CellProfiler-nightly 5.0.0.dev75__tar.gz → 5.0.0.dev82__tar.gz

{cellprofiler_nightly-5.0.0.dev75 → cellprofiler_nightly-5.0.0.dev82}/CellProfiler_nightly.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: CellProfiler-nightly
-Version: 5.0.0.dev75
+Version: 5.0.0.dev82
 Summary: CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.
 Author: Anne Carpenter, Thouis (Ray) Jones, Lee Kamentsky, Vebjorn Ljosa, David Logan, Mark Bray, Madison Swain-Bowden, Allen Goodman, Claire McQuinn, Alice Lucas, Callum Tromans-Coia
 Author-email: Beth Cimini <bcimini@broadinstitute.org>, David Stirling <dstirling@glencoesoftware.com>, Nodar Gogoberidze <ngogober@broadinstitute.org>

{cellprofiler_nightly-5.0.0.dev75 → cellprofiler_nightly-5.0.0.dev82}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: CellProfiler-nightly
-Version: 5.0.0.dev75
+Version: 5.0.0.dev82
 Summary: CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.
 Author: Anne Carpenter, Thouis (Ray) Jones, Lee Kamentsky, Vebjorn Ljosa, David Logan, Mark Bray, Madison Swain-Bowden, Allen Goodman, Claire McQuinn, Alice Lucas, Callum Tromans-Coia
 Author-email: Beth Cimini <bcimini@broadinstitute.org>, David Stirling <dstirling@glencoesoftware.com>, Nodar Gogoberidze <ngogober@broadinstitute.org>

{cellprofiler_nightly-5.0.0.dev75 → cellprofiler_nightly-5.0.0.dev82}/cellprofiler/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '5.0.0.dev75'
-__version_tuple__ = version_tuple = (5, 0, 0, 'dev75')
+__version__ = version = '5.0.0.dev82'
+__version_tuple__ = version_tuple = (5, 0, 0, 'dev82')

{cellprofiler_nightly-5.0.0.dev75 → cellprofiler_nightly-5.0.0.dev82}/cellprofiler/modules/classifyobjects.py

@@ -1080,7 +1080,7 @@ Select a name for the object set generated by your classifier.
 
         if self.show_window:
             workspace.display_data.in_high_class = in_high_class
-            workspace.display_data.labels = (objects.segmented,)
+            workspace.display_data.labels = objects.segmented
             workspace.display_data.saved_values = saved_values
 
     def display_two_measurements(self, workspace, figure):

{cellprofiler_nightly-5.0.0.dev75 → cellprofiler_nightly-5.0.0.dev82}/cellprofiler/modules/measureimageoverlap.py

@@ -346,6 +346,9 @@ the two images. Set this setting to “No” to assess no penalty.""",
             )
 
         if self.show_window:
+           
+            workspace.display_data.dimensions = test_image.dimensions
+           
             workspace.display_data.true_positives = data["true_positives"]
 
             workspace.display_data.true_negatives = data["true_negatives"]
@@ -376,7 +379,7 @@ the two images. Set this setting to “No” to assess no penalty.""",
 
     def display(self, workspace, figure):
         """Display the image confusion matrix & statistics"""
-        figure.set_subplots((3, 2))
+        figure.set_subplots((3, 2), dimensions=workspace.display_data.dimensions)
 
         for x, y, image, label in (
             (0, 0, workspace.display_data.true_positives, "True positives"),

{cellprofiler_nightly-5.0.0.dev75 → cellprofiler_nightly-5.0.0.dev82}/cellprofiler/modules/measureimagequality.py

@@ -1038,7 +1038,7 @@ to the foreground pixels or the background pixels.
                         if image_names in self.images_to_process(
                             image_group, None, pipeline
                         ):
-                            result += [scale_group.scale]
+                            result += [scale_group.scale.value]
                 return result
             if measurement.startswith(F_THRESHOLD):
                 result = []

{cellprofiler_nightly-5.0.0.dev75 → cellprofiler_nightly-5.0.0.dev82}/cellprofiler/modules/measureimageskeleton.py

@@ -199,8 +199,8 @@ You can create a morphological skeleton with the
 
         if object_name == "Image" and category == "Skeleton":
             return [
-                "Skeleton_Branches_{}".format(name),
-                "Skeleton_Endpoints_{}".format(name),
+                "Branches",
+                "Endpoints"
             ]
 
         return []