 1:
|
|
272
|
+
ellconf.parg = galcomps.PosAng[maskactive][ellconf.numcomp - 1]
|
|
273
|
+
else:
|
|
274
|
+
ellconf.parg = galcomps.PosAng[maskactive][-1]
|
|
275
|
+
|
|
276
|
+
|
|
266
277
|
|
|
267
278
|
#for the center, it obtains it from the first component
|
|
268
279
|
#if ellconf.flagcent == False:
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|