Braindecode 1.8.1.dev181512403__tar.gz → 1.8.1.dev181543327__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/NOTICE.txt +0 -1
- {braindecode-1.8.1.dev181512403/braindecode.egg-info → braindecode-1.8.1.dev181543327}/PKG-INFO +1 -1
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/augmentation/functional.py +2 -6
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/base.py +8 -164
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/tuh.py +13 -20
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datautil/serialization.py +6 -10
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/functional/__init__.py +0 -4
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/functional/_real_dft.py +0 -55
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/functional/functions.py +4 -108
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/__init__.py +0 -2
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/attn_sleep.py +11 -9
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/axon.py +8 -15
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/barista.py +2 -2
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/base.py +15 -34
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/biot.py +2 -7
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/brainomni.py +4 -14
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/brant.py +4 -5
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/codebrain.py +7 -45
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/contrawr.py +1 -23
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/csbrain.py +37 -74
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/deep4.py +1 -10
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/dgcnn.py +0 -7
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/diver1.py +59 -51
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/eegconformer.py +2 -5
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/eeginception_mi.py +97 -32
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/eegnex.py +1 -16
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/eegpt.py +1 -3
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/eegsym.py +1 -17
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/labram.py +15 -34
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/luna.py +14 -14
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/mapa.py +73 -116
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/medformer.py +20 -28
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/meta_neuromotor.py +32 -57
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/msvtnet.py +6 -8
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/mvpformer.py +56 -46
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/neurorvq.py +3 -17
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/neurorvq_tokenizer.py +53 -57
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/patchedtransformer.py +8 -3
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/reve.py +5 -29
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/signal_jepa.py +1 -6
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/sleep_stager_blanco_2020.py +6 -13
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/summary.csv +0 -1
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/tcn.py +0 -5
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/tidnet.py +1 -18
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/usleep.py +2 -3
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/util.py +33 -139
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/zuna.py +9 -17
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/modules/attention.py +6 -53
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/modules/dance_modules.py +10 -22
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/modules/filter.py +44 -79
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/modules/layers.py +2 -41
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/modules/quantization.py +8 -12
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/preprocessing/preprocess.py +0 -11
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/preprocessing/windowers.py +4 -5
- braindecode-1.8.1.dev181543327/braindecode/version.py +1 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327/braindecode.egg-info}/PKG-INFO +1 -1
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode.egg-info/SOURCES.txt +0 -1
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/docs/api.rst +0 -5
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/docs/user_guide/channel_strategies.rst +1 -1
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/docs/whats_new.rst +0 -93
- braindecode-1.8.1.dev181512403/braindecode/models/guetschel2026.py +0 -775
- braindecode-1.8.1.dev181512403/braindecode/version.py +0 -1
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/LICENSE.txt +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/MANIFEST.in +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/README.rst +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/__init__.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/augmentation/__init__.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/augmentation/base.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/augmentation/transforms.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/classifier.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/__init__.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/_notebook_viewer.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/bbci.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/bcicomp.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/bids/__init__.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/bids/datasets.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/bids/format.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/bids/hub.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/bids/hub_format.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/bids/hub_io.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/bids/hub_validation.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/bids/iterable.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/chb_mit.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/collate.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/mne.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/moabb.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/nmt.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/registry.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/siena.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/sleep_physio_challe_18.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/sleep_physionet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/utils.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/xy.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datautil/__init__.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datautil/channel_utils.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datautil/hub_formats.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datautil/util.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/eegneuralnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/functional/initialization.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/atcnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/attentionbasenet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/bendr.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/brainbert.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/brainmodule.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/cbramod.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/config.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/ctnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/dance.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/deepsleepnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/eeg_clip.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/eegdino.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/eeginception_erp.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/eegitnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/eegminer.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/eegnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/eegsimpleconv.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/eegtcnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/emg2qwerty.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/fbcnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/fblightconvnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/fbmsnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/hybrid.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/ifnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/mirepnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/mscformer.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/neuropose.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/popt.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/sccnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/seizure_transformer.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/sensingdynamics.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/shallow_fbcsp.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/sinc_shallow.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/sleep_stager_chambon_2018.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/sleepfm.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/sparcnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/sstdpn.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/steegformer.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/syncnet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/tcformer.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/tfm_tokenizer.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/tmsanet.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/tsinception.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/models/vemg2pose.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/modules/__init__.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/modules/activation.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/modules/blocks.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/modules/channels.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/modules/convolution.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/modules/linear.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/modules/linear_attention.py +0 -0
- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/modules/parametrization.py +0 -0
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- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/regressor.py +0 -0
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- {braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/training/callbacks.py +0 -0
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The `brainomni.py` file is a derivative of `OpenTSLab/BrainOmni` (MIT), whose
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Metadata-Version: 2.4
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Name: braindecode
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Version: 1.8.1.
