CUQIpy 1.4.0.post0.dev92__tar.gz → 1.4.0.post0.dev101__tar.gz

{cuqipy-1.4.0.post0.dev92 → cuqipy-1.4.0.post0.dev101}/CUQIpy.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: CUQIpy
-Version: 1.4.0.post0.dev92
+Version: 1.4.0.post0.dev101
 Summary: Computational Uncertainty Quantification for Inverse problems in Python
 Maintainer-email: "Nicolai A. B. Riis" <nabr@dtu.dk>, "Jakob S. Jørgensen" <jakj@dtu.dk>, "Amal M. Alghamdi" <amaal@dtu.dk>, Chao Zhang <chaz@dtu.dk>
 License:                                  Apache License

{cuqipy-1.4.0.post0.dev92 → cuqipy-1.4.0.post0.dev101}/CUQIpy.egg-info/SOURCES.txt

@@ -42,7 +42,7 @@ cuqi/distribution/_joint_distribution.py
 cuqi/distribution/_laplace.py
 cuqi/distribution/_lmrf.py
 cuqi/distribution/_lognormal.py
-cuqi/distribution/_modifiedhalfnormal.py
+cuqi/distribution/_modified_half_normal.py
 cuqi/distribution/_normal.py
 cuqi/distribution/_posterior.py
 cuqi/distribution/_smoothed_laplace.py
@@ -54,9 +54,9 @@ cuqi/geometry/__init__.py
 cuqi/geometry/_geometry.py
 cuqi/geometry/_product_geometry.py
 cuqi/implicitprior/__init__.py
-cuqi/implicitprior/_regularizedGMRF.py
-cuqi/implicitprior/_regularizedGaussian.py
-cuqi/implicitprior/_regularizedUnboundedUniform.py
+cuqi/implicitprior/_regularized_gaussian.py
+cuqi/implicitprior/_regularized_gmrf.py
+cuqi/implicitprior/_regularized_unbounded_uniform.py
 cuqi/implicitprior/_restorator.py
 cuqi/legacy/__init__.py
 cuqi/legacy/sampler/__init__.py
@@ -104,7 +104,6 @@ cuqi/testproblem/_testproblem.py
 cuqi/utilities/__init__.py
 cuqi/utilities/_get_python_variable_name.py
 cuqi/utilities/_utilities.py
-tests/test_MRFs.py
 tests/test_abstract_distribution_density.py
 tests/test_algebra.py
 tests/test_bayesian_inversion.py
@@ -117,6 +116,7 @@ tests/test_joint_distribution.py
 tests/test_legacy_sampler.py
 tests/test_likelihood.py
 tests/test_model.py
+tests/test_mrfs.py
 tests/test_pde.py
 tests/test_posterior.py
 tests/test_problem.py

{cuqipy-1.4.0.post0.dev92 → cuqipy-1.4.0.post0.dev101}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: CUQIpy
-Version: 1.4.0.post0.dev92
+Version: 1.4.0.post0.dev101
 Summary: Computational Uncertainty Quantification for Inverse problems in Python
 Maintainer-email: "Nicolai A. B. Riis" <nabr@dtu.dk>, "Jakob S. Jørgensen" <jakj@dtu.dk>, "Amal M. Alghamdi" <amaal@dtu.dk>, Chao Zhang <chaz@dtu.dk>
 License:                                  Apache License

{cuqipy-1.4.0.post0.dev92 → cuqipy-1.4.0.post0.dev101}/cuqi/_version.py

@@ -8,11 +8,11 @@ import json
 
 version_json = '''
 {
- "date": "2025-11-24T16:04:21+0100",
+ "date": "2025-11-27T07:17:19+0100",
  "dirty": false,
  "error": null,
- "full-revisionid": "d6622bf24d4986794de75feebd950e695d1da212",
- "version": "1.4.0.post0.dev92"
+ "full-revisionid": "439c46b8411ea3990f38b3f2f66025ad0868034c",
+ "version": "1.4.0.post0.dev101"
 }
 '''  # END VERSION_JSON
 

{cuqipy-1.4.0.post0.dev92 → cuqipy-1.4.0.post0.dev101}/cuqi/distribution/__init__.py

@@ -3,7 +3,7 @@ from ._beta import Beta
 from ._cauchy import Cauchy
 from ._cmrf import CMRF
 from ._gamma import Gamma
-from ._modifiedhalfnormal import ModifiedHalfNormal
+from ._modified_half_normal import ModifiedHalfNormal
 from ._gaussian import Gaussian, JointGaussianSqrtPrec
 from ._gmrf import GMRF
 from ._inverse_gamma import InverseGamma

cuqipy-1.4.0.post0.dev101/cuqi/implicitprior/__init__.py

@@ -0,0 +1,5 @@
+from ._regularized_gaussian import RegularizedGaussian, ConstrainedGaussian, NonnegativeGaussian
+from ._regularized_gmrf import RegularizedGMRF, ConstrainedGMRF, NonnegativeGMRF
+from ._regularized_unbounded_uniform import RegularizedUnboundedUniform
+from ._restorator import RestorationPrior, MoreauYoshidaPrior, TweediePrior
+

{cuqipy-1.4.0.post0.dev92 → cuqipy-1.4.0.post0.dev101}/cuqi/legacy/sampler/_langevin_algorithm.py

@@ -60,7 +60,7 @@ class ULA(Sampler):
         # Sample
         samples = sampler.sample(2000)
 
