EllipSect 3.4.3__tar.gz → 3.4.5__tar.gz

ellipsect-3.4.5/CITATION.cff

@@ -0,0 +1,67 @@
+cff-version: 1.2.0
+message: "If you use this software, please cite the associated paper in the preferred-citation section."
+title: "EllipSect: A surface brightness analysis tool for GALFIT output"
+type: software
+version: "v3.4.4"
+date-released: "2025-01-04"
+license: "GPL-3.0-only"
+doi: "10.5281/zenodo.14597845"
+url: "https://doi.org/10.5281/zenodo.14597845"
+repository-code: "https://github.com/canorve/EllipSect"
+abstract: "A surface brightness analysis and measurement tool for GALFIT output."
+keywords:
+  - astronomy
+  - astrophysics
+  - photometry
+  - galaxies
+  - surface brightness
+  - GALFIT
+
+authors:
+  - given-names: "Christopher"
+    family-names: "Añorve"
+    orcid: "https://orcid.org/0000-0002-3721-8869"
+    affiliation: "FACITE"
+  - given-names: "Ulises"
+    family-names: "Reyes-Amador"
+    orcid: "https://orcid.org/0000-0001-7707-7389"
+    affiliation: "IRyA-UNAM"
+  - given-names: "Diego"
+    family-names: "de Ramon Toledo"
+    affiliation: "FCC-BUAP"
+  - given-names: "Emmanuel"
+    family-names: "Ríos-López"
+    orcid: "https://orcid.org/0000-0002-4436-221X"
+    affiliation: "National Institute of Astrophysics, Optics and Electronics"
+  - given-names: "Omar"
+    family-names: "López-Cruz"
+    orcid: "https://orcid.org/0000-0002-1381-7437"
+    affiliation: "National Institute of Astrophysics, Optics and Electronics"
+
+preferred-citation:
+  type: article
+  title: "EllipSect: A Surface Brightness Analysis Tool for GALFIT 3"
+  doi: "10.22201/ia.30618649e.2026.62.01.7524"
+  url: "https://astronomia.unam.mx/journals/rmxaa/article/view/10.22201.ia.30618649e.2026.62.01.7524"
+  journal: "Revista Mexicana de Astronomía y Astrofísica"
+  year: 2026
+  volume: 62
+  issue: 1
+  pages: "76-86"
+  month: 3
+  authors:
+    - given-names: "Christopher"
+      family-names: "Añorve"
+      orcid: "https://orcid.org/0000-0002-3721-8869"
+    - given-names: "Ulises"
+      family-names: "Reyes-Amador"
+      orcid: "https://orcid.org/0000-0001-7707-7389"
+    - given-names: "Diego"
+      family-names: "de Ramon Toledo"
+    - given-names: "Emmanuel"
+      family-names: "Ríos-López"
+      orcid: "https://orcid.org/0000-0002-4436-221X"
+    - given-names: "Omar"
+      family-names: "López-Cruz"
+      orcid: "https://orcid.org/0000-0002-1381-7437"
+

{ellipsect-3.4.3 → ellipsect-3.4.5}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: EllipSect
-Version: 3.4.3
+Version: 3.4.5
 Summary: A surface brightness analysis tool for GALFIT output.
 Home-page: https://github.com/canorve/EllipSect
 Author: Christopher Añorve
@@ -20,6 +20,7 @@ Classifier: Natural Language :: English
 Classifier: Topic :: Scientific/Engineering :: Astronomy
 Description-Content-Type: text/x-rst; charset=UTF-8
 License-File: LICENSE.txt
+Requires-Dist: importlib-metadata; python_version < "3.8"
 Requires-Dist: importlib-metadata
 Requires-Dist: sphinx>=3.2.1
 Requires-Dist: numpy>=1.20.3
@@ -31,17 +32,31 @@ Provides-Extra: testing
 Requires-Dist: setuptools; extra == "testing"
 Requires-Dist: pytest; extra == "testing"
 Requires-Dist: pytest-cov; extra == "testing"
+Dynamic: license-file
 
 .. contents::
    :depth: 3
 ..
 
