CUQIpy 1.1.1.post0.dev88__tar.gz → 1.1.1.post0.dev90__tar.gz

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  1. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/CUQIpy.egg-info/PKG-INFO +1 -1
  2. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/PKG-INFO +1 -1
  3. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/_version.py +3 -3
  4. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/_gibbs.py +6 -2
  5. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/CUQIpy.egg-info/SOURCES.txt +0 -0
  6. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/CUQIpy.egg-info/dependency_links.txt +0 -0
  7. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/CUQIpy.egg-info/requires.txt +0 -0
  8. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/CUQIpy.egg-info/top_level.txt +0 -0
  9. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/LICENSE +0 -0
  10. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/README.md +0 -0
  11. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/__init__.py +0 -0
  12. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/_messages.py +0 -0
  13. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/array/__init__.py +0 -0
  14. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/array/_array.py +0 -0
  15. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/config.py +0 -0
  16. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/data/__init__.py +0 -0
  17. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/data/_data.py +0 -0
  18. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/data/astronaut.npz +0 -0
  19. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/data/camera.npz +0 -0
  20. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/data/cat.npz +0 -0
  21. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/data/cookie.png +0 -0
  22. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/data/satellite.mat +0 -0
  23. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/density/__init__.py +0 -0
  24. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/density/_density.py +0 -0
  25. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/diagnostics.py +0 -0
  26. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/__init__.py +0 -0
  27. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_beta.py +0 -0
  28. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_cauchy.py +0 -0
  29. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_cmrf.py +0 -0
  30. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_custom.py +0 -0
  31. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_distribution.py +0 -0
  32. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_gamma.py +0 -0
  33. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_gaussian.py +0 -0
  34. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_gmrf.py +0 -0
  35. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_inverse_gamma.py +0 -0
  36. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_joint_distribution.py +0 -0
  37. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_laplace.py +0 -0
  38. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_lmrf.py +0 -0
  39. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_lognormal.py +0 -0
  40. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_modifiedhalfnormal.py +0 -0
  41. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_normal.py +0 -0
  42. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_posterior.py +0 -0
  43. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_smoothed_laplace.py +0 -0
  44. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/distribution/_uniform.py +0 -0
  45. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/__init__.py +0 -0
  46. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/__init__.py +0 -0
  47. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/_conjugate.py +0 -0
  48. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/_conjugate_approx.py +0 -0
  49. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/_cwmh.py +0 -0
  50. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/_direct.py +0 -0
  51. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/_hmc.py +0 -0
  52. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/_langevin_algorithm.py +0 -0
  53. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/_laplace_approximation.py +0 -0
  54. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/_mh.py +0 -0
  55. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/_pcn.py +0 -0
  56. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/_rto.py +0 -0
  57. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/_sampler.py +0 -0
  58. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/_utilities.py +0 -0
  59. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/geometry/__init__.py +0 -0
  60. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/geometry/_geometry.py +0 -0
  61. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/implicitprior/__init__.py +0 -0
  62. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/implicitprior/_regularizedGMRF.py +0 -0
  63. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/implicitprior/_regularizedGaussian.py +0 -0
  64. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/implicitprior/_regularizedUnboundedUniform.py +0 -0
  65. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/likelihood/__init__.py +0 -0
  66. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/likelihood/_likelihood.py +0 -0
  67. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/model/__init__.py +0 -0
  68. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/model/_model.py +0 -0
  69. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/operator/__init__.py +0 -0
  70. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/operator/_operator.py +0 -0
  71. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/pde/__init__.py +0 -0
  72. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/pde/_pde.py +0 -0
  73. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/problem/__init__.py +0 -0
  74. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/problem/_problem.py +0 -0
  75. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/sampler/__init__.py +0 -0
  76. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/sampler/_conjugate.py +0 -0
  77. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/sampler/_conjugate_approx.py +0 -0
  78. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/sampler/_cwmh.py +0 -0
  79. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/sampler/_gibbs.py +0 -0
  80. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/sampler/_hmc.py +0 -0
  81. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/sampler/_langevin_algorithm.py +0 -0
  82. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/sampler/_laplace_approximation.py +0 -0
  83. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/sampler/_mh.py +0 -0
