DEME 2.3.1__tar.gz → 2.3.3__tar.gz

{deme-2.3.1 → deme-2.3.3}/CMakeLists.txt

@@ -342,6 +342,11 @@ file(COPY ${CMAKE_CURRENT_LIST_DIR}/src/kernel/ DESTINATION ${CMAKE_BINARY_DIR}/
 file(COPY ${CMAKE_CURRENT_LIST_DIR}/src/DEM/Defines.h DESTINATION ${CMAKE_BINARY_DIR}/DEM)
 file(COPY ${CMAKE_CURRENT_LIST_DIR}/src/DEM/VariableTypes.h DESTINATION ${CMAKE_BINARY_DIR}/DEM)
 install(DIRECTORY ${CMAKE_CURRENT_LIST_DIR}/src/kernel/ DESTINATION ${CMAKE_INSTALL_DATADIR}/DEME/kernel/)
+install(DIRECTORY ${CMAKE_CURRENT_LIST_DIR}/src/kernel/ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/kernel/
+    FILES_MATCHING
+        PATTERN "*.cuh"
+        PATTERN "*.h"
+)
 
 # ---------------------------------------------------------------------------- #
 # Build embedded demos

{deme-2.3.1/deme.egg-info → deme-2.3.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: deme
-Version: 2.3.1
+Version: 2.3.3
 Summary: PyBind Wrapper Library for DEM-Engine
 Author: Ruochun Zhang
 Author-email: ruochunz@gmail.com

{deme-2.3.1 → deme-2.3.3/deme.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: deme
-Version: 2.3.1
+Version: 2.3.3
 Summary: PyBind Wrapper Library for DEM-Engine
 Author: Ruochun Zhang
 Author-email: ruochunz@gmail.com

