CellProfiler-nightly 5.0.0.dev74__tar.gz → 5.0.0.dev77__tar.gz

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Files changed (385) hide show
  1. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/CellProfiler_nightly.egg-info/PKG-INFO +1 -1
  2. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/PKG-INFO +1 -1
  3. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/_version.py +2 -2
  4. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/gaussianfilter.py +1 -1
  5. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measureimageoverlap.py +4 -1
  6. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/CellProfiler_nightly.egg-info/SOURCES.txt +0 -0
  7. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/CellProfiler_nightly.egg-info/dependency_links.txt +0 -0
  8. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/CellProfiler_nightly.egg-info/entry_points.txt +0 -0
  9. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/CellProfiler_nightly.egg-info/requires.txt +0 -0
  10. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/CellProfiler_nightly.egg-info/top_level.txt +0 -0
  11. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/LICENSE +0 -0
  12. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/README.md +0 -0
  13. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/__init__.py +0 -0
  14. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/__main__.py +0 -0
  15. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/examples/ExampleFly/ExampleFly.cppipe +0 -0
  16. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/examples/ExampleFly/images/01_POS002_D.TIF +0 -0
  17. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/examples/ExampleFly/images/01_POS002_F.TIF +0 -0
  18. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/examples/ExampleFly/images/01_POS002_R.TIF +0 -0
  19. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/examples/ExampleFly/images/01_POS076_D.TIF +0 -0
  20. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/examples/ExampleFly/images/01_POS076_F.TIF +0 -0
  21. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/examples/ExampleFly/images/01_POS076_R.TIF +0 -0
  22. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/examples/ExampleFly/images/01_POS218_D.TIF +0 -0
  23. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/examples/ExampleFly/images/01_POS218_F.TIF +0 -0
  24. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/examples/ExampleFly/images/01_POS218_R.TIF +0 -0
  25. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/display_image_tools.rst +0 -0
  26. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/display_interactive_navigation.rst +0 -0
  27. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/display_menu_bar.rst +0 -0
  28. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/legacy_matlab_image.rst +0 -0
  29. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/navigation_edit_menu.rst +0 -0
  30. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/navigation_file_menu.rst +0 -0
  31. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/navigation_test_menu.rst +0 -0
  32. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/navigation_window_menu.rst +0 -0
  33. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/other_3d_identify.rst +0 -0
  34. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/other_batch.rst +0 -0
  35. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/other_logging.rst +0 -0
  36. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/other_omero.rst +0 -0
  37. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/other_plugins.rst +0 -0
  38. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/other_shell.rst +0 -0
  39. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/other_troubleshooting.rst +0 -0
  40. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/other_widget_inspector.rst +0 -0
  41. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/output_measurements.rst +0 -0
  42. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/output_plateviewer.rst +0 -0
  43. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/output_spreadsheets.rst +0 -0
  44. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/pipelines_building.rst +0 -0
  45. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/pipelines_running.rst +0 -0
  46. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/projects_configure_images.rst +0 -0
  47. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/projects_image_ordering.rst +0 -0
  48. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/projects_image_sequences.rst +0 -0
  49. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/projects_introduction.rst +0 -0
  50. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/projects_selecting_images.rst +0 -0
  51. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/help/why_use_cellprofiler.rst +0 -0
  52. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler-favicon-120.png +0 -0
  53. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler-favicon-128.png +0 -0
  54. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler-favicon-144.png +0 -0
  55. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler-favicon-152.png +0 -0
  56. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler-favicon-195.png +0 -0
  57. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler-favicon-228.png +0 -0
  58. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler-favicon-32.png +0 -0
  59. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler-favicon-57.png +0 -0
  60. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler-favicon-72.png +0 -0
  61. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler-favicon-96.png +0 -0
  62. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler-favicon.ico +0 -0
  63. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler.ai +0 -0
  64. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler.icns +0 -0
  65. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler.ico +0 -0
  66. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler.png +0 -0
  67. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/icons/CellProfiler.svg +0 -0
  68. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/Align.png +0 -0
  69. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/ApplyThreshold.png +0 -0
  70. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/CollapseTree.png +0 -0
  71. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/ColorToGray.png +0 -0
  72. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/CorrectIlluminationApply.png +0 -0
  73. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/CorrectIlluminationCalculate.png +0 -0
  74. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/Crop.png +0 -0
  75. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/ExpandOrShrinkObjects.png +0 -0
  76. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/ExpandTree.png +0 -0
  77. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/GrayToColor.png +0 -0
  78. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/Groups_ExampleDisplayTable.png +0 -0
  79. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_ANALYZED.png +0 -0
  80. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_ANALYZE_16.png +0 -0
  81. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_ANALYZE_24.png +0 -0
  82. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_CLOSED_EYE.png +0 -0
  83. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_DISABLED.png +0 -0
  84. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_ERROR.png +0 -0
  85. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_EYE.png +0 -0
  86. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_GO.png +0 -0
  87. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_GO_DIM.png +0 -0
  88. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_IMAGE.png +0 -0
  89. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_MEASURE.png +0 -0
  90. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_OK.png +0 -0
  91. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_PAUSE.png +0 -0
  92. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_RUN.png +0 -0
  93. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_SLIDER.png +0 -0
  94. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_SLIDER_ACTIVE.png +0 -0
  95. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_STOP.png +0 -0
  96. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_TEST.png +0 -0
  97. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_UNAVAILABLE.png +0 -0
  98. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_UPDATE.png +0 -0
  99. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_USE_INPUT.png +0 -0
  100. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_USE_OUTPUT.png +0 -0
  101. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_USE_SOURCE.png +0 -0
  102. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IMG_WARN.png +0 -0
  103. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IdentifyPrimaryObjects_IntensityDeclumping.png +0 -0
  104. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IdentifyPrimaryObjects_ShapeDeclumping.png +0 -0
  105. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IdentifySecondaryObjects.png +0 -0
  106. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/IdentifyTertiaryObjects.png +0 -0
  107. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/Images_FilelistPanel.png +0 -0
  108. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/Images_FilelistPanel_Blank.png +0 -0
  109. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/Images_FilelistPanel_Filled.png +0 -0
  110. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/Images_UsingRules.png +0 -0
  111. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/MeasureGranularity_example.png +0 -0
  112. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/MeasureImageAreaOccupied.png +0 -0
  113. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/MeasureObjectIntensityDistribution_Edges_Centers.png +0 -0
  114. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/MeasureObjectIntensityDistribution_Magnitude_Phase.png +0 -0
  115. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/MeasureObjectSizeShape_Eccentricity.png +0 -0
  116. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/MeasureTexture.png +0 -0
