CMIP7-data-request-api 1.5__tar.gz → 1.5.1__tar.gz

cmip7_data_request_api-1.5.1/.github/workflows/pip_install.yml

@@ -0,0 +1,50 @@
+name: Python Package Installation Test Matrix
+
+on:
+  push:
+    branches:
+      - '*'
+  pull_request:
+    branches:
+      - '*'
+
+jobs:
+  test-install:
+    strategy:
+      matrix:
+        os: [ubuntu-22.04, macos-latest, windows-latest]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
+    
+    runs-on: ${{ matrix.os }}
+    
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v2
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r requirements.txt
+          pip install .
+        continue-on-error: false  # Allow the job to continue even if installation fails
+
+      - name: Run tests
+        run: |
+          pytest --maxfail=1 --disable-warnings -q || exit 1  # Fail this step if tests fail
+        continue-on-error: false  # Allow the job to continue even if tests fail
+
+      - name: Output result
+        run: |
+          echo "Install test completed for Python ${{ matrix.python-version }} on OS ${{ matrix.os }}."
+
+      - name: Add annotations for installation and testing failures
+        if: failure()  # This step only runs if any previous step fails
+        run: |
+          echo "Installation or test failed for Python ${{ matrix.python-version }} on OS ${{ matrix.os }}."
+          echo "::error file=install_test_report.txt,line=1::Installation or test failed for Python ${{ matrix.python-version }} on OS ${{ matrix.os }}"
+

cmip7_data_request_api-1.5.1/.github/workflows/publish2pypi.yml

@@ -0,0 +1,127 @@
+name: DREQ to PyPI and TestPyPI
+
+on:
+  push:
+    tags:
+      - "v*"
+
+jobs:
+  build:
+    name: Build distribution 📦 on ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+      fail-fast: false  # Ensures that one failure doesn't cancel other builds
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          persist-credentials: false
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.x"
+
+      - name: Install pypa/build
+        run: python -m pip install --upgrade build twine
+
+      # - name: Build a binary wheel and a source tarball
+      #   run: python -m build
+      - name: Build a binary wheel and a source tarball
+        run: |
+          echo "${{ github.ref_name }}"
+          SETUPTOOLS_SCM_PRETEND_VERSION=${{ github.ref_name }} python -m build
+        env:
+          SETUPTOOLS_SCM_PRETEND_VERSION: ${{ github.ref_name }}
+
+      - name: Store the distribution packages
+        uses: actions/upload-artifact@v4
+        with:
+          name: python-package-distributions-${{ matrix.os }}
+          path: dist/
+
+    continue-on-error: true  # Allows the workflow to continue even if one OS fails
+
+  publish-to-pypi:
+    name: Publish Python 🐍 distribution 📦 to PyPI
+    if: startsWith(github.ref, 'refs/tags/')  # Only publish on tag pushes
+    needs: build
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/CMIP7_data_request_api
+
+    permissions:
+      id-token: write  # Mandatory for trusted publishing
+
+    steps:
+      - name: Download all the dists
+        uses: actions/download-artifact@v4
+        with:
+          pattern: python-package-distributions-*  # Download all successful builds
+          merge-multiple: true
+          path: dist/
+
+      - name: Publish distribution 📦 to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+
+  github-release:
+    name: Sign the Python 🐍 distribution 📦 with Sigstore and upload to GitHub Release
+    needs: publish-to-pypi
+    runs-on: ubuntu-latest
+
+    permissions:
+      contents: write  # Mandatory for GitHub Releases
+      id-token: write  # Mandatory for sigstore
+
+    steps:
+      - name: Download all the dists
+        uses: actions/download-artifact@v4
+        with:
+          pattern: python-package-distributions-*
+          merge-multiple: true
+          path: dist/
+
+      - name: Sign the dists with Sigstore
+        uses: sigstore/gh-action-sigstore-python@v3.0.0
+        with:
+          inputs: >-
+            ./dist/*.tar.gz
+            ./dist/*.whl
+
+      - name: Create GitHub Release
+        env:
+          GITHUB_TOKEN: ${{ github.token }}
+        run: gh release create "$GITHUB_REF_NAME" --repo "$GITHUB_REPOSITORY" --notes ""
+
+      - name: Upload artifact signatures to GitHub Release
+        env:
+          GITHUB_TOKEN: ${{ github.token }}
+        run: gh release upload "$GITHUB_REF_NAME" dist/** --repo "$GITHUB_REPOSITORY"
+
+  # publish-to-testpypi:
+  #   name: Publish Python 🐍 distribution 📦 to TestPyPI
+  #   needs: build
+  #   runs-on: ubuntu-latest
+
+  #   environment:
+  #     name: testpypi
+  #     url: https://test.pypi.org/p/CMIP7_data_request_api
+
+  #   permissions:
+  #     id-token: write  # Mandatory for trusted publishing
+
+  #   steps:
+  #     - name: Download all the dists
+  #       uses: actions/download-artifact@v4
+  #       with:
+  #         pattern: python-package-distributions-*
+  #         merge-multiple: true
+  #         path: dist/
+
+  #     - name: Publish distribution 📦 to TestPyPI
+  #       uses: pypa/gh-action-pypi-publish@release/v1
+  #       with:
+  #         repository-url: https://test.pypi.org/legacy/