-    A Deblur example can be found in demos/demo27_ULA.py
+    A Deblur example can be found in demos/demo27_ula.py
     """
     def __init__(self, target, scale, x0=None, dim=None, rng=None, **kwargs):
         super().__init__(target, x0=x0, dim=dim, **kwargs)
@@ -167,7 +167,7 @@ class MALA(ULA):
         # Sample
         samples = sampler.sample(2000)
 
-    A Deblur example can be found in demos/demo28_MALA.py
+    A Deblur example can be found in demos/demo28_mala.py
     """
     def __init__(self, target, scale, x0=None, dim=None, rng=None, **kwargs):
         super().__init__(target, scale, x0=x0, dim=dim, rng=rng, **kwargs)

{cuqipy-1.4.0.post0.dev92 → cuqipy-1.4.0.post0.dev101}/cuqi/pde/_observation_map.py

@@ -5,7 +5,7 @@ This module contains observation map examples for PDE problems. The map can
 be passed to the `PDE` object initializer via the `observation_map` argument.
 
 For example on how to use set observation maps in time dependent PDEs, see
-`demos/howtos/TimeDependentLinearPDE.py`.
+`demos/howtos/time_dependent_linear_pde.py`.
 """
 
 # 1. Steady State Observation Maps

{cuqipy-1.4.0.post0.dev92 → cuqipy-1.4.0.post0.dev101}/cuqi/pde/_pde.py

@@ -209,7 +209,7 @@ class SteadyStateLinearPDE(LinearPDE):
 
     Example
     -------- 
-    See demo demos/demo24_fwd_poisson.py for an illustration on how to use SteadyStateLinearPDE with varying solver choices. And demos demos/demo25_fwd_poisson_2D.py and demos/demo26_fwd_poisson_mixedBC.py for examples with mixed (Dirichlet and Neumann) boundary conditions problems. demos/demo25_fwd_poisson_2D.py also illustrates how to observe on a specific boundary, for example.
+    See demo demos/demo24_fwd_poisson.py for an illustration on how to use SteadyStateLinearPDE with varying solver choices. And demos demos/demo25_fwd_poisson_2d.py and demos/demo26_fwd_poisson_mixed_bc.py for examples with mixed (Dirichlet and Neumann) boundary conditions problems. demos/demo25_fwd_poisson_2d.py also illustrates how to observe on a specific boundary, for example.
     """
 
     def __init__(self, PDE_form, observation_map=None, **kwargs):
@@ -275,7 +275,7 @@ class TimeDependentLinearPDE(LinearPDE):
  
     Example
     -----------  
-    See demos/howtos/TimeDependentLinearPDE.py for 1D heat and 1D wave equations examples. It demonstrates setting up `TimeDependentLinearPDE` objects, including the choice of time stepping methods, observation domain, and observation map.
+    See demos/howtos/time_dependent_linear_pde.py for 1D heat and 1D wave equations examples. It demonstrates setting up `TimeDependentLinearPDE` objects, including the choice of time stepping methods, observation domain, and observation map.
     """
 
     def __init__(self, PDE_form, time_steps, time_obs='final',

{cuqipy-1.4.0.post0.dev92 → cuqipy-1.4.0.post0.dev101}/cuqi/sampler/_langevin_algorithm.py

@@ -60,7 +60,7 @@ class ULA(Sampler): # Refactor to Proposal-based sampler?
         # Sample
         sampler.sample(2000)
 
-    A Deblur example can be found in demos/demo27_ULA.py
+    A Deblur example can be found in demos/demo27_ula.py
     # TODO: update demo once sampler merged
     """
 
@@ -190,7 +190,7 @@ class MALA(ULA): # Refactor to Proposal-based sampler?
         # Sample
         sampler.sample(2000)
 
-    A Deblur example can be found in demos/demo28_MALA.py
+    A Deblur example can be found in demos/demo28_mala.py
     # TODO: update demo once sampler merged
     """
 

{cuqipy-1.4.0.post0.dev92 → cuqipy-1.4.0.post0.dev101}/tests/test_z_mcmc.py

@@ -1632,8 +1632,8 @@ def test_online_thinning_with_mala_and_rto():
     posterior = cuqi.distribution.JointDistribution(x, y)(y=y_obs)
 
     # Set up MALA and RTO samplers
-    sampler_mala_1 = cuqi.sampler.MALA(posterior, scale=0.01)
-    sampler_mala_2 = cuqi.sampler.MALA(posterior, scale=0.01)
+    sampler_mala_1 = cuqi.sampler.MALA(posterior, scale=0.0001)
+    sampler_mala_2 = cuqi.sampler.MALA(posterior, scale=0.0001)
     sampler_rto_1 = cuqi.sampler.LinearRTO(posterior, maxit=1000, tol=1e-8)
     sampler_rto_2 = cuqi.sampler.LinearRTO(posterior, maxit=1000, tol=1e-8)
 

cuqipy-1.4.0.post0.dev92/cuqi/implicitprior/__init__.py

@@ -1,5 +0,0 @@
-from ._regularizedGaussian import RegularizedGaussian, ConstrainedGaussian, NonnegativeGaussian
-from ._regularizedGMRF import RegularizedGMRF, ConstrainedGMRF, NonnegativeGMRF
-from ._regularizedUnboundedUniform import RegularizedUnboundedUniform
-from ._restorator import RestorationPrior, MoreauYoshidaPrior, TweediePrior
-