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Version: 1.8.1.dev181543327
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Summary: Deep learning software to decode EEG, ECG or MEG signals
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Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Alexandre Gramfort <agramfort@meta.com>
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Maintainer-email: Alexandre Gramfort <agramfort@meta.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Robin Tibor Schirrmeister <robintibor@gmail.com>
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# Gustavo Rodrigues <gustavenrique01@gmail.com>
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# Anton Soloviev <anton@praviel.com>
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#
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)
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OS all at once (``posix_fadvise(POSIX_FADV_WILLNEED)``, where it
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exists), so their reads from disk overlap instead of running one after
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another: on a network file system a batch read from cold files then
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costs about one round trip, not one per window.
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"""
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@@ -1824,8 +1672,7 @@ class BaseConcatDataset(ConcatDataset, HubDatasetMixin, Generic[T]):
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@@ -1895,10 +1742,7 @@ class BaseConcatDataset(ConcatDataset, HubDatasetMixin, Generic[T]):
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# Create path if it doesn't exist
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-
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# saves each recording at its index), so the other entries are expected:
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# skip the scan that would stat them all on every call and list them in a warning.
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|
|
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|
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1747
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[e for e in path_contents if os.path.isdir(os.path.join(path, e))]
|
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)
|
{braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/datasets/tuh.py
RENAMED
|
@@ -11,12 +11,10 @@ TUH Abnormal EEG Corpus.
|
|
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from __future__ import annotations
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import glob
|
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import json
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|
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|
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|
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|
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from functools import cache
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from pathlib import Path
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from unittest import mock
|
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@@ -185,8 +183,11 @@ class TUH(BaseConcatDataset):
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}
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raw.rename_channels(mapping_strip)
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+
montage1005 = mne.channels.make_standard_montage(
|
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resolve_montage_name("standard_1005")
|
|
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+
)
|
|
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189
|
mapping_eeg_names = {
|
|
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|
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c.upper(): c for c in
|
|
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+
c.upper(): c for c in montage1005.ch_names if c.upper() in raw.ch_names
|
|
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191
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}
|
|
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|
|
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# Set channels whose type could not be inferred (defaulted to "eeg") to "misc":
|
|
@@ -209,7 +210,10 @@ class TUH(BaseConcatDataset):
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@staticmethod
|
|
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def _set_montage(raw):
|
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|
|
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|
+
montage = mne.channels.make_standard_montage(
|
|
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|
+
resolve_montage_name("standard_1005")
|
|
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|
+
)
|
|
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|
+
raw.set_montage(montage, on_missing="ignore")
|
|
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|
|
|
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218
|
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|
|
215
219
|
def _create_dataset(
|
|
@@ -241,11 +245,7 @@ class TUH(BaseConcatDataset):
|
|
|
241
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|
# file paths, use this instead as before
|
|
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|
if "year" in description:
|
|
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meas_date = meas_date.replace(*description[["year", "month", "day"]])
|
|
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|
|
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|
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# 2038-01-19 only: undated recordings (year 1 above) and de-identified ones
|
|
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|
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# (TUAB has 1899-12-30) keep their date in the description only.
|
|
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|
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in_fif_range = -(2**31) <= meas_date.timestamp() < 2**31
|
|
248
|
-
raw.set_meas_date(meas_date if in_fif_range else None)
|
|
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|
+
raw.set_meas_date(meas_date)
|
|
249
249
|
|
|
250
250
|
d = {
|
|
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251
|
"age": int(age),
|
|
@@ -255,9 +255,9 @@ class TUH(BaseConcatDataset):
|
|
|
255
255
|
# if not, get it from meas_date in raw.info and add to description
|
|
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256
|
# if meas_date is None, create fake one
|
|
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257
|
if "year" not in description:
|
|
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|
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d["year"] = meas_date.year
|
|
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|
-
d["month"] = meas_date.month
|
|
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|
-
d["day"] = meas_date.day
|
|
258
|
+
d["year"] = raw.info["meas_date"].year
|
|
259
|
+
d["month"] = raw.info["meas_date"].month
|
|
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|
+
d["day"] = raw.info["meas_date"].day
|
|
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261
|
|
|
262
262
|
# read info relevant for preprocessing from raw without loading it
|
|
263
263
|
if add_physician_reports:
|
|
@@ -269,12 +269,6 @@ class TUH(BaseConcatDataset):
|
|
|
269
269
|
return base_dataset
|
|
270
270
|
|
|
271
271
|
|
|
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|
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@cache
|
|
273
|
-
def _standard_1005():
|
|
274
|
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# Built once per process: set_montage copies the montage before using it.