---------------
+
+=============
+
+.. image:: https://img.shields.io/pypi/v/EllipSect.svg
+    :alt: PyPI-Server
+    :target: https://pypi.org/project/EllipSect/
+
+.. image:: https://img.shields.io/badge/-PyScaffold-005CA0?logo=pyscaffold
+    :alt: Project generated with PyScaffold
+    :target: https://pyscaffold.org/
+
+.. image:: https://zenodo.org/badge/282223217.svg
+    :target: https://zenodo.org/badge/latestdoi/282223217
+
 
 **EllipSect**
 =============
 
-|DOI|
+
 
 EllipSect creates surface brightness profiles and extracts other
 photometric data from the GALFIT output peng et al. (2002).
@@ -207,10 +222,9 @@ The code is under the license of **GNU**
 
 If you find this code useful, please cite as:
 
-Añorve, Christopher, Ríos-López, Emmanuel, Reyes-Amador, 
-Ulises, & López-Cruz, Omar. (2022). canorve/EllipSect: 
-EllipSect v2.7.5 (v2.7.5). Zenodo. https://doi.org/10.5281/zenodo.6975592
+Añorve, C., Reyes-Amador, U., de Ramon Toledo, D., Ríos-López, E., & López-Cruz, O. (2026). EllipSect: A Surface Brightness Analysis Tool for GALFIT 3. Revista Mexicana de Astronomía y Astrofísica, 62(1). https://doi.org/10.22201/ia.30618649e.2026.62.01.7524
 
+Zenodo repository: https://doi.org/10.5281/zenodo.14597845
 
 --------------
 
@@ -267,12 +281,10 @@ PYTHON, 409(4), 1379–1392. doi:10.1111/j.1365-2966.2010.17426.x \__\_
 **Other Stuff**
 ---------------
 
-Check my others GALFIT tools
+Check my other project GALFITtools
 `here <https://github.com/canorve/GALFITools>`__
 
 --------------
 
-.. |DOI| image:: https://zenodo.org/badge/282223217.svg
-   :target: https://zenodo.org/badge/latestdoi/282223217
 .. |A85a| image:: img/A85.cub.png
 .. |A85b| image:: img/A85.def.png

{ellipsect-3.4.3 → ellipsect-3.4.5}/README.rst

@@ -2,12 +2,25 @@
    :depth: 3
 ..
 
---------------
+
+=============
+
+.. image:: https://img.shields.io/pypi/v/EllipSect.svg
+    :alt: PyPI-Server
+    :target: https://pypi.org/project/EllipSect/
+
+.. image:: https://img.shields.io/badge/-PyScaffold-005CA0?logo=pyscaffold
+    :alt: Project generated with PyScaffold
+    :target: https://pyscaffold.org/
+
+.. image:: https://zenodo.org/badge/282223217.svg
+    :target: https://zenodo.org/badge/latestdoi/282223217
+
 
 **EllipSect**
 =============
 
-|DOI|
+
 
 EllipSect creates surface brightness profiles and extracts other
 photometric data from the GALFIT output peng et al. (2002).
@@ -173,10 +186,9 @@ The code is under the license of **GNU**
 
 If you find this code useful, please cite as:
 
-Añorve, Christopher, Ríos-López, Emmanuel, Reyes-Amador, 
-Ulises, & López-Cruz, Omar. (2022). canorve/EllipSect: 
-EllipSect v2.7.5 (v2.7.5). Zenodo. https://doi.org/10.5281/zenodo.6975592
+Añorve, C., Reyes-Amador, U., de Ramon Toledo, D., Ríos-López, E., & López-Cruz, O. (2026). EllipSect: A Surface Brightness Analysis Tool for GALFIT 3. Revista Mexicana de Astronomía y Astrofísica, 62(1). https://doi.org/10.22201/ia.30618649e.2026.62.01.7524
 