{deme-2.3.1 → deme-2.3.3}/deme.egg-info/SOURCES.txt

@@ -202,13 +202,12 @@ thirdparty/pybind11/.gitignore
 thirdparty/pybind11/.pre-commit-config.yaml
 thirdparty/pybind11/.readthedocs.yml
 thirdparty/pybind11/CMakeLists.txt
+thirdparty/pybind11/CMakePresets.json
 thirdparty/pybind11/LICENSE
-thirdparty/pybind11/MANIFEST.in
 thirdparty/pybind11/README.rst
+thirdparty/pybind11/SECURITY.md
 thirdparty/pybind11/noxfile.py
 thirdparty/pybind11/pyproject.toml
-thirdparty/pybind11/setup.cfg
-thirdparty/pybind11/setup.py
 thirdparty/pybind11/.github/CODEOWNERS
 thirdparty/pybind11/.github/CONTRIBUTING.md
 thirdparty/pybind11/.github/dependabot.yml
@@ -220,16 +219,20 @@ thirdparty/pybind11/.github/ISSUE_TEMPLATE/config.yml
 thirdparty/pybind11/.github/matchers/pylint.json
 thirdparty/pybind11/.github/workflows/ci.yml
 thirdparty/pybind11/.github/workflows/configure.yml
+thirdparty/pybind11/.github/workflows/docs-link.yml
 thirdparty/pybind11/.github/workflows/format.yml
 thirdparty/pybind11/.github/workflows/labeler.yml
+thirdparty/pybind11/.github/workflows/nightlies.yml
 thirdparty/pybind11/.github/workflows/pip.yml
+thirdparty/pybind11/.github/workflows/reusable-standard.yml
+thirdparty/pybind11/.github/workflows/tests-cibw.yml
 thirdparty/pybind11/.github/workflows/upstream.yml
 thirdparty/pybind11/docs/Doxyfile
 thirdparty/pybind11/docs/Makefile
 thirdparty/pybind11/docs/basics.rst
 thirdparty/pybind11/docs/benchmark.py
 thirdparty/pybind11/docs/benchmark.rst
-thirdparty/pybind11/docs/changelog.rst
+thirdparty/pybind11/docs/changelog.md
 thirdparty/pybind11/docs/classes.rst
 thirdparty/pybind11/docs/compiling.rst
 thirdparty/pybind11/docs/conf.py
@@ -244,10 +247,13 @@ thirdparty/pybind11/docs/pybind11_vs_boost_python2.png
 thirdparty/pybind11/docs/pybind11_vs_boost_python2.svg
 thirdparty/pybind11/docs/reference.rst
 thirdparty/pybind11/docs/release.rst
+thirdparty/pybind11/docs/requirements.in
 thirdparty/pybind11/docs/requirements.txt
 thirdparty/pybind11/docs/upgrade.rst
 thirdparty/pybind11/docs/_static/css/custom.css
 thirdparty/pybind11/docs/advanced/classes.rst
+thirdparty/pybind11/docs/advanced/deadlock.md
+thirdparty/pybind11/docs/advanced/deprecated.rst
 thirdparty/pybind11/docs/advanced/embedding.rst
 thirdparty/pybind11/docs/advanced/exceptions.rst
 thirdparty/pybind11/docs/advanced/functions.rst
@@ -272,12 +278,16 @@ thirdparty/pybind11/include/pybind11/cast.h
 thirdparty/pybind11/include/pybind11/chrono.h
 thirdparty/pybind11/include/pybind11/common.h
 thirdparty/pybind11/include/pybind11/complex.h
+thirdparty/pybind11/include/pybind11/critical_section.h
 thirdparty/pybind11/include/pybind11/eigen.h
 thirdparty/pybind11/include/pybind11/embed.h
 thirdparty/pybind11/include/pybind11/eval.h
 thirdparty/pybind11/include/pybind11/functional.h
 thirdparty/pybind11/include/pybind11/gil.h
+thirdparty/pybind11/include/pybind11/gil_safe_call_once.h
+thirdparty/pybind11/include/pybind11/gil_simple.h
 thirdparty/pybind11/include/pybind11/iostream.h
+thirdparty/pybind11/include/pybind11/native_enum.h
 thirdparty/pybind11/include/pybind11/numpy.h
 thirdparty/pybind11/include/pybind11/operators.h
 thirdparty/pybind11/include/pybind11/options.h
@@ -285,13 +295,34 @@ thirdparty/pybind11/include/pybind11/pybind11.h
 thirdparty/pybind11/include/pybind11/pytypes.h
 thirdparty/pybind11/include/pybind11/stl.h
 thirdparty/pybind11/include/pybind11/stl_bind.h
+thirdparty/pybind11/include/pybind11/subinterpreter.h
+thirdparty/pybind11/include/pybind11/trampoline_self_life_support.h
+thirdparty/pybind11/include/pybind11/type_caster_pyobject_ptr.h
+thirdparty/pybind11/include/pybind11/typing.h
+thirdparty/pybind11/include/pybind11/warnings.h
+thirdparty/pybind11/include/pybind11/conduit/README.txt
+thirdparty/pybind11/include/pybind11/conduit/pybind11_conduit_v1.h
+thirdparty/pybind11/include/pybind11/conduit/pybind11_platform_abi_id.h
+thirdparty/pybind11/include/pybind11/conduit/wrap_include_python_h.h
+thirdparty/pybind11/include/pybind11/detail/argument_vector.h