|
|
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|
-
return mne.channels.make_standard_montage(resolve_montage_name("standard_1005"))
|
|
276
|
-
|
|
277
|
-
|
|
278
272
|
def _create_description(file_paths, version, ds_name):
|
|
279
273
|
descriptions = [
|
|
280
274
|
_parse_description_from_file_path(f, version, ds_name) for f in file_paths
|
|
@@ -295,8 +289,7 @@ def _read_date(file_path):
|
|
|
295
289
|
date_path = file_path.replace(".edf", "_date.txt")
|
|
296
290
|
# if date file exists, read it
|
|
297
291
|
if os.path.exists(date_path):
|
|
298
|
-
|
|
299
|
-
description = json.load(f)
|
|
292
|
+
description = pd.read_json(date_path, typ="series").to_dict()
|
|
300
293
|
# otherwise read edf file, extract date and store to file
|
|
301
294
|
else:
|
|
302
295
|
raw = mne.io.read_raw_edf(file_path, preload=False, verbose="error")
|
|
@@ -21,7 +21,6 @@ from ..datasets.base import (
|
|
|
21
21
|
EEGWindowsDataset,
|
|
22
22
|
RawDataset,
|
|
23
23
|
WindowsDataset,
|
|
24
|
-
_compact_fif_tags,
|
|
25
24
|
)
|
|
26
25
|
|
|
27
26
|
|
|
@@ -80,8 +79,7 @@ def _outdated_load_concat_dataset(path, preload, ids_to_load=None, target_name=N
|
|
|
80
79
|
for path in paths:
|
|
81
80
|
if is_raw and target_name is None:
|
|
82
81
|
target_file_name = path / "target_name.json"
|
|
83
|
-
|
|
84
|
-
target_name = json.load(f)["target_name"]
|
|
82
|
+
target_name = json.load(open(target_file_name, "r"))["target_name"]
|
|
85
83
|
|
|
86
84
|
all_signals, description = _load_signals_and_description(
|
|
87
85
|
path=path, preload=preload, is_raw=is_raw, ids_to_load=ids_to_load
|
|
@@ -143,7 +141,7 @@ def _load_signals(fif_file, preload, is_raw):
|
|
|
143
141
|
if all(Path(f).exists() for f in signals.filenames):
|
|
144
142
|
if preload:
|
|
145
143
|
signals.load_data()
|
|
146
|
-
return
|
|
144
|
+
return signals
|
|
147
145
|
else: # This may happen if the file has been moved together with the pickle file.
|
|
148
146
|
warnings.warn(
|
|
149
147
|
f"Pickle file {pkl_file} exists, but the referenced fif "
|
|
@@ -173,8 +171,7 @@ def _load_signals(fif_file, preload, is_raw):
|
|
|
173
171
|
if preload:
|
|
174
172
|
signals._data, signals.preload = data, True
|
|
175
173
|
|
|
176
|
-
|
|
177
|
-
return _compact_fif_tags(signals)
|
|
174
|
+
return signals
|
|
178
175
|
|
|
179
176
|
|
|
180
177
|
def load_concat_dataset(path, preload, ids_to_load=None, target_name=None, n_jobs=1):
|
|
@@ -267,8 +264,7 @@ def _load_parallel(path, i, preload, is_raw, has_stored_windows):
|
|
|
267
264
|
target_file_path = sub_dir / "target_name.json"
|
|
268
265
|
target_name = None
|
|
269
266
|
if target_file_path.exists():
|
|
270
|
-
|
|
271
|
-
target_name = json.load(f)["target_name"]
|
|
267
|
+
target_name = json.load(open(target_file_path, "r"))["target_name"]
|
|
272
268
|
|
|
273
269
|
if is_raw and (not has_stored_windows):
|
|
274
270
|
dataset = RawDataset(signals, description, target_name)
|
|
@@ -308,8 +304,8 @@ def _load_kwargs_json(kwargs_name, sub_dir):
|
|
|
308
304
|
kwargs_file_name = ".".join([kwargs_name, "json"])
|
|
309
305
|
kwargs_file_path = os.path.join(sub_dir, kwargs_file_name)
|
|
310
306
|
if os.path.exists(kwargs_file_path):
|
|
311
|
-
|
|
312
|
-
|
|
307
|
+
kwargs = json.load(open(kwargs_file_path, "r"))
|
|
308
|
+
return kwargs
|
|
313
309
|
|
|
314
310
|
|
|
315
311
|
def _is_outdated_saved(path):
|
{braindecode-1.8.1.dev181512403 → braindecode-1.8.1.dev181543327}/braindecode/functional/__init__.py
RENAMED
|
@@ -3,13 +3,11 @@ from .functions import (
|
|
|
3
3
|
daubechies_filters,
|
|
4
4
|
drop_path,
|
|
5
5
|
dwt_max_level,
|
|
6
|
-
fft_conv1d,
|
|
7
6
|
hilbert_freq,
|
|
8
7
|
identity,
|
|
9
8
|
iou_1d,
|
|
10
9
|
pairwise_iou_1d,
|
|
11
10
|
plv_time,
|
|
12
|
-
prefer_fft_conv,
|
|
13
11
|
rotate_pairs,
|
|
14
12
|
safe_log,
|
|
15
13
|
sinusoidal_positional_encoding,
|
|
@@ -24,13 +22,11 @@ __all__ = [
|
|
|
24
22
|
"daubechies_filters",
|
|
25
23
|
"drop_path",
|
|
26
24
|
"dwt_max_level",
|
|
27
|
-
"fft_conv1d",
|
|
28
25
|
"hilbert_freq",
|
|
29
26
|
"identity",
|
|
30
27
|
"iou_1d",
|
|
31
28
|
"pairwise_iou_1d",
|
|
32
29
|
"plv_time",
|
|
33
|
-
"prefer_fft_conv",
|
|
34
30
|
"rotate_pairs",
|
|
35
31
|
"safe_log",
|
|
36
32
|
"sinusoidal_positional_encoding",
|
|