cmip7_data_request_api-1.5.1/.github/workflows/updates.yml

@@ -0,0 +1,47 @@
+name: Update Content
+
+on:
+  push:
+    branches:
+      - main
+      - docs_II
+
+jobs:
+  update-content:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          persist-credentials: false
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+
+      - name: Install dependencies
+        run: |
+          pip install pdoc3 autopep8 pytest
+          pip install .
+
+      - name: Pep8ify
+        run: |
+          autopep8 data_request_api --aggressive --max-line-length=240 --experimental --recursive --in-place --pep8-passes 4000 --verbose
+
+      - name: Tech documentation generation
+        run: |
+          pdoc --html data_request_api/ --output-dir docs/ --force
+
+      - name: Commit All
+        uses: WCRP-CMIP/CMIP-LD/actions/commit-all@main
+        with:
+          message: "Automated Content Update"
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Push Changes
+        run: |
+          git remote set-url origin https://x-access-token:${{ secrets.GITHUB_TOKEN }}@github.com/CMIP-Data-Request/CMIP7_DReq_Software.git
+          git push

cmip7_data_request_api-1.5.1/.gitignore

@@ -0,0 +1,184 @@
+data_request_api/data_request_api/version.py
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/latest/usage/project/#working-with-version-control
+.pdm.toml
+.pdm-python
+.pdm-build/
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+.idea/
+
+# dir used by MS dreq_content.py to store locally cached dreq content
+dreq_res
+
+# assume json files contain dreq content, which we don't want stored in this repo
+*.json
+# except for these:
+!all_var_info.json
+!requested_v1.0beta_all_opportunities.json
+!data_request_api/tests/test_datasets/*.json
+!data_request_api/query/filtering.json
+!data_request_api/content/transform.json
+# assume spreadsheets are also content of some kind, which we don't want in this repo
+*.xlsx
+*.csv
+
+cmip6-cmor-tables
+attributes.yaml
+
+*profiling*

{cmip7_data_request_api-1.5 → cmip7_data_request_api-1.5.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: CMIP7_data_request_api
-Version: 1.5
+Version: 1.5.1
 Summary: A programmatic interface to the CMIP7 Data Request
 Author: James Anstey, Gaëlle Rigoudy, Martin Schupfner, Matthew Mizielinski, Daniel Ellis, Elisabeth Dingley, Marie-Pierre Moine
 License: MIT License

cmip7_data_request_api-1.5.1/binder/environment.yml

@@ -0,0 +1,13 @@
+channels:
+  - conda-forge
+  - nodefaults
+dependencies:
+  - bs4
+  - coverage
+  - openpyxl
+  - pooch
+  - pytest
+  - pyyaml
+  - requests
+  - pip:
+    - CMIP7-data-request-api

cmip7_data_request_api-1.5.1/binder/postBuild

@@ -0,0 +1,3 @@
+set -e
+
+pip install --upgrade CMIP7-data-request-api

{cmip7_data_request_api-1.5 → cmip7_data_request_api-1.5.1}/data_request_api/CMIP7_data_request_api.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: CMIP7_data_request_api
-Version: 1.5
+Version: 1.5.1
 Summary: A programmatic interface to the CMIP7 Data Request
 Author: James Anstey, Gaëlle Rigoudy, Martin Schupfner, Matthew Mizielinski, Daniel Ellis, Elisabeth Dingley, Marie-Pierre Moine
 License: MIT License

cmip7_data_request_api-1.5.1/data_request_api/CMIP7_data_request_api.egg-info/SOURCES.txt