 thirdparty/pybind11/include/pybind11/detail/class.h
 thirdparty/pybind11/include/pybind11/detail/common.h
+thirdparty/pybind11/include/pybind11/detail/cpp_conduit.h
 thirdparty/pybind11/include/pybind11/detail/descr.h
+thirdparty/pybind11/include/pybind11/detail/dynamic_raw_ptr_cast_if_possible.h
+thirdparty/pybind11/include/pybind11/detail/exception_translation.h
+thirdparty/pybind11/include/pybind11/detail/function_record_pyobject.h
+thirdparty/pybind11/include/pybind11/detail/holder_caster_foreign_helpers.h
 thirdparty/pybind11/include/pybind11/detail/init.h
 thirdparty/pybind11/include/pybind11/detail/internals.h
+thirdparty/pybind11/include/pybind11/detail/native_enum_data.h
+thirdparty/pybind11/include/pybind11/detail/pybind11_namespace_macros.h
+thirdparty/pybind11/include/pybind11/detail/struct_smart_holder.h
 thirdparty/pybind11/include/pybind11/detail/type_caster_base.h
 thirdparty/pybind11/include/pybind11/detail/typeid.h
+thirdparty/pybind11/include/pybind11/detail/using_smart_holder.h
+thirdparty/pybind11/include/pybind11/detail/value_and_holder.h
+thirdparty/pybind11/include/pybind11/eigen/common.h
 thirdparty/pybind11/include/pybind11/eigen/matrix.h
 thirdparty/pybind11/include/pybind11/eigen/tensor.h
 thirdparty/pybind11/include/pybind11/stl/filesystem.h
@@ -306,13 +337,21 @@ thirdparty/pybind11/tests/conftest.py
 thirdparty/pybind11/tests/constructor_stats.h
 thirdparty/pybind11/tests/cross_module_gil_utils.cpp
 thirdparty/pybind11/tests/cross_module_interleaved_error_already_set.cpp
+thirdparty/pybind11/tests/custom_exceptions.py
 thirdparty/pybind11/tests/eigen_tensor_avoid_stl_array.cpp
 thirdparty/pybind11/tests/env.py
+thirdparty/pybind11/tests/exo_planet_c_api.cpp
+thirdparty/pybind11/tests/exo_planet_pybind11.cpp
+thirdparty/pybind11/tests/home_planet_very_lonely_traveler.cpp
 thirdparty/pybind11/tests/local_bindings.h
+thirdparty/pybind11/tests/mod_per_interpreter_gil.cpp
+thirdparty/pybind11/tests/mod_per_interpreter_gil_with_singleton.cpp
+thirdparty/pybind11/tests/mod_shared_interpreter_gil.cpp
 thirdparty/pybind11/tests/object.h
 thirdparty/pybind11/tests/pybind11_cross_module_tests.cpp
 thirdparty/pybind11/tests/pybind11_tests.cpp
 thirdparty/pybind11/tests/pybind11_tests.h
+thirdparty/pybind11/tests/pyproject.toml
 thirdparty/pybind11/tests/pytest.ini
 thirdparty/pybind11/tests/requirements.txt
 thirdparty/pybind11/tests/test_async.cpp
@@ -329,16 +368,60 @@ thirdparty/pybind11/tests/test_chrono.cpp
 thirdparty/pybind11/tests/test_chrono.py
 thirdparty/pybind11/tests/test_class.cpp
 thirdparty/pybind11/tests/test_class.py
+thirdparty/pybind11/tests/test_class_cross_module_use_after_one_module_dealloc.cpp
+thirdparty/pybind11/tests/test_class_cross_module_use_after_one_module_dealloc.py
+thirdparty/pybind11/tests/test_class_release_gil_before_calling_cpp_dtor.cpp
+thirdparty/pybind11/tests/test_class_release_gil_before_calling_cpp_dtor.py
+thirdparty/pybind11/tests/test_class_sh_basic.cpp
+thirdparty/pybind11/tests/test_class_sh_basic.py
+thirdparty/pybind11/tests/test_class_sh_disowning.cpp
+thirdparty/pybind11/tests/test_class_sh_disowning.py
+thirdparty/pybind11/tests/test_class_sh_disowning_mi.cpp
+thirdparty/pybind11/tests/test_class_sh_disowning_mi.py
+thirdparty/pybind11/tests/test_class_sh_factory_constructors.cpp
+thirdparty/pybind11/tests/test_class_sh_factory_constructors.py
+thirdparty/pybind11/tests/test_class_sh_inheritance.cpp
+thirdparty/pybind11/tests/test_class_sh_inheritance.py
+thirdparty/pybind11/tests/test_class_sh_mi_thunks.cpp
+thirdparty/pybind11/tests/test_class_sh_mi_thunks.py
+thirdparty/pybind11/tests/test_class_sh_property.cpp
+thirdparty/pybind11/tests/test_class_sh_property.py
+thirdparty/pybind11/tests/test_class_sh_property_non_owning.cpp
+thirdparty/pybind11/tests/test_class_sh_property_non_owning.py
+thirdparty/pybind11/tests/test_class_sh_shared_ptr_copy_move.cpp
+thirdparty/pybind11/tests/test_class_sh_shared_ptr_copy_move.py
+thirdparty/pybind11/tests/test_class_sh_trampoline_basic.cpp