+Zenodo repository: https://doi.org/10.5281/zenodo.14597845
 
 --------------
 
@@ -233,12 +245,10 @@ PYTHON, 409(4), 1379–1392. doi:10.1111/j.1365-2966.2010.17426.x \__\_
 **Other Stuff**
 ---------------
 
-Check my others GALFIT tools
+Check my other project GALFITtools
 `here <https://github.com/canorve/GALFITools>`__
 
 --------------
 
-.. |DOI| image:: https://zenodo.org/badge/282223217.svg
-   :target: https://zenodo.org/badge/latestdoi/282223217
 .. |A85a| image:: img/A85.cub.png
 .. |A85b| image:: img/A85.def.png

{ellipsect-3.4.3 → ellipsect-3.4.5}/docs/conf.py

@@ -88,7 +88,7 @@ master_doc = "index"
 
 # General information about the project.
 project = "EllipSect"
-copyright = "2022, Christopher Añorve"
+copyright = "2024, Christopher Añorve"
 
 # The version info for the project you're documenting, acts as replacement for
 # |version| and |release|, also used in various other places throughout the

{ellipsect-3.4.3 → ellipsect-3.4.5}/setup.cfg

@@ -31,6 +31,7 @@ package_dir =
 	
 	python_requires = >=3.8
 install_requires = 
+	importlib-metadata; python_version<"3.8"
 	importlib-metadata  #; python_version<"3.8"
 	sphinx>=3.2.1
 	numpy>=1.20.3
@@ -79,7 +80,7 @@ exclude =
 	docs/conf.py
 
 [pyscaffold]
-version = 4.2.1
+version = 4.5
 package = ellipsect
 extensions = 
 	no_skeleton

{ellipsect-3.4.3 → ellipsect-3.4.5}/setup.py

@@ -2,7 +2,7 @@
     Setup file for EllipSect.
     Use setup.cfg to configure your project.
 
-    This file was generated with PyScaffold 4.2.1.
+    This file was generated with PyScaffold 4.5.
     PyScaffold helps you to put up the scaffold of your new Python project.
     Learn more under: https://pyscaffold.org/
 """

{ellipsect-3.4.3 → ellipsect-3.4.5}/src/EllipSect.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: EllipSect
-Version: 3.4.3
+Version: 3.4.5
 Summary: A surface brightness analysis tool for GALFIT output.
 Home-page: https://github.com/canorve/EllipSect
 Author: Christopher Añorve
@@ -20,6 +20,7 @@ Classifier: Natural Language :: English
 Classifier: Topic :: Scientific/Engineering :: Astronomy
 Description-Content-Type: text/x-rst; charset=UTF-8
 License-File: LICENSE.txt
+Requires-Dist: importlib-metadata; python_version < "3.8"
 Requires-Dist: importlib-metadata
 Requires-Dist: sphinx>=3.2.1
 Requires-Dist: numpy>=1.20.3
@@ -31,17 +32,31 @@ Provides-Extra: testing
 Requires-Dist: setuptools; extra == "testing"
 Requires-Dist: pytest; extra == "testing"
 Requires-Dist: pytest-cov; extra == "testing"
+Dynamic: license-file
 
 .. contents::
    :depth: 3
 ..
 
---------------
+
+=============
+
+.. image:: https://img.shields.io/pypi/v/EllipSect.svg
+    :alt: PyPI-Server
+    :target: https://pypi.org/project/EllipSect/
+
+.. image:: https://img.shields.io/badge/-PyScaffold-005CA0?logo=pyscaffold
+    :alt: Project generated with PyScaffold
+    :target: https://pyscaffold.org/
+
+.. image:: https://zenodo.org/badge/282223217.svg
+    :target: https://zenodo.org/badge/latestdoi/282223217
+
 
 **EllipSect**
 =============
 
-|DOI|
+
 
 EllipSect creates surface brightness profiles and extracts other
 photometric data from the GALFIT output peng et al. (2002).
@@ -207,10 +222,9 @@ The code is under the license of **GNU**
 
 If you find this code useful, please cite as:
 
