DeConveil 0.1.3__tar.gz → 0.1.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (22) hide show
  1. {deconveil-0.1.3 → deconveil-0.1.4}/DeConveil.egg-info/PKG-INFO +1 -1
  2. {deconveil-0.1.3 → deconveil-0.1.4}/PKG-INFO +1 -1
  3. deconveil-0.1.4/deconveil/__version__.py +1 -0
  4. {deconveil-0.1.3 → deconveil-0.1.4}/deconveil/dds.py +1 -1
  5. {deconveil-0.1.3 → deconveil-0.1.4}/setup.py +1 -1
  6. deconveil-0.1.3/deconveil/__version__.py +0 -1
  7. {deconveil-0.1.3 → deconveil-0.1.4}/DeConveil.egg-info/SOURCES.txt +0 -0
  8. {deconveil-0.1.3 → deconveil-0.1.4}/DeConveil.egg-info/dependency_links.txt +0 -0
  9. {deconveil-0.1.3 → deconveil-0.1.4}/DeConveil.egg-info/requires.txt +0 -0
  10. {deconveil-0.1.3 → deconveil-0.1.4}/DeConveil.egg-info/top_level.txt +0 -0
  11. {deconveil-0.1.3 → deconveil-0.1.4}/LICENSE +0 -0
  12. {deconveil-0.1.3 → deconveil-0.1.4}/README.md +0 -0
  13. {deconveil-0.1.3 → deconveil-0.1.4}/deconveil/__init__.py +0 -0
  14. {deconveil-0.1.3 → deconveil-0.1.4}/deconveil/default_inference.py +0 -0
  15. {deconveil-0.1.3 → deconveil-0.1.4}/deconveil/ds.py +0 -0
  16. {deconveil-0.1.3 → deconveil-0.1.4}/deconveil/grid_search.py +0 -0
  17. {deconveil-0.1.3 → deconveil-0.1.4}/deconveil/inference.py +0 -0
  18. {deconveil-0.1.3 → deconveil-0.1.4}/deconveil/utils_clustering.py +0 -0
  19. {deconveil-0.1.3 → deconveil-0.1.4}/deconveil/utils_fit.py +0 -0
  20. {deconveil-0.1.3 → deconveil-0.1.4}/deconveil/utils_plot.py +0 -0
  21. {deconveil-0.1.3 → deconveil-0.1.4}/deconveil/utils_processing.py +0 -0
  22. {deconveil-0.1.3 → deconveil-0.1.4}/setup.cfg +0 -0
{deconveil-0.1.3 → deconveil-0.1.4}/DeConveil.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: DeConveil
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- Version: 0.1.3
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+ Version: 0.1.4
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  Summary: An extension of PyDESeq2/DESeq2 designed to account for genome aneuploidy
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  Home-page: https://github.com/caravagnalab/DeConveil
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  Author: Katsiaryna Davydzenka
{deconveil-0.1.3 → deconveil-0.1.4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: DeConveil
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- Version: 0.1.3
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+ Version: 0.1.4
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  Summary: An extension of PyDESeq2/DESeq2 designed to account for genome aneuploidy
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  Home-page: https://github.com/caravagnalab/DeConveil
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  Author: Katsiaryna Davydzenka
deconveil-0.1.4/deconveil/__version__.py ADDED
@@ -0,0 +1 @@
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+ __version__ = "0.1.4"
{deconveil-0.1.3 → deconveil-0.1.4}/deconveil/dds.py RENAMED
@@ -18,6 +18,7 @@ from deconveil.utils_fit import fit_moments_dispersions2
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  from deconveil.utils_fit import grid_fit_beta
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  from deconveil.utils_fit import irls_glm
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  from deconveil.utils_fit import build_design_matrix
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+ from deconveil.utils_processing import replace_underscores
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  from pydeseq2.preprocessing import deseq2_norm_fit
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  from pydeseq2.preprocessing import deseq2_norm_transform
@@ -25,7 +26,6 @@ from pydeseq2.utils import dispersion_trend
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  from pydeseq2.utils import mean_absolute_deviation
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  from pydeseq2.utils import n_or_more_replicates
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  from pydeseq2.utils import nb_nll
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- from pydeseq2.utils import replace_underscores
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  from pydeseq2.utils import robust_method_of_moments_disp
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  from pydeseq2.utils import test_valid_counts
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  from pydeseq2.utils import trimmed_mean
{deconveil-0.1.3 → deconveil-0.1.4}/setup.py RENAMED
@@ -6,7 +6,7 @@ long_description = (this_directory / "README.md").read_text()
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  setup(
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  name="DeConveil",
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- version="0.1.3",
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+ version="0.1.4",
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  description="An extension of PyDESeq2/DESeq2 designed to account for genome aneuploidy",
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  url="https://github.com/caravagnalab/DeConveil",
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  author="Katsiaryna Davydzenka",
deconveil-0.1.3/deconveil/__version__.py DELETED
@@ -1 +0,0 @@
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- __version__ = "0.1.3"
{deconveil-0.1.3 → deconveil-0.1.4}/LICENSE RENAMED
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{deconveil-0.1.3 → deconveil-0.1.4}/README.md RENAMED
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{deconveil-0.1.3 → deconveil-0.1.4}/deconveil/ds.py RENAMED
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{deconveil-0.1.3 → deconveil-0.1.4}/setup.cfg RENAMED
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