+thirdparty/pybind11/tests/test_class_sh_trampoline_basic.py
+thirdparty/pybind11/tests/test_class_sh_trampoline_self_life_support.cpp
+thirdparty/pybind11/tests/test_class_sh_trampoline_self_life_support.py
+thirdparty/pybind11/tests/test_class_sh_trampoline_shared_from_this.cpp
+thirdparty/pybind11/tests/test_class_sh_trampoline_shared_from_this.py
+thirdparty/pybind11/tests/test_class_sh_trampoline_shared_ptr_cpp_arg.cpp
+thirdparty/pybind11/tests/test_class_sh_trampoline_shared_ptr_cpp_arg.py
+thirdparty/pybind11/tests/test_class_sh_trampoline_unique_ptr.cpp
+thirdparty/pybind11/tests/test_class_sh_trampoline_unique_ptr.py
+thirdparty/pybind11/tests/test_class_sh_unique_ptr_custom_deleter.cpp
+thirdparty/pybind11/tests/test_class_sh_unique_ptr_custom_deleter.py
+thirdparty/pybind11/tests/test_class_sh_unique_ptr_member.cpp
+thirdparty/pybind11/tests/test_class_sh_unique_ptr_member.py
+thirdparty/pybind11/tests/test_class_sh_virtual_py_cpp_mix.cpp
+thirdparty/pybind11/tests/test_class_sh_virtual_py_cpp_mix.py
 thirdparty/pybind11/tests/test_const_name.cpp
 thirdparty/pybind11/tests/test_const_name.py
 thirdparty/pybind11/tests/test_constants_and_functions.cpp
 thirdparty/pybind11/tests/test_constants_and_functions.py
 thirdparty/pybind11/tests/test_copy_move.cpp
 thirdparty/pybind11/tests/test_copy_move.py
+thirdparty/pybind11/tests/test_cpp_conduit.cpp
+thirdparty/pybind11/tests/test_cpp_conduit.py
+thirdparty/pybind11/tests/test_cpp_conduit_traveler_bindings.h
+thirdparty/pybind11/tests/test_cpp_conduit_traveler_types.h
 thirdparty/pybind11/tests/test_custom_type_casters.cpp
 thirdparty/pybind11/tests/test_custom_type_casters.py
 thirdparty/pybind11/tests/test_custom_type_setup.cpp
 thirdparty/pybind11/tests/test_custom_type_setup.py
+thirdparty/pybind11/tests/test_docs_advanced_cast_custom.cpp
+thirdparty/pybind11/tests/test_docs_advanced_cast_custom.py
 thirdparty/pybind11/tests/test_docstring_options.cpp
 thirdparty/pybind11/tests/test_docstring_options.py
 thirdparty/pybind11/tests/test_eigen_matrix.cpp
@@ -370,10 +453,15 @@ thirdparty/pybind11/tests/test_modules.cpp
 thirdparty/pybind11/tests/test_modules.py
 thirdparty/pybind11/tests/test_multiple_inheritance.cpp
 thirdparty/pybind11/tests/test_multiple_inheritance.py
+thirdparty/pybind11/tests/test_multiple_interpreters.py
+thirdparty/pybind11/tests/test_native_enum.cpp
+thirdparty/pybind11/tests/test_native_enum.py
 thirdparty/pybind11/tests/test_numpy_array.cpp
 thirdparty/pybind11/tests/test_numpy_array.py
 thirdparty/pybind11/tests/test_numpy_dtypes.cpp
 thirdparty/pybind11/tests/test_numpy_dtypes.py
+thirdparty/pybind11/tests/test_numpy_scalars.cpp
+thirdparty/pybind11/tests/test_numpy_scalars.py
 thirdparty/pybind11/tests/test_numpy_vectorize.cpp
 thirdparty/pybind11/tests/test_numpy_vectorize.py
 thirdparty/pybind11/tests/test_opaque_types.cpp
@@ -382,8 +470,14 @@ thirdparty/pybind11/tests/test_operator_overloading.cpp
 thirdparty/pybind11/tests/test_operator_overloading.py
 thirdparty/pybind11/tests/test_pickling.cpp
 thirdparty/pybind11/tests/test_pickling.py
+thirdparty/pybind11/tests/test_potentially_slicing_weak_ptr.cpp
+thirdparty/pybind11/tests/test_potentially_slicing_weak_ptr.py
+thirdparty/pybind11/tests/test_python_multiple_inheritance.cpp
+thirdparty/pybind11/tests/test_python_multiple_inheritance.py
 thirdparty/pybind11/tests/test_pytypes.cpp
 thirdparty/pybind11/tests/test_pytypes.py
+thirdparty/pybind11/tests/test_scoped_critical_section.cpp
+thirdparty/pybind11/tests/test_scoped_critical_section.py
 thirdparty/pybind11/tests/test_sequences_and_iterators.cpp
 thirdparty/pybind11/tests/test_sequences_and_iterators.py
 thirdparty/pybind11/tests/test_smart_ptr.cpp
@@ -396,16 +490,31 @@ thirdparty/pybind11/tests/test_tagbased_polymorphic.cpp
 thirdparty/pybind11/tests/test_tagbased_polymorphic.py
 thirdparty/pybind11/tests/test_thread.cpp
 thirdparty/pybind11/tests/test_thread.py
+thirdparty/pybind11/tests/test_type_caster_pyobject_ptr.cpp
+thirdparty/pybind11/tests/test_type_caster_pyobject_ptr.py