  117. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/Measure_texture_3D_correspondences_1.png +0 -0
  118. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/Measure_texture_3D_correspondences_1_highres.png +0 -0
  119. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/Measure_texture_3D_correspondences_2.png +0 -0
  120. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/Measure_texture_3D_correspondences_2_highres.png +0 -0
  121. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/Metadata_ExampleDisplayTable.png +0 -0
  122. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/NamesAndTypes_ExampleDisplayTable.png +0 -0
  123. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/Tile.png +0 -0
  124. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/UnmixColors.png +0 -0
  125. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/check.png +0 -0
  126. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/color.png +0 -0
  127. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/cp_panel_schematic.png +0 -0
  128. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/dapi.png +0 -0
  129. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/delete.png +0 -0
  130. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/downarrow.png +0 -0
  131. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/data/images/eye-close.png +0 -0
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  279. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/gui/workspace_view/_workspace_view_figure.py +0 -0
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  281. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/gui/workspace_view/_workspace_view_mask_row.py +0 -0
  282. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/gui/workspace_view/_workspace_view_measurement_row.py +0 -0
  283. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/gui/workspace_view/_workspace_view_objects_row.py +0 -0
  284. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/gui/workspace_view/_workspace_view_row.py +0 -0
  285. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/icons/__init__.py +0 -0
  286. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/knime_bridge.py +0 -0
  287. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/misc.py +0 -0
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  293. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/classifyobjects.py +0 -0
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  297. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/convertimagetoobjects.py +0 -0
  298. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/convertobjectstoimage.py +0 -0
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  300. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/correctilluminationcalculate.py +0 -0
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  304. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/dilateimage.py +0 -0
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  306. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/displaydataonimage.py +0 -0
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  310. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/displayscatterplot.py +0 -0
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  313. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/enhanceorsuppressfeatures.py +0 -0
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  318. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/exporttospreadsheet.py +0 -0
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  322. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/flagimage.py +0 -0
  323. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/flipandrotate.py +0 -0
  324. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/graytocolor.py +0 -0
  325. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/identifydeadworms.py +0 -0
  326. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/identifyobjectsingrid.py +0 -0
  327. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/identifyobjectsmanually.py +0 -0
  328. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/identifyprimaryobjects.py +0 -0
  329. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/identifysecondaryobjects.py +0 -0
  330. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/identifytertiaryobjects.py +0 -0
  331. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/imagemath.py +0 -0
  332. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/invertforprinting.py +0 -0
  333. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/labelimages.py +0 -0
  334. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/makeprojection.py +0 -0
  335. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/maskimage.py +0 -0
  336. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/maskobjects.py +0 -0
  337. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/matchtemplate.py +0 -0
  338. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measurecolocalization.py +0 -0
  339. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measuregranularity.py +0 -0
  340. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measureimageareaoccupied.py +0 -0
  341. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measureimageintensity.py +0 -0
  342. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measureimagequality.py +0 -0
  343. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measureimageskeleton.py +0 -0
  344. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measureobjectintensity.py +0 -0
  345. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measureobjectintensitydistribution.py +0 -0
  346. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measureobjectneighbors.py +0 -0
  347. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measureobjectoverlap.py +0 -0
  348. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measureobjectsizeshape.py +0 -0
  349. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measureobjectskeleton.py +0 -0
  350. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measuretexture.py +0 -0
  351. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/medialaxis.py +0 -0
  352. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/medianfilter.py +0 -0
  353. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/morph.py +0 -0
  354. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/morphologicalskeleton.py +0 -0
  355. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/opening.py +0 -0
  356. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/overlayobjects.py +0 -0
  357. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/overlayoutlines.py +0 -0
  358. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/plugins/__init__.py +0 -0
  359. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/plugins/imagetemplate.py +0 -0
  360. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/plugins/measurementtemplate.py +0 -0
  361. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/reducenoise.py +0 -0
  362. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/relateobjects.py +0 -0
  363. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/removeholes.py +0 -0
  364. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/rescaleintensity.py +0 -0
  365. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/resize.py +0 -0
  366. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/resizeobjects.py +0 -0
  367. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/runimagejmacro.py +0 -0
  368. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/savecroppedobjects.py +0 -0
  369. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/saveimages.py +0 -0
  370. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/shrinktoobjectcenters.py +0 -0
  371. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/smooth.py +0 -0
  372. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/splitormergeobjects.py +0 -0
  373. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/straightenworms.py +0 -0
  374. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/threshold.py +0 -0
  375. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/tile.py +0 -0
  376. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/trackobjects.py +0 -0
  377. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/unmixcolors.py +0 -0
  378. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/untangleworms.py +0 -0
  379. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/watershed.py +0 -0
  380. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/utilities/__init__.py +0 -0
  381. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/utilities/morphology.py +0 -0
  382. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/utilities/rules.py +0 -0
  383. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/environment.yml +0 -0
  384. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/pyproject.toml +0 -0
  385. {cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/setup.cfg +0 -0
{cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/CellProfiler_nightly.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: CellProfiler-nightly
3
- Version: 5.0.0.dev74
3
+ Version: 5.0.0.dev77
4
4
  Summary: CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.
5
5
  Author: Anne Carpenter, Thouis (Ray) Jones, Lee Kamentsky, Vebjorn Ljosa, David Logan, Mark Bray, Madison Swain-Bowden, Allen Goodman, Claire McQuinn, Alice Lucas, Callum Tromans-Coia
6
6
  Author-email: Beth Cimini <bcimini@broadinstitute.org>, David Stirling <dstirling@glencoesoftware.com>, Nodar Gogoberidze <ngogober@broadinstitute.org>
{cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: CellProfiler-nightly
3
- Version: 5.0.0.dev74
3
+ Version: 5.0.0.dev77
4
4
  Summary: CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.
5
5
  Author: Anne Carpenter, Thouis (Ray) Jones, Lee Kamentsky, Vebjorn Ljosa, David Logan, Mark Bray, Madison Swain-Bowden, Allen Goodman, Claire McQuinn, Alice Lucas, Callum Tromans-Coia
6
6
  Author-email: Beth Cimini <bcimini@broadinstitute.org>, David Stirling <dstirling@glencoesoftware.com>, Nodar Gogoberidze <ngogober@broadinstitute.org>
{cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/_version.py RENAMED
@@ -12,5 +12,5 @@ __version__: str
12
12
  __version_tuple__: VERSION_TUPLE
13
13
  version_tuple: VERSION_TUPLE
14
14
 
