CUQIpy 1.1.1.post0.dev7__tar.gz → 1.1.1.post0.dev15__tar.gz

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  1. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/CUQIpy.egg-info/PKG-INFO +1 -1
  2. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/PKG-INFO +1 -1
  3. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/_version.py +3 -3
  4. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/geometry/_geometry.py +2 -0
  5. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_samples.py +16 -0
  6. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/CUQIpy.egg-info/SOURCES.txt +0 -0
  7. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/CUQIpy.egg-info/dependency_links.txt +0 -0
  8. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/CUQIpy.egg-info/requires.txt +0 -0
  9. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/CUQIpy.egg-info/top_level.txt +0 -0
  10. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/LICENSE +0 -0
  11. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/README.md +0 -0
  12. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/__init__.py +0 -0
  13. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/_messages.py +0 -0
  14. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/array/__init__.py +0 -0
  15. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/array/_array.py +0 -0
  16. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/config.py +0 -0
  17. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/data/__init__.py +0 -0
  18. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/data/_data.py +0 -0
  19. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/data/astronaut.npz +0 -0
  20. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/data/camera.npz +0 -0
  21. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/data/cat.npz +0 -0
  22. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/data/cookie.png +0 -0
  23. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/data/satellite.mat +0 -0
  24. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/density/__init__.py +0 -0
  25. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/density/_density.py +0 -0
  26. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/diagnostics.py +0 -0
  27. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/__init__.py +0 -0
  28. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_beta.py +0 -0
  29. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_cauchy.py +0 -0
  30. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_cmrf.py +0 -0
  31. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_custom.py +0 -0
  32. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_distribution.py +0 -0
  33. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_gamma.py +0 -0
  34. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_gaussian.py +0 -0
  35. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_gmrf.py +0 -0
  36. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_inverse_gamma.py +0 -0
  37. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_joint_distribution.py +0 -0
  38. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_laplace.py +0 -0
  39. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_lmrf.py +0 -0
  40. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_lognormal.py +0 -0
  41. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_modifiedhalfnormal.py +0 -0
  42. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_normal.py +0 -0
  43. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_posterior.py +0 -0
  44. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_smoothed_laplace.py +0 -0
  45. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/distribution/_uniform.py +0 -0
  46. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/__init__.py +0 -0
  47. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/mcmc/__init__.py +0 -0
  48. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/mcmc/_conjugate.py +0 -0
  49. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/mcmc/_conjugate_approx.py +0 -0
  50. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/mcmc/_cwmh.py +0 -0
  51. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/mcmc/_direct.py +0 -0
  52. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/mcmc/_gibbs.py +0 -0
  53. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/mcmc/_hmc.py +0 -0
  54. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/mcmc/_langevin_algorithm.py +0 -0
  55. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/mcmc/_laplace_approximation.py +0 -0
  56. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/mcmc/_mh.py +0 -0
  57. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/mcmc/_pcn.py +0 -0
  58. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/mcmc/_rto.py +0 -0
  59. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/mcmc/_sampler.py +0 -0
  60. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/experimental/mcmc/_utilities.py +0 -0
  61. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/geometry/__init__.py +0 -0
  62. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/implicitprior/__init__.py +0 -0
  63. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/implicitprior/_regularizedGMRF.py +0 -0
  64. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/implicitprior/_regularizedGaussian.py +0 -0
  65. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/implicitprior/_regularizedUnboundedUniform.py +0 -0
  66. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/likelihood/__init__.py +0 -0
  67. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/likelihood/_likelihood.py +0 -0
  68. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/model/__init__.py +0 -0
  69. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/model/_model.py +0 -0
  70. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/operator/__init__.py +0 -0
  71. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/operator/_operator.py +0 -0
  72. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/pde/__init__.py +0 -0
  73. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/pde/_pde.py +0 -0
  74. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/problem/__init__.py +0 -0
  75. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/problem/_problem.py +0 -0
  76. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/sampler/__init__.py +0 -0
  77. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/sampler/_conjugate.py +0 -0
  78. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/sampler/_conjugate_approx.py +0 -0
  79. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/sampler/_cwmh.py +0 -0
  80. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/sampler/_gibbs.py +0 -0
  81. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/sampler/_hmc.py +0 -0
  82. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/sampler/_langevin_algorithm.py +0 -0
  83. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/sampler/_laplace_approximation.py +0 -0
  84. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/sampler/_mh.py +0 -0
  85. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/sampler/_pcn.py +0 -0
  86. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/sampler/_rto.py +0 -0
  87. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/sampler/_sampler.py +0 -0
  88. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/samples/__init__.py +0 -0
  89. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/samples/_samples.py +0 -0
  90. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/solver/__init__.py +0 -0
  91. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/solver/_solver.py +0 -0
  92. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/testproblem/__init__.py +0 -0
  93. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/testproblem/_testproblem.py +0 -0
  94. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/utilities/__init__.py +0 -0
  95. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/utilities/_get_python_variable_name.py +0 -0
  96. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/cuqi/utilities/_utilities.py +0 -0
  97. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/pyproject.toml +0 -0
  98. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/requirements.txt +0 -0
  99. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/setup.cfg +0 -0
  100. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/setup.py +0 -0
  101. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_MRFs.py +0 -0
  102. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_abstract_distribution_density.py +0 -0
  103. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_bayesian_inversion.py +0 -0
  104. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_density.py +0 -0
  105. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_distribution.py +0 -0
  106. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_distributions_shape.py +0 -0
  107. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_geometry.py +0 -0
  108. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_implicit_priors.py +0 -0
  109. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_joint_distribution.py +0 -0
  110. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_likelihood.py +0 -0
  111. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_model.py +0 -0
  112. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_pde.py +0 -0
  113. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_posterior.py +0 -0
  114. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_problem.py +0 -0
  115. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_sampler.py +0 -0
  116. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_solver.py +0 -0
  117. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_testproblem.py +0 -0
  118. {cuqipy-1.1.1.post0.dev7 → cuqipy-1.1.1.post0.dev15}/tests/test_utilities.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: CUQIpy
3
- Version: 1.1.1.post0.dev7
3
+ Version: 1.1.1.post0.dev15
4
4
  Summary: Computational Uncertainty Quantification for Inverse problems in Python
5
5
  Maintainer-email: "Nicolai A. B. Riis" <nabr@dtu.dk>, "Jakob S. Jørgensen" <jakj@dtu.dk>, "Amal M. Alghamdi" <amaal@dtu.dk>, Chao Zhang <chaz@dtu.dk>
6
6
  License: Apache License
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: CUQIpy
3
- Version: 1.1.1.post0.dev7
3
+ Version: 1.1.1.post0.dev15
4
4
  Summary: Computational Uncertainty Quantification for Inverse problems in Python
5
5
  Maintainer-email: "Nicolai A. B. Riis" <nabr@dtu.dk>, "Jakob S. Jørgensen" <jakj@dtu.dk>, "Amal M. Alghamdi" <amaal@dtu.dk>, Chao Zhang <chaz@dtu.dk>
6
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  License: Apache License
@@ -8,11 +8,11 @@ import json
8
8
 