+thirdparty/pybind11/tests/test_type_caster_std_function_specializations.cpp
+thirdparty/pybind11/tests/test_type_caster_std_function_specializations.py
 thirdparty/pybind11/tests/test_union.cpp
 thirdparty/pybind11/tests/test_union.py
+thirdparty/pybind11/tests/test_unnamed_namespace_a.cpp
+thirdparty/pybind11/tests/test_unnamed_namespace_a.py
+thirdparty/pybind11/tests/test_unnamed_namespace_b.cpp
+thirdparty/pybind11/tests/test_unnamed_namespace_b.py
+thirdparty/pybind11/tests/test_vector_unique_ptr_member.cpp
+thirdparty/pybind11/tests/test_vector_unique_ptr_member.py
 thirdparty/pybind11/tests/test_virtual_functions.cpp
 thirdparty/pybind11/tests/test_virtual_functions.py
+thirdparty/pybind11/tests/test_warnings.cpp
+thirdparty/pybind11/tests/test_warnings.py
 thirdparty/pybind11/tests/valgrind-numpy-scipy.supp
 thirdparty/pybind11/tests/valgrind-python.supp
 thirdparty/pybind11/tests/extra_python_package/pytest.ini
 thirdparty/pybind11/tests/extra_python_package/test_files.py
 thirdparty/pybind11/tests/extra_setuptools/pytest.ini
 thirdparty/pybind11/tests/extra_setuptools/test_setuphelper.py
+thirdparty/pybind11/tests/pure_cpp/CMakeLists.txt
+thirdparty/pybind11/tests/pure_cpp/smart_holder_poc.h
+thirdparty/pybind11/tests/pure_cpp/smart_holder_poc_test.cpp
 thirdparty/pybind11/tests/test_cmake_build/CMakeLists.txt
 thirdparty/pybind11/tests/test_cmake_build/embed.cpp
 thirdparty/pybind11/tests/test_cmake_build/main.cpp
@@ -416,12 +525,22 @@ thirdparty/pybind11/tests/test_cmake_build/installed_target/CMakeLists.txt
 thirdparty/pybind11/tests/test_cmake_build/subdirectory_embed/CMakeLists.txt
 thirdparty/pybind11/tests/test_cmake_build/subdirectory_function/CMakeLists.txt
 thirdparty/pybind11/tests/test_cmake_build/subdirectory_target/CMakeLists.txt
-thirdparty/pybind11/tests/test_embed/CMakeLists.txt
-thirdparty/pybind11/tests/test_embed/catch.cpp
-thirdparty/pybind11/tests/test_embed/external_module.cpp
-thirdparty/pybind11/tests/test_embed/test_interpreter.cpp
-thirdparty/pybind11/tests/test_embed/test_interpreter.py
-thirdparty/pybind11/tests/test_embed/test_trampoline.py
+thirdparty/pybind11/tests/test_cross_module_rtti/CMakeLists.txt
+thirdparty/pybind11/tests/test_cross_module_rtti/bindings.cpp
+thirdparty/pybind11/tests/test_cross_module_rtti/catch.cpp
+thirdparty/pybind11/tests/test_cross_module_rtti/lib.cpp
+thirdparty/pybind11/tests/test_cross_module_rtti/lib.h
+thirdparty/pybind11/tests/test_cross_module_rtti/test_cross_module_rtti.cpp
+thirdparty/pybind11/tests/test_with_catch/CMakeLists.txt
+thirdparty/pybind11/tests/test_with_catch/catch.cpp
+thirdparty/pybind11/tests/test_with_catch/catch_skip.h
+thirdparty/pybind11/tests/test_with_catch/external_module.cpp
+thirdparty/pybind11/tests/test_with_catch/test_args_convert_vector.cpp
+thirdparty/pybind11/tests/test_with_catch/test_argument_vector.cpp
+thirdparty/pybind11/tests/test_with_catch/test_interpreter.cpp
+thirdparty/pybind11/tests/test_with_catch/test_interpreter.py
+thirdparty/pybind11/tests/test_with_catch/test_subinterpreter.cpp
+thirdparty/pybind11/tests/test_with_catch/test_trampoline.py
 thirdparty/pybind11/tools/FindCatch.cmake
 thirdparty/pybind11/tools/FindEigen3.cmake
 thirdparty/pybind11/tools/FindPythonLibsNew.cmake
@@ -431,11 +550,11 @@ thirdparty/pybind11/tools/cmake_uninstall.cmake.in
 thirdparty/pybind11/tools/codespell_ignore_lines_from_errors.py
 thirdparty/pybind11/tools/libsize.py
 thirdparty/pybind11/tools/make_changelog.py
+thirdparty/pybind11/tools/make_global.py
 thirdparty/pybind11/tools/pybind11.pc.in
 thirdparty/pybind11/tools/pybind11Common.cmake
 thirdparty/pybind11/tools/pybind11Config.cmake.in
+thirdparty/pybind11/tools/pybind11GuessPythonExtSuffix.cmake
 thirdparty/pybind11/tools/pybind11NewTools.cmake
 thirdparty/pybind11/tools/pybind11Tools.cmake
-thirdparty/pybind11/tools/pyproject.toml
-thirdparty/pybind11/tools/setup_global.py.in
-thirdparty/pybind11/tools/setup_main.py.in
+thirdparty/pybind11/tools/test-pybind11GuessPythonExtSuffix.cmake

