Braindecode 1.8.1.dev172419947__tar.gz → 1.8.1.dev172484635__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (210) hide show
  1. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/NOTICE.txt +2 -20
  2. {braindecode-1.8.1.dev172419947/braindecode.egg-info → braindecode-1.8.1.dev172484635}/PKG-INFO +1 -1
  3. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/augmentation/__init__.py +0 -2
  4. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/augmentation/functional.py +2 -6
  5. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/augmentation/transforms.py +0 -185
  6. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/classifier.py +5 -6
  7. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/base.py +8 -164
  8. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/tuh.py +13 -20
  9. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datautil/serialization.py +6 -10
  10. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/eegneuralnet.py +1 -1
  11. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/functional/__init__.py +0 -6
  12. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/functional/_real_dft.py +0 -55
  13. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/functional/functions.py +16 -163
  14. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/__init__.py +14 -31
  15. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/attn_sleep.py +15 -9
  16. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/barista.py +2 -6
  17. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/base.py +20 -136
  18. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/bendr.py +63 -73
  19. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/biot.py +70 -57
  20. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/brainbert.py +11 -10
  21. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/brainmodule.py +11 -6
  22. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/brant.py +14 -17
  23. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/cbramod.py +26 -64
  24. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/codebrain.py +78 -121
  25. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/config.py +2 -1
  26. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/contrawr.py +4 -26
  27. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/dance.py +1 -1
  28. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/deep4.py +13 -37
  29. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/dgcnn.py +1 -10
  30. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/diver1.py +60 -55
  31. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/eegconformer.py +2 -5
  32. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/eegdino.py +16 -32
  33. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/eeginception_mi.py +17 -48
  34. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/eegnex.py +1 -16
  35. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/eegpt.py +104 -69
  36. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/eegsym.py +8 -34
  37. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/emg2qwerty.py +2 -19
  38. braindecode-1.8.1.dev172484635/braindecode/models/interpolated.py +185 -0
  39. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/labram.py +222 -294
  40. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/luna.py +41 -82
  41. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/medformer.py +20 -28
  42. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/meta_neuromotor.py +55 -102
  43. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/mirepnet.py +2 -23
  44. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/msvtnet.py +8 -12
  45. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/mvpformer.py +192 -178
  46. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/patchedtransformer.py +8 -3
  47. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/popt.py +0 -4
  48. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/reve.py +58 -75
  49. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/sensingdynamics.py +5 -10
  50. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/shallow_fbcsp.py +8 -15
  51. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/signal_jepa.py +36 -72
  52. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/sleep_stager_blanco_2020.py +6 -13
  53. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/sstdpn.py +10 -13
  54. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/steegformer.py +4 -10
  55. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/summary.csv +5 -14
  56. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/syncnet.py +2 -2
  57. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/tcformer.py +52 -30
  58. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/tcn.py +0 -5
  59. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/tidnet.py +1 -18
  60. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/usleep.py +2 -3
  61. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/util.py +85 -315
  62. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/zuna.py +14 -30
  63. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/modules/__init__.py +2 -6
  64. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/modules/attention.py +10 -49
  65. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/modules/blocks.py +5 -18
  66. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/modules/convolution.py +9 -10
  67. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/modules/dance_modules.py +27 -48
  68. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/modules/filter.py +66 -93
  69. braindecode-1.8.1.dev172484635/braindecode/modules/interpolation.py +201 -0
  70. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/modules/layers.py +25 -57
  71. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/modules/parametrization.py +0 -29
  72. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/modules/stats.py +1 -6
  73. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/preprocessing/preprocess.py +0 -11
  74. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/preprocessing/windowers.py +4 -5
  75. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/regressor.py +5 -6
  76. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/training/scoring.py +5 -6
  77. braindecode-1.8.1.dev172484635/braindecode/version.py +1 -0
  78. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/visualization/topology.py +1 -1
  79. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635/braindecode.egg-info}/PKG-INFO +1 -1
  80. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode.egg-info/SOURCES.txt +3 -17
  81. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/api.rst +7 -46
  82. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/index.rst +0 -1
  83. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/models/models_categorization.rst +3 -10
  84. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/whats_new.rst +1 -410
  85. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/pyproject.toml +0 -3
  86. braindecode-1.8.1.dev172419947/braindecode/models/axon.py +0 -523
  87. braindecode-1.8.1.dev172419947/braindecode/models/brainomni.py +0 -962
  88. braindecode-1.8.1.dev172419947/braindecode/models/csbrain.py +0 -767
  89. braindecode-1.8.1.dev172419947/braindecode/models/eeg_clip.py +0 -307
  90. braindecode-1.8.1.dev172419947/braindecode/models/guetschel2026.py +0 -775
  91. braindecode-1.8.1.dev172419947/braindecode/models/mapa.py +0 -905
  92. braindecode-1.8.1.dev172419947/braindecode/models/neurorvq.py +0 -625
  93. braindecode-1.8.1.dev172419947/braindecode/models/neurorvq_tokenizer.py +0 -627
  94. braindecode-1.8.1.dev172419947/braindecode/models/seizure_transformer.py +0 -407
  95. braindecode-1.8.1.dev172419947/braindecode/models/sleepfm.py +0 -776
  96. braindecode-1.8.1.dev172419947/braindecode/models/tfm_tokenizer.py +0 -409
  97. braindecode-1.8.1.dev172419947/braindecode/models/tmsanet.py +0 -233
  98. braindecode-1.8.1.dev172419947/braindecode/modules/channels.py +0 -459
  99. braindecode-1.8.1.dev172419947/braindecode/modules/linear_attention.py +0 -128
  100. braindecode-1.8.1.dev172419947/braindecode/modules/quantization.py +0 -422
  101. braindecode-1.8.1.dev172419947/braindecode/version.py +0 -1
  102. braindecode-1.8.1.dev172419947/docs/user_guide/channel_strategies.rst +0 -59
  103. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/LICENSE.txt +0 -0
  104. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/MANIFEST.in +0 -0
  105. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/README.rst +0 -0
  106. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/__init__.py +0 -0
  107. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/augmentation/base.py +0 -0
  108. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/__init__.py +0 -0