@@ -12,10 +12,8 @@ never downcast, so callers wrap the numerically sensitive parts with
|
|
|
12
12
|
#
|
|
13
13
|
# License: BSD (3-clause)
|
|
14
14
|
import functools
|
|
15
|
-
from typing import Optional
|
|
16
15
|
|
|
17
16
|
import torch
|
|
18
|
-
from torch import nn
|
|
19
17
|
|
|
20
18
|
|
|
21
19
|
def needs_real_dft(x: torch.Tensor) -> bool:
|
|
@@ -138,56 +136,3 @@ def hilbert_freq_real(x: torch.Tensor, forward_fourier: bool) -> torch.Tensor:
|
|
|
138
136
|
return torch.stack((out_real, out_imag), dim=-1)
|
|
139
137
|
|
|
140
138
|
return compute(x)
|
|
141
|
-
|
|
142
|
-
|
|
143
|
-
@torch.jit.unused
|
|
144
|
-
def fft_conv1d_real(
|
|
145
|
-
x: torch.Tensor, weight: torch.Tensor, bias: Optional[torch.Tensor]
|
|
146
|
-
) -> torch.Tensor:
|
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def prefer_fft_conv(x: torch.Tensor, kernel_size: int) -> bool:
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"""Whether :func:`fft_conv1d` is expected to beat a direct convolution.
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Rule measured for :class:`~braindecode.models.EEGInceptionMI` (48 to 240
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channels, 128-500 Hz, 2 CPU threads, oneDNN on and off): on CPU the FFT
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float32 direct convolution stays cheaper up to k = 85 / 31 (13 long
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temporal convolutions of the model zoo, 22 channels x batch 32). On Intel
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Gaudi (HPU) a direct convolution costs about ``batch_size * n_times *
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kernel_size`` and the FFT about a fixed few milliseconds in eager mode: the
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----------
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Input of the convolution, ``(batch, in_channels, n_times)``.
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Kernel length in samples.
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# Normalize the analytic signal to obtain unit vectors (phasors).
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unit_phasor = analytic_signal / amplitude.unsqueeze(-1)
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# The real/imaginary slices are strided (step 2): matmul copied each of
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# them for every product, per batch matrix. Copy them once.
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real = unit_phasor[..., 0].contiguous()
|
|
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|
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imag = unit_phasor[..., 1].contiguous()
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|
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real_t = real.transpose(-2, -1).contiguous()
|
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imag_t = imag.transpose(-2, -1).contiguous()
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# different channels.
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real_real = torch.matmul(
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# Compute the imaginary part of the outer product between phasors of
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imag_imag = torch.matmul(
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imag_imag = torch.matmul(unit_phasor[..., 1], unit_phasor[..., 1].transpose(-2, -1))
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# Compute the cross-terms for the real and imaginary parts.
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|
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real_imag = torch.matmul(
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imag_real = torch.matmul(
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real_imag = torch.matmul(unit_phasor[..., 0], unit_phasor[..., 1].transpose(-2, -1))
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imag_real = torch.matmul(unit_phasor[..., 1], unit_phasor[..., 0].transpose(-2, -1))
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297
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# Combine the real and imaginary parts to form the complex correlation.
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298
|
correlation_real = real_real + imag_imag
|