{deme-2.3.1 → deme-2.3.3}/setup.py

@@ -152,7 +152,7 @@ class CMakeBuild(build_ext):
 # logic and declaration, and simpler if you include description/version in a file.
 setup(
     name="deme",
-    version="2.3.1",
+    version="2.3.3",
     author="Ruochun Zhang",
     author_email="ruochunz@gmail.com",
     description="PyBind Wrapper Library for DEM-Engine",

{deme-2.3.1 → deme-2.3.3}/src/DEM/APIPublic.cpp

@@ -152,7 +152,7 @@ void DEMSolver::SetVerbosity(const std::string& verbose) {
             verbosity = VERBOSITY::QUIET;
             break;
         case ("ERROR"_):
-            verbosity = VERBOSITY::DEME_ERROR;
+            verbosity = VERBOSITY::ERR;
             break;
         case ("WARNING"_):
             verbosity = VERBOSITY::WARNING;

{deme-2.3.1 → deme-2.3.3}/src/DEM/Defines.h

@@ -134,7 +134,7 @@ constexpr float BIN_SIZE_MAX_CHANGE_RATE = 0.2;
 // Verbosity
 enum VERBOSITY {
     QUIET = 0,
-    DEME_ERROR = 10,
+    ERR = 10,
     WARNING = 20,
     INFO = 30,
     STEP_ANOMALY = 32,

{deme-2.3.1 → deme-2.3.3}/src/DEM/HostSideHelpers.hpp

@@ -8,6 +8,7 @@
 
 #include <iostream>
 #include <sstream>
+#include <cstdio>
 #include <list>
 #include <cmath>
 #include <set>
@@ -635,10 +636,16 @@ inline std::vector<double> FrameTransformGlobalToLocal(const std::vector<double>
 
 // Default accuracy is 17. This accuracy is especially needed for MOIs and length-unit (l).
 inline std::string to_string_with_precision(const double a_value, const unsigned int n = 17) {
-    std::ostringstream out;
-    out.precision(n);
-    out << std::fixed << a_value;
-    return out.str();
+    // Use snprintf with %.*f instead of ostringstream to avoid locale-dependent ABI issues.
+    // Buffer size: sign(1) + max integer digits for double(308) + decimal point(1) + n decimal digits + null(1).
+    const int buf_size = 1 + 308 + 1 + static_cast<int>(n) + 1;
+    std::string result(buf_size, '\0');
+    int len = std::snprintf(result.data(), result.size(), "%.*f", static_cast<int>(n), a_value);
+    if (len < 0 || len >= buf_size) {
+        throw std::runtime_error("to_string_with_precision: snprintf failed for value " + std::to_string(a_value));
+    }
+    result.resize(len);
+    return result;
 }
 
 // Release the memory allocated for an array

{deme-2.3.1 → deme-2.3.3}/src/DEM/PyDEME.cpp

@@ -1367,7 +1367,7 @@ PYBIND11_MODULE(DEME, obj) {
 
     py::enum_<deme::VERBOSITY>(obj, "VERBOSITY")
         .value("QUIET", deme::VERBOSITY::QUIET)
-        .value("ERROR", deme::VERBOSITY::DEME_ERROR)
+        .value("ERROR", deme::VERBOSITY::ERR)
         .value("WARNING", deme::VERBOSITY::WARNING)
         .value("INFO", deme::VERBOSITY::INFO)
         .value("STEP_ANOMALY", deme::VERBOSITY::STEP_ANOMALY)