9
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  version_json = '''
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  {
11
- "date": "2024-09-03T13:01:53+0200",
11
+ "date": "2024-09-04T08:48:13+0200",
12
12
  "dirty": false,
13
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  "error": null,
14
- "full-revisionid": "6731d720ebd90ec077628febef51db45ce1738a4",
15
- "version": "1.1.1.post0.dev7"
14
+ "full-revisionid": "651202293e69ec5fa33c7da436d77d65adb562bd",
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+ "version": "1.1.1.post0.dev15"
16
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  }
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  ''' # END VERSION_JSON
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@@ -395,6 +395,8 @@ class Continuous1D(Continuous):
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  self._grid = self._create_dimension(value)
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  def _plot(self, values, *args, **kwargs):
398
+ if self.par_dim==1 and "marker" not in kwargs.keys():
399
+ kwargs["marker"] = "o"
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  p = plt.plot(self.grid, values, *args, **kwargs)
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  self._plot_config()
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  return p
@@ -54,6 +54,22 @@ def test_samples_plot(geom, to_funvals, plot_par):
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54
  with pytest.raises(ValueError,match=r"Cannot pass is_par as a plotting argument"):
55
55
  s.plot(is_par=not to_funvals,plot_par=plot_par)
56
56
 
57
+ @pytest.mark.parametrize("geom",[
58
+ (cuqi.geometry.Discrete(1)),
59
+ (cuqi.geometry.Continuous1D(1))
60
+ ])
61
+ @pytest.mark.parametrize("kwargs",[
62
+ ({}),
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+ ({"marker":"*"}),
64
+ ])
65
+ def test_1D_samples_plot(geom, kwargs):
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+ # Make basic distribution and sample
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+ my_gaussian = cuqi.distribution.Gaussian(mean=1, cov=1)
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+ samples = my_gaussian.sample(10)
69
+ samples.geometry = geom
70
+ fig1 = samples.plot(**kwargs)
71
+ fig2 = samples.plot(0, **kwargs)
72
+
57
73
  @pytest.mark.parametrize("to_funvals, plot_par", [(True,False),(True,True),(False,False),(False,True)])
58
74
  @pytest.mark.parametrize("plot_method, plot_par_supported, arviz",
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  [(Samples.plot_autocorrelation, False, True),