  84. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/sampler/_pcn.py +0 -0
  85. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/sampler/_rto.py +0 -0
  86. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/sampler/_sampler.py +0 -0
  87. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/samples/__init__.py +0 -0
  88. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/samples/_samples.py +0 -0
  89. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/solver/__init__.py +0 -0
  90. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/solver/_solver.py +0 -0
  91. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/testproblem/__init__.py +0 -0
  92. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/testproblem/_testproblem.py +0 -0
  93. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/utilities/__init__.py +0 -0
  94. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/utilities/_get_python_variable_name.py +0 -0
  95. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/utilities/_utilities.py +0 -0
  96. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/pyproject.toml +0 -0
  97. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/requirements.txt +0 -0
  98. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/setup.cfg +0 -0
  99. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/setup.py +0 -0
  100. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_MRFs.py +0 -0
  101. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_abstract_distribution_density.py +0 -0
  102. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_bayesian_inversion.py +0 -0
  103. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_density.py +0 -0
  104. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_distribution.py +0 -0
  105. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_distributions_shape.py +0 -0
  106. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_geometry.py +0 -0
  107. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_implicit_priors.py +0 -0
  108. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_joint_distribution.py +0 -0
  109. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_likelihood.py +0 -0
  110. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_model.py +0 -0
  111. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_pde.py +0 -0
  112. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_posterior.py +0 -0
  113. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_problem.py +0 -0
  114. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_sampler.py +0 -0
  115. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_samples.py +0 -0
  116. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_solver.py +0 -0
  117. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_testproblem.py +0 -0
  118. {cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/tests/test_utilities.py +0 -0
{cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/CUQIpy.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
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  Name: CUQIpy
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- Version: 1.1.1.post0.dev88
3
+ Version: 1.1.1.post0.dev90
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  Summary: Computational Uncertainty Quantification for Inverse problems in Python
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  Maintainer-email: "Nicolai A. B. Riis" <nabr@dtu.dk>, "Jakob S. Jørgensen" <jakj@dtu.dk>, "Amal M. Alghamdi" <amaal@dtu.dk>, Chao Zhang <chaz@dtu.dk>
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  License: Apache License
{cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
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2
  Name: CUQIpy
3
- Version: 1.1.1.post0.dev88
3
+ Version: 1.1.1.post0.dev90
4
4
  Summary: Computational Uncertainty Quantification for Inverse problems in Python
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  Maintainer-email: "Nicolai A. B. Riis" <nabr@dtu.dk>, "Jakob S. Jørgensen" <jakj@dtu.dk>, "Amal M. Alghamdi" <amaal@dtu.dk>, Chao Zhang <chaz@dtu.dk>
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  License: Apache License
{cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/_version.py RENAMED
@@ -8,11 +8,11 @@ import json
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  version_json = '''
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  {
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- "date": "2024-09-12T22:06:24+0200",
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+ "date": "2024-09-13T08:36:06+0200",
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  "dirty": false,
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  "error": null,
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- "full-revisionid": "f2fb34068f8c84bf37b3e4049a8a77391d3c432e",
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- "version": "1.1.1.post0.dev88"
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+ "full-revisionid": "22a43b19a36622c11b96970eff2e8ab6776a7142",
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+ "version": "1.1.1.post0.dev90"
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  }
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  ''' # END VERSION_JSON
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{cuqipy-1.1.1.post0.dev88 → cuqipy-1.1.1.post0.dev90}/cuqi/experimental/mcmc/_gibbs.py RENAMED
@@ -66,7 +66,7 @@ class HybridGibbs:
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  import numpy as np
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  # Model and data
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- A, y_obs, probinfo = cuqi.testproblem.Deconvolution1D(phantom='square').get_components()
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+ A, y_obs, probinfo = cuqi.testproblem.Deconvolution1D(phantom='sinc').get_components()
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  n = A.domain_dim
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  # Define distributions
@@ -90,7 +90,11 @@ class HybridGibbs:
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  sampler = cuqi.experimental.mcmc.HybridGibbs(posterior, sampling_strategy)
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  # Run sampler
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- samples = sampler.sample(Ns=1000, Nb=200)
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+ sampler.warmup(200)
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+ sampler.sample(1000)
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+
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+ # Get samples removing burn-in
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+ samples = sampler.get_samples().burnthin(200)
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  # Plot results
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  samples['x'].plot_ci(exact=probinfo.exactSolution)