@@ -0,0 +1,159 @@
+.DS_Store
+.gitignore
+LICENSE
+README.md
+env.yml
+launch_test_with_coverage.sh
+pyproject.toml
+requirements.txt
+.github/.DS_Store
+.github/workflows/pip_install.yml
+.github/workflows/publish2pypi.yml
+.github/workflows/updates.yml
+binder/environment.yml
+binder/postBuild
+data_request_api/.DS_Store
+data_request_api/CMIP7_data_request_api.egg-info/PKG-INFO
+data_request_api/CMIP7_data_request_api.egg-info/SOURCES.txt
+data_request_api/CMIP7_data_request_api.egg-info/dependency_links.txt
+data_request_api/CMIP7_data_request_api.egg-info/entry_points.txt
+data_request_api/CMIP7_data_request_api.egg-info/requires.txt
+data_request_api/CMIP7_data_request_api.egg-info/scm_file_list.json
+data_request_api/CMIP7_data_request_api.egg-info/top_level.txt
+data_request_api/data_request_api/__init__.py
+data_request_api/data_request_api/version.py
+data_request_api/data_request_api/command_line/__init__.py
+data_request_api/data_request_api/command_line/compare_variables.py
+data_request_api/data_request_api/command_line/config.py
+data_request_api/data_request_api/command_line/estimate_dreq_volume.py
+data_request_api/data_request_api/command_line/export_dreq_lists_json.py
+data_request_api/data_request_api/command_line/get_variables_metadata.py
+data_request_api/data_request_api/content/README.MD
+data_request_api/data_request_api/content/__init__.py
+data_request_api/data_request_api/content/consolidate_export.py
+data_request_api/data_request_api/content/dreq_content.py
+data_request_api/data_request_api/content/dump_transformation.py
+data_request_api/data_request_api/content/mapping_table.py
+data_request_api/data_request_api/content/transform.json
+data_request_api/data_request_api/content/utils.py
+data_request_api/data_request_api/query/__init__.py
+data_request_api/data_request_api/query/data_request.py
+data_request_api/data_request_api/query/dreq_classes.py
+data_request_api/data_request_api/query/dreq_query.py
+data_request_api/data_request_api/query/filtering.json
+data_request_api/data_request_api/query/vocabulary_server.py
+data_request_api/data_request_api/tests/__init__.py
+data_request_api/data_request_api/tests/test_cli.py
+data_request_api/data_request_api/tests/test_config.py
+data_request_api/data_request_api/tests/test_config_cli.py
+data_request_api/data_request_api/tests/test_consolidation.py
+data_request_api/data_request_api/tests/test_data_request.py
+data_request_api/data_request_api/tests/test_decorator.py
+data_request_api/data_request_api/tests/test_dreq_content.py
+data_request_api/data_request_api/tests/test_dreq_query.py
+data_request_api/data_request_api/tests/test_dump_transformation.py
+data_request_api/data_request_api/tests/test_optimize.py
+data_request_api/data_request_api/tests/test_vocabulary_server.py
+data_request_api/data_request_api/tests/test_datasets/DR_raw_not-consolidate_content.json
+data_request_api/data_request_api/tests/test_datasets/DR_release_not-consolidate_content.json
+data_request_api/data_request_api/tests/test_datasets/DR_release_not-consolidate_content_dump.txt
+data_request_api/data_request_api/tests/test_datasets/VS_raw_not-consolidate_content.json
+data_request_api/data_request_api/tests/test_datasets/VS_release_not-consolidate_content.json
+data_request_api/data_request_api/tests/test_datasets/dreq_raw_export.json
+data_request_api/data_request_api/tests/test_datasets/dreq_release_export.json
+data_request_api/data_request_api/tests/test_datasets/raw_not-consolidate_output_format.json
+data_request_api/data_request_api/tests/test_datasets/raw_not-consolidate_output_transform.json
+data_request_api/data_request_api/tests/test_datasets/release_not-consolidate_output_format.json
+data_request_api/data_request_api/tests/test_datasets/release_not-consolidate_output_transform.json
+data_request_api/data_request_api/utilities/__init__.py
+data_request_api/data_request_api/utilities/config.py
+data_request_api/data_request_api/utilities/decorators.py
+data_request_api/data_request_api/utilities/logger.py
+data_request_api/data_request_api/utilities/parser.py
+data_request_api/data_request_api/utilities/tools.py