-Añorve, Christopher, Ríos-López, Emmanuel, Reyes-Amador, 
-Ulises, & López-Cruz, Omar. (2022). canorve/EllipSect: 
-EllipSect v2.7.5 (v2.7.5). Zenodo. https://doi.org/10.5281/zenodo.6975592
+Añorve, C., Reyes-Amador, U., de Ramon Toledo, D., Ríos-López, E., & López-Cruz, O. (2026). EllipSect: A Surface Brightness Analysis Tool for GALFIT 3. Revista Mexicana de Astronomía y Astrofísica, 62(1). https://doi.org/10.22201/ia.30618649e.2026.62.01.7524
 
+Zenodo repository: https://doi.org/10.5281/zenodo.14597845
 
 --------------
 
@@ -267,12 +281,10 @@ PYTHON, 409(4), 1379–1392. doi:10.1111/j.1365-2966.2010.17426.x \__\_
 **Other Stuff**
 ---------------
 
-Check my others GALFIT tools
+Check my other project GALFITtools
 `here <https://github.com/canorve/GALFITools>`__
 
 --------------
 
-.. |DOI| image:: https://zenodo.org/badge/282223217.svg
-   :target: https://zenodo.org/badge/latestdoi/282223217
 .. |A85a| image:: img/A85.cub.png
 .. |A85b| image:: img/A85.def.png

{ellipsect-3.4.3 → ellipsect-3.4.5}/src/EllipSect.egg-info/SOURCES.txt

@@ -1,5 +1,6 @@
 AUTHORS.rst
 CHANGELOG.rst
+CITATION.cff
 CONTRIBUTING.rst
 LICENSE.txt
 README.rst
@@ -24,7 +25,6 @@ example/gal.fits
 example/galfit.feedme
 example/psf.fits
 img/A2029.ring.png
-img/A85.comp.png
 img/A85.con-cub.png
 img/A85.cub.png
 img/A85.def.png

{ellipsect-3.4.3 → ellipsect-3.4.5}/src/EllipSect.egg-info/requires.txt

@@ -6,6 +6,9 @@ scipy>=1.5.2
 matplotlib>=3.5.2
 mgefit>=5.0.13
 
+[:python_version < "3.8"]
+importlib-metadata
+
 [testing]
 setuptools
 pytest

{ellipsect-3.4.3 → ellipsect-3.4.5}/src/ellipsect/__init__.py

@@ -1,8 +1,5 @@
 import sys
 
-from ellipsect.inout.read import ArgParsing
-from ellipsect.sectors.sect import SectorsGalfit 
-
 if sys.version_info[:2] >= (3, 8):
     # TODO: Import directly (no need for conditional) when `python_requires = >= 3.8`
     from importlib.metadata import PackageNotFoundError, version  # pragma: no cover

{ellipsect-3.4.3 → ellipsect-3.4.5}/src/ellipsect/inout/plots.py

@@ -33,13 +33,14 @@ def PlotSB(xradq, ysbq, ysberrq, xradm, ysbm, ysberrm, ellconf, scale):
     plt.close('all')
 
 
-
+    fig = plt.figure()  # optionally: figsize=(6.4, 4.8)
     #ULISES begin
     #fig, (axsec, axred) = plt.subplots(2, sharex=True, sharey=False)
-    gs = gridspec.GridSpec(2, 1,height_ratios=[3,1])
+    gs = gridspec.GridSpec(2, 1,height_ratios=[3,1],hspace=0.07)
     gs.update(hspace=0.07)
     #ULISES end 
 
+    fig.subplots_adjust(bottom=0.16, left=0.20, top=0.85)   # try 0.14–0.22
 
     if ellconf.flagranx == True:
         (xmin,xmax)=ellconf.ranx[0], ellconf.ranx[1]
@@ -58,9 +59,9 @@ def PlotSB(xradq, ysbq, ysberrq, xradm, ysbm, ysberrm, ellconf, scale):
 