{deme-2.3.1 → deme-2.3.3}/src/core/utils/JitHelper.cpp

@@ -11,6 +11,16 @@
 #include <sstream>
 #include <algorithm>
 #include <cstdlib>
+#include <stdexcept>
+
+#include <cuda_runtime_api.h>
+
+// Compile-time default CUDA architecture fallback.
+// Can be overridden at build time via -DDEME_DEFAULT_CUDA_ARCH_STR="compute_XY".
+// At runtime, the environment variable DEME_DEFAULT_CUDA_ARCH takes precedence.
+#ifndef DEME_DEFAULT_CUDA_ARCH_STR
+    #define DEME_DEFAULT_CUDA_ARCH_STR "compute_75"
+#endif
 
 #include <core/ApiVersion.h>
 #include "RuntimeData.h"
@@ -87,5 +97,53 @@ jitify::Program JitHelper::buildProgram(
     if (kcache == nullptr)
         kcache = new jitify::JitCache();
 
-    return kcache->program(code, header_code, flags);
+    // Stage 1: Explicit architecture detection.
+    // Query the active CUDA device compute capability and build an -arch flag.
+    {
+        int dev = 0;
+        cudaDeviceProp prop;
+        memset(&prop, 0, sizeof(prop));
+        if (cudaGetDevice(&dev) == cudaSuccess && cudaGetDeviceProperties(&prop, dev) == cudaSuccess &&
+            prop.major > 0 && prop.minor >= 0) {
+            std::string detected_arch = "compute_" + std::to_string(prop.major) + std::to_string(prop.minor);
+            std::vector<std::string> arch_flags = flags;
+            arch_flags.push_back("-arch=" + detected_arch);
+            return kcache->program(code, header_code, arch_flags);
+        }
+    }
+
+    // Stage 2: Jitify auto-detect.
+    // Device detection failed or returned an invalid compute capability; compile
+    // without an explicit -arch flag and let Jitify detect the architecture.
+    try {
+        return kcache->program(code, header_code, flags);
+    } catch (const std::exception& e) {
+        const std::string err_msg = e.what();
+        // Only fall through to Stage 3 when the failure is architecture-related.
+        const bool is_arch_error =
+            (err_msg.find("arch") != std::string::npos || err_msg.find("compute_") != std::string::npos ||
+             err_msg.find("sm_") != std::string::npos);
+        if (!is_arch_error) {
+            throw;
+        }
+
+        // Stage 3: Hardcoded default fallback.
+        // Use the DEME_DEFAULT_CUDA_ARCH environment variable if set; otherwise fall
+        // back to the compile-time constant DEME_DEFAULT_CUDA_ARCH_STR.
+        const char* env_arch = std::getenv("DEME_DEFAULT_CUDA_ARCH");
+        const std::string fallback_arch =
+            (env_arch != nullptr && env_arch[0] != '\0') ? std::string(env_arch) : DEME_DEFAULT_CUDA_ARCH_STR;
+        std::vector<std::string> fallback_flags = flags;
+        fallback_flags.push_back("-arch=" + fallback_arch);
+        try {
+            return kcache->program(code, header_code, fallback_flags);
+        } catch (const std::exception& e3) {
+            std::string ctx = "Jitify compilation failed with fallback arch '";
+            ctx += fallback_arch;
+            ctx += (env_arch != nullptr && env_arch[0] != '\0') ? "' (from DEME_DEFAULT_CUDA_ARCH env var): "
+                                                                : "' (compile-time default): ";
+            ctx += e3.what();
+            throw std::runtime_error(ctx);
+        }
+    }
 }

{deme-2.3.1 → deme-2.3.3}/thirdparty/jitify/jitify.hpp

@@ -852,12 +852,8 @@ struct type_reflection {
     // WAR for typeid discarding cv qualifiers on value-types
     // Wrap type in dummy template class to preserve cv-qualifiers, then strip
     // off the wrapper from the resulting string.
-  #ifdef _MSC_VER
-      std::string wrapped_name = typeid(JitifyTypeNameWrapper_<T>).name();
-  #else
-      std::string wrapped_name =
+    std::string wrapped_name =
         demangle_native_type(typeid(JitifyTypeNameWrapper_<T>));
-  #endif
     // Note: The reflected name of this class also has namespace prefixes.
     const std::string wrapper_class_name = "JitifyTypeNameWrapper_<";
     size_t start = wrapped_name.find(wrapper_class_name);