15
- __version__ = version = '5.0.0.dev74'
16
- __version_tuple__ = version_tuple = (5, 0, 0, 'dev74')
15
+ __version__ = version = '5.0.0.dev77'
16
+ __version_tuple__ = version_tuple = (5, 0, 0, 'dev77')
{cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/gaussianfilter.py RENAMED
@@ -2,7 +2,7 @@
2
2
  GaussianFilter
3
3
  ==============
4
4
 
5
- **GuassianFilter** will blur an image and remove noise. Filtering an
5
+ **GaussianFilter** will blur an image and remove noise. Filtering an
6
6
  image with a Gaussian filter can be helpful if the foreground signal is
7
7
  noisy or near the noise floor.
8
8
 
{cellprofiler_nightly-5.0.0.dev74 → cellprofiler_nightly-5.0.0.dev77}/cellprofiler/modules/measureimageoverlap.py RENAMED
@@ -346,6 +346,9 @@ the two images. Set this setting to “No” to assess no penalty.""",
346
346
  )
347
347
 
348
348
  if self.show_window:
349
+
350
+ workspace.display_data.dimensions = test_image.dimensions
351
+
349
352
  workspace.display_data.true_positives = data["true_positives"]
350
353
 
351
354
  workspace.display_data.true_negatives = data["true_negatives"]
@@ -376,7 +379,7 @@ the two images. Set this setting to “No” to assess no penalty.""",
376
379
 
377
380
  def display(self, workspace, figure):
378
381
  """Display the image confusion matrix & statistics"""
379
- figure.set_subplots((3, 2))
382
+ figure.set_subplots((3, 2), dimensions=workspace.display_data.dimensions)
380
383
 
381
384
  for x, y, image, label in (
382
385
  (0, 0, workspace.display_data.true_positives, "True positives"),