  109. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/_notebook_viewer.py +0 -0
  110. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/bbci.py +0 -0
  111. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/bcicomp.py +0 -0
  112. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/bids/__init__.py +0 -0
  113. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/bids/datasets.py +0 -0
  114. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/bids/format.py +0 -0
  115. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/bids/hub.py +0 -0
  116. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/bids/hub_format.py +0 -0
  117. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/bids/hub_io.py +0 -0
  118. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/bids/hub_validation.py +0 -0
  119. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/bids/iterable.py +0 -0
  120. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/chb_mit.py +0 -0
  121. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/collate.py +0 -0
  122. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/mne.py +0 -0
  123. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/moabb.py +0 -0
  124. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/nmt.py +0 -0
  125. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/registry.py +0 -0
  126. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/siena.py +0 -0
  127. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/sleep_physio_challe_18.py +0 -0
  128. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/sleep_physionet.py +0 -0
  129. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/utils.py +0 -0
  130. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datasets/xy.py +0 -0
  131. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datautil/__init__.py +0 -0
  132. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datautil/channel_utils.py +0 -0
  133. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datautil/hub_formats.py +0 -0
  134. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/datautil/util.py +0 -0
  135. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/functional/initialization.py +0 -0
  136. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/atcnet.py +0 -0
  137. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/attentionbasenet.py +0 -0
  138. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/ctnet.py +0 -0
  139. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/deepsleepnet.py +0 -0
  140. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/eeginception_erp.py +0 -0
  141. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/eegitnet.py +0 -0
  142. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/eegminer.py +0 -0
  143. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/eegnet.py +0 -0
  144. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/eegsimpleconv.py +0 -0
  145. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/eegtcnet.py +0 -0
  146. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/fbcnet.py +0 -0
  147. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/fblightconvnet.py +0 -0
  148. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/fbmsnet.py +0 -0
  149. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/hybrid.py +0 -0
  150. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/ifnet.py +0 -0
  151. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/mscformer.py +0 -0
  152. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/neuropose.py +0 -0
  153. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/sccnet.py +0 -0
  154. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/sinc_shallow.py +0 -0
  155. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/sleep_stager_chambon_2018.py +0 -0
  156. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/sparcnet.py +0 -0
  157. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/tsinception.py +0 -0
  158. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/models/vemg2pose.py +0 -0
  159. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/modules/activation.py +0 -0
  160. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/modules/linear.py +0 -0
  161. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/modules/popt_modules.py +0 -0
  162. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/modules/util.py +0 -0
  163. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/modules/wrapper.py +0 -0
  164. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/preprocessing/__init__.py +0 -0
  165. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/preprocessing/eegprep_preprocess.py +0 -0
  166. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/preprocessing/mne_preprocess.py +0 -0
  167. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/preprocessing/util.py +0 -0
  168. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/samplers/__init__.py +0 -0
  169. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/samplers/base.py +0 -0
  170. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/samplers/ssl.py +0 -0
  171. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/training/__init__.py +0 -0
  172. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/training/callbacks.py +0 -0
  173. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/training/losses.py +0 -0
  174. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/util.py +0 -0
  175. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/visualization/__init__.py +0 -0
  176. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/visualization/activations.py +0 -0
  177. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/visualization/attribution.py +0 -0
  178. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/visualization/confusion_matrices.py +0 -0
  179. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/visualization/frequency.py +0 -0
  180. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/visualization/metrics.py +0 -0
  181. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode/visualization/sanity.py +0 -0
  182. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode.egg-info/dependency_links.txt +0 -0
  183. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode.egg-info/requires.txt +0 -0
  184. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/braindecode.egg-info/top_level.txt +0 -0
  185. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/Makefile +0 -0
  186. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/_templates/autosummary/class.rst +0 -0
  187. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/_templates/autosummary/class_in_subdir.rst +0 -0
  188. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/_templates/autosummary/function.rst +0 -0
  189. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/_templates/autosummary/function_in_subdir.rst +0 -0
  190. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/agent_docs.rst +0 -0
  191. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/cite.rst +0 -0
  192. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/conf.py +0 -0
  193. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/help.rst +0 -0
  194. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/install/install.rst +0 -0
  195. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/install/install_pip.rst +0 -0
  196. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/install/install_source.rst +0 -0
  197. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/models/categorization/attention.rst +0 -0
  198. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/models/categorization/channel.rst +0 -0
  199. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/models/categorization/convolution.rst +0 -0
  200. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/models/categorization/filterbank.rst +0 -0
  201. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/models/categorization/gnn.rst +0 -0
  202. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/models/categorization/interpretable.rst +0 -0
  203. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/models/categorization/lbm.rst +0 -0
  204. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/models/categorization/recurrent.rst +0 -0
  205. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/models/categorization/spd.rst +0 -0
  206. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/models/models.rst +0 -0
  207. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/models/models_table.rst +0 -0
  208. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/models/models_visualization.rst +0 -0
  209. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/docs/sg_execution_times.rst +0 -0
  210. {braindecode-1.8.1.dev172419947 → braindecode-1.8.1.dev172484635}/setup.cfg +0 -0
@@ -13,10 +13,9 @@ The following components are licensed under the Creative Commons Attribution-Non
13
13
 
14
14
  - `braindecode/models/eegminer.py`
15
15
  - `braindecode/models/meta_neuromotor.py`
16
- - `braindecode/models/sleepfm.py`
17
16
  - `braindecode/models/brainmodule.py`
18
- - `braindecode/models/neurorvq.py`
19
- - `braindecode/models/neurorvq_tokenizer.py`
17
+
18
+ As well as class later imported into the `braindecode.models.module` named as GeneralizedGaussianFilter.
20
19
 
21
20
  The `meta_neuromotor.py` file is a derivative of
22
21
  `facebookresearch/generic-neuromotor-interface`, released by Meta Platforms,
@@ -45,32 +44,15 @@ The following components are licensed under the MIT License:
45
44
  - `braindecode/models/ifnet.py`
46
45
  - `braindecode/models/mirepnet.py`
47
46
  - `braindecode/models/popt.py`
48
- - `braindecode/models/tfm_tokenizer.py`
49
47
  - `braindecode/modules/popt_modules.py`
50
- - `braindecode/models/brainomni.py`
51
- - `braindecode/modules/quantization.py`
52
- - `braindecode/modules/linear_attention.py`
53
- - `braindecode/models/seizure_transformer.py`
54
- - `docs/_static/model/seizure_transformer_arch.png`
55
- - `braindecode/models/guetschel2026.py`
56
- - `braindecode/models/tmsanet.py`
57
-
58
- The `brainomni.py` file is a derivative of `OpenTSLab/BrainOmni` (MIT), whose
59
- SEANet codec derives from Meta's `facebookresearch/encodec` (MIT). The
60
- `quantization.py` module holds the residual vector quantization derived from
61
- `lucidrains/vector-quantize-pytorch` (MIT) and the BrainOmni port.
62
- The `linear_attention.py` module is the part of
63
- `lucidrains/linear-attention-transformer` (MIT) that BIOT and TFMTokenizer run.
64
48
 
65
49
  ### Apache-2.0 Licensed Files
66
50
 
67
51
  The following components are licensed under the Apache License 2.0:
68
52
 
69
- - `braindecode/models/axon.py`
70
53
  - `braindecode/models/mvpformer.py`
71
54
  - `braindecode/models/zuna.py`
72
55
  - `braindecode/models/luna.py`
73
- - `braindecode/models/mapa.py`
74
56
  - `braindecode/models/brant.py`
75
57
  - `braindecode/models/diver1.py`
76
58
  - `braindecode/models/mscformer.py`
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: braindecode
3
- Version: 1.8.1.dev172419947
3
+ Version: 1.8.1.dev172484635
4
4
  Summary: Deep learning software to decode EEG, ECG or MEG signals
5
5
  Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Alexandre Gramfort <agramfort@meta.com>
6
6
  Maintainer-email: Alexandre Gramfort <agramfort@meta.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Robin Tibor Schirrmeister <robintibor@gmail.com>
@@ -23,7 +23,6 @@ from .transforms import (
23
23
  SignFlip,
24
24
  SmoothTimeMask,
25
25
  TimeReverse,
26
- TrivialAugment,
27
26
  )
28
27
 
29
28
  __all__ = [
@@ -31,7 +30,6 @@ __all__ = [
31
30
  "IdentityTransform",
32
31
  "Compose",
33
32
  "AugmentedDataLoader",
34
- "TrivialAugment",
35
33
  "TimeReverse",
36
34
  "SignFlip",
37
35
  "FTSurrogate",
@@ -3,7 +3,6 @@
3
3
  # Gustavo Rodrigues <gustavenrique01@gmail.com>
4
4
  # Bruna Lopes <brunajaflopes@gmail.com>
5
5
  # Sarthak Tayal <sarthaktayal2@gmail.com>
6
- # Anton Soloviev <anton@praviel.com>
7
6
  #
8
7
  # License: BSD (3-clause)
9
8
 
@@ -932,7 +931,7 @@ def _rotate_signals(
932
931
  transformed_X = X.clone()
933
932
  sensors_positions = list(sensors_positions_matrix)
934
933
  for s, rot_sensors_matrix in enumerate(rot_sensors_matrices):
935
- rot_sensors_positions = list(rot_sensors_matrix)
934
+ rot_sensors_positions = list(rot_sensors_matrix.T)
936
935
  for time in range(X.shape[-1]):
937
936
  interpolator_t = Rbf(*sensors_positions, X[s, :, time])
938
937
  transformed_X[s, :, time] = torch.from_numpy(
@@ -1094,8 +1093,7 @@ def segmentation_reconstruction(
1094
1093
  y : torch.Tensor
1095
1094
  EEG labels for the example or batch.
1096
1095
  n_segments : int
1097
- Number of segments to use in the batch. Any remaining samples are
1098
- included in the last segment.
1096
+ Number of segments to use in the batch.
1099
1097
  data_classes : list[tuple[int, torch.Tensor]]
1100
1098
  List of tuples. Each tuple contains the class index and the corresponding EEG data.
1101
1099
  rand_indices : array-like
@@ -1135,8 +1133,6 @@ def segmentation_reconstruction(
1135
1133
  for idx_segment in range(n_segments):
1136
1134
  start = idx_segment * segment_size
1137
1135
  end = (idx_segment + 1) * segment_size
1138
- if idx_segment == n_segments - 1:
1139
- end = window_size
1140
1136
 
1141
1137
  # Perform the data augmentation
1142
1138
  X_aug[np.arange(n_trials), :, start:end] = X_class[
@@ -1457,188 +1457,3 @@ class BandRotation(Transform):
1457
1457
  "circular_jitter": self.circular_jitter,
1458
1458
  "random_state": self.rng,
1459
1459
  }
1460
-
1461
-
1462
- class TrivialAugment(Transform):
1463
- """Apply one randomly sampled label-preserving augmentation per example.
1464
-
1465
- For every example, independently samples one transform from the pool
1466
- below and one of ``num_bins`` strengths evenly spaced between that
1467
- transform's bounds, as in TrivialAugment [1]_. Examples that draw the
1468
- same transform and strength are transformed in one call; each pooled
1469
- transform still draws its own randomness per example.
1470
-
1471
- Default pool (no assumption on the signal's unit, sampling frequency or
1472
- montage):
1473
-
1474
- * :class:`TimeReverse` — no strength parameter.
1475
- * :class:`SignFlip` — no strength parameter.
1476
- * :class:`FTSurrogate` — phase noise magnitude, 0.2 to 1.
1477
- * :class:`ChannelsDropout` — channel drop probability, 0.05 to 0.4.
1478
- * :class:`ChannelsShuffle` — shuffle probability, 0.1 to 0.75.
1479
- * :class:`SmoothTimeMask` — mask length as a fraction of the window
1480
- length, 0.05 to 0.25.
1481
- * :class:`GaussianNoise` — noise standard deviation as a fraction of the
1482
- sub-batch standard deviation (volts or microvolts alike), 0.02 