+docs/data_request_api/index.html
+docs/data_request_api/version.html
+docs/data_request_api/command_line/compare_variables.html
+docs/data_request_api/command_line/config.html
+docs/data_request_api/command_line/estimate_dreq_volume.html
+docs/data_request_api/command_line/export_dreq_lists_json.html
+docs/data_request_api/command_line/get_variables_metadata.html
+docs/data_request_api/command_line/index.html
+docs/data_request_api/content/consolidate_export.html
+docs/data_request_api/content/dreq_content.html
+docs/data_request_api/content/dump_transformation.html
+docs/data_request_api/content/index.html
+docs/data_request_api/content/mapping_table.html
+docs/data_request_api/content/utils.html
+docs/data_request_api/query/data_request.html
+docs/data_request_api/query/dreq_classes.html
+docs/data_request_api/query/dreq_query.html
+docs/data_request_api/query/index.html
+docs/data_request_api/query/vocabulary_server.html
+docs/data_request_api/stable/index.html
+docs/data_request_api/stable/content/consolidate_export.html
+docs/data_request_api/stable/content/dreq_content.html
+docs/data_request_api/stable/content/dump_transformation.html
+docs/data_request_api/stable/content/index.html
+docs/data_request_api/stable/content/mapping_table.html
+docs/data_request_api/stable/query/data_request.html
+docs/data_request_api/stable/query/dreq_classes.html
+docs/data_request_api/stable/query/dreq_query.html
+docs/data_request_api/stable/query/index.html
+docs/data_request_api/stable/query/vocabulary_server.html
+docs/data_request_api/stable/utilities/config.html
+docs/data_request_api/stable/utilities/decorators.html
+docs/data_request_api/stable/utilities/index.html
+docs/data_request_api/stable/utilities/logger.html
+docs/data_request_api/stable/utilities/parser.html
+docs/data_request_api/stable/utilities/tools.html
+docs/data_request_api/tests/index.html
+docs/data_request_api/tests/test_cli.html
+docs/data_request_api/tests/test_config.html
+docs/data_request_api/tests/test_config_cli.html
+docs/data_request_api/tests/test_consolidation.html
+docs/data_request_api/tests/test_data_request.html
+docs/data_request_api/tests/test_decorator.html
+docs/data_request_api/tests/test_dreq_content.html
+docs/data_request_api/tests/test_dreq_query.html
+docs/data_request_api/tests/test_dump_transformation.html
+docs/data_request_api/tests/test_optimize.html
+docs/data_request_api/tests/test_vocabulary_server.html
+docs/data_request_api/utilities/config.html
+docs/data_request_api/utilities/decorators.html
+docs/data_request_api/utilities/index.html
+docs/data_request_api/utilities/logger.html
+docs/data_request_api/utilities/parser.html
+docs/data_request_api/utilities/tools.html
+docs/static/3boxes_schema.png
+notebooks/HowTo-00_Install_the_DR_Software.ipynb
+notebooks/HowTo-01_Import_and_Load_the_DR.ipynb
+notebooks/HowTo-02_Discover_What_is_in_DR.ipynb
+notebooks/HowTo-03a_Find_Experiments_and_Variables_for_given_Opportunities.ipynb
+notebooks/HowTo-03b_Find_Experiments_and_Variables_for_given_Opportunities.ipynb
+notebooks/HowTo-04a_View_Attributes_of_Experiments_and_Variables.ipynb
+notebooks/HowTo-04b_View_Attributes_of_Variables.ipynb
+notebooks/HowTo-05_Apply_Various_Search_Critria.ipynb
+notebooks/README.md
+notebooks/outdir/.gitkeep
+scripts/check_consolidation.py
+scripts/check_consolidation2.py
+scripts/check_consolidation2_list-all-diffs.py
+scripts/check_consolidation_and_transformation.py
+scripts/check_expected_data.py
+scripts/check_variables_attributes.py
+scripts/database_transformation.py
+scripts/tidy_config.json
+scripts/tidy_test_base_content.py
+scripts/validate_DR_terms.py
+scripts/workflow_example.py
+scripts/workflow_example_2.py
+scripts/branding/README.md
+scripts/branding/branded_variable_attributes.yaml
+scripts/branding/compare_branded_variables.py
+scripts/branding/generate_branded_names.py
+scripts/examples/requested_v1.2.2.5_cmip6names.json
+scripts/examples/requested_v1.2.2.5_cmip7names.json
+scripts/examples/variables_v1.2.2.5_cmip6names.json
+scripts/examples/variables_v1.2.2.5_cmip7names.json
+scripts/sandbox/create_brand_name.py