    
     # ULISES begin
-    axsec = plt.subplot(gs[0])
-
-    axsec.set_ylabel(r"Surface Brightness $(mag\; arcsec^{-2})$")
+    #axsec = plt.subplot(gs[0])
+    axsec = fig.add_subplot(gs[0])
+    axsec.set_ylabel("Surface Brightness\n(mag arcsec$^{-2})$",labelpad=12)
     # ULISES end
 
     axsec.errorbar(xradq, ysbq, yerr=ysberrq,fmt='o-',capsize=2,color='red',markersize=0.7,label="galaxy",linewidth=2)
@@ -148,7 +149,9 @@ def PlotSB(xradq, ysbq, ysberrq, xradm, ysbm, ysberrm, ellconf, scale):
     err = ((ysbm/ysbq**2)**2) * ysberrq**2 + ((1/ysbq)**2) * ysberrm**2 
     err = np.sqrt(err)*100
 
-    axred = plt.subplot(gs[1])
+    #axred = plt.subplot(gs[1])
+    axred = fig.add_subplot(gs[1], sharex=axsec)
+
 
     if len(xradq) != len(residual):
         axred.errorbar(xradm, residual, yerr=err,fmt='.',capsize=2,color='k')
@@ -492,6 +495,8 @@ def PlotMul(ellconf, galhead, galcomps, mgegal, mgemod, mgecom):
 
     fig, axsec = plt.subplots(nrows, 2, sharex=True, sharey='col', num=fignum)
     fig.subplots_adjust(hspace=0.01)
+    fig.subplots_adjust(left=0.16)
+    fig.subplots_adjust(bottom=0.15)
 
 
 

{ellipsect-3.4.3 → ellipsect-3.4.5}/src/ellipsect/inout/read.py

@@ -167,6 +167,20 @@ def ReadGALFITout(ellconf,galhead,galcomps):
 
 
     galcomps = SelectGal(galcomps,ellconf.distmax,ellconf.numcomp)
+    
+    #removes blank files created by galfit
+    if os.path.isfile("none"):
+        print("Blank file none detected")
+        print("Removing...")
+        os.remove("none")
+        print("Removed")
+
+
+    if os.path.isfile("None"):
+        print("Blank file None detected")
+        print("Removing...")
+        os.remove("None")
+        print("Removed")
  
 
     errmsg="file {} does not exist".format(galhead.inputimage)

{ellipsect-3.4.3 → ellipsect-3.4.5}/src/ellipsect/phot/ned.py

@@ -71,7 +71,7 @@ def NED(ellconf):
                 #https://ned.ipac.caltech.edu/cgi-bin/nph-objsearch?extend=no&of=xml_all&objname=ngc+6166&hconst=67.8&omegam=0.308&omegav=0.692
 
 
-                wgetcmd = 'wget -O {} "{}{}&hconst={:.1f}\&omegam={:.3f}\&omegav={:.3f}"'.format(
+                wgetcmd = 'wget -O {} "{}{}&hconst={:.1f}\\&omegam={:.3f}\\&omegav={:.3f}"'.format(
                             filened,nedweb,objname,ellconf.hconst,ellconf.omegam,ellconf.omegav)
 
                 print("Running: ",wgetcmd)
@@ -94,7 +94,7 @@ def NED(ellconf):
 
 
         print("reading ",filened)
-        votable=parse(filened,pedantic=False) 
+        votable=parse(filened,verify='ignore') 
 
         try: 
             table=votable.get_table_by_index(0) 

{ellipsect-3.4.3 → ellipsect-3.4.5}/src/ellipsect/sectors/ellip.py

@@ -63,7 +63,17 @@ def EllipSectors(ellconf, galhead, galcomps, sectgalax, sectmodel, sectcomps, n_
         xradq, ysbq, n = SubComp(ellconf, galhead, galcomps, sectcomps, axsec, n_sectors = n_sectors)
 
 
-    axsec.legend(loc=1)
+    #axsec.legend(loc=1)
+
+    axsec.legend(
+        loc="upper right",
+        fontsize=8.5,
+        framealpha=0.8,   # semi-transparent
+        borderpad=0.3,
+        labelspacing=0.28,
+        handlelength=1.8,
+    )
+
 
     return limx,limy