{deme-2.3.1 → deme-2.3.3}/thirdparty/jitify/nvrtc_cli.cpp

@@ -171,7 +171,14 @@ nvrtcResult compile_program(
   }
 #endif
 
-#if CUDART_VERSION >= 11040
+#if CUDART_VERSION >= 13000
+  size_t nvvm_size;
+  CHECK_NVRTC(nvrtcGetLTOIRSize(nvrtc_program, &nvvm_size));
+  if (nvvm_size) {
+    compiled->nvvm.resize(nvvm_size);
+    CHECK_NVRTC(nvrtcGetLTOIR(nvrtc_program, compiled->nvvm.data()));
+  }  
+#elif CUDART_VERSION >= 11040
   size_t nvvm_size;
   CHECK_NVRTC(nvrtcGetNVVMSize(nvrtc_program, &nvvm_size));
   if (nvvm_size) {

{deme-2.3.1 → deme-2.3.3}/thirdparty/pybind11/.appveyor.yml

@@ -9,7 +9,7 @@ platform:
 - x86
 environment:
   matrix:
-  - PYTHON: 36
+  - PYTHON: 38
     CONFIG: Debug
 install:
 - ps: |

{deme-2.3.1 → deme-2.3.3}/thirdparty/pybind11/.clang-tidy

@@ -48,7 +48,10 @@ Checks: |
   readability-misplaced-array-index,
   readability-non-const-parameter,
   readability-qualified-auto,
+  readability-redundant-casting,
   readability-redundant-function-ptr-dereference,
+  readability-redundant-inline-specifier,
+  readability-redundant-member-init,
   readability-redundant-smartptr-get,
   readability-redundant-string-cstr,
   readability-simplify-subscript-expr,
@@ -57,10 +60,13 @@ Checks: |
   readability-string-compare,
   readability-suspicious-call-argument,
   readability-uniqueptr-delete-release,
+  -bugprone-chained-comparison,
   -bugprone-easily-swappable-parameters,
   -bugprone-exception-escape,
   -bugprone-reserved-identifier,
   -bugprone-unused-raii,
+  -performance-enum-size,
+  -performance-inefficient-string-concatenation,
 
 CheckOptions:
 - key:             modernize-use-equals-default.IgnoreMacros

{deme-2.3.1 → deme-2.3.3}/thirdparty/pybind11/.codespell-ignore-lines

@@ -2,6 +2,7 @@ template <op_id id, op_type ot, typename L = undefined_t, typename R = undefined
     template <typename ThisT>
         auto &this_ = static_cast<ThisT &>(*this);
                 if (load_impl<ThisT>(temp, false)) {
+                return load_impl<ThisT>(src, false);
         ssize_t nd = 0;
         auto trivial = broadcast(buffers, nd, shape);
         auto ndim = (size_t) nd;
@@ -12,6 +13,17 @@ template <op_id id, op_type ot, typename L, typename R>
     template <detail::op_id id, detail::op_type ot, typename L, typename R, typename... Extra>
     class_ &def(const detail::op_<id, ot, L, R> &op, const Extra &...extra) {
     class_ &def_cast(const detail::op_<id, ot, L, R> &op, const Extra &...extra) {
+    int valu;
+    explicit movable_int(int v) : valu{v} {}
+    movable_int(movable_int &&other) noexcept : valu(other.valu) { other.valu = 91; }
+    explicit indestructible_int(int v) : valu{v} {}
+    REQUIRE(hld.as_raw_ptr_unowned<zombie>()->valu == 19);
+        REQUIRE(othr.valu == 19);
+        REQUIRE(orig.valu == 91);
+        (m.pass_valu, "Valu", "pass_valu:Valu(_MvCtor)*_CpCtor"),
+atyp_valu        rtrn_valu() { atyp_valu obj{"Valu"}; return obj; }
+    assert m.atyp_valu().get_mtxt() == "Valu"
+// valu(e), ref(erence), ptr or p (pointer), r = rvalue, m = mutable, c = const,
 @pytest.mark.parametrize("access", ["ro", "rw", "static_ro", "static_rw"])
 struct IntStruct {
     explicit IntStruct(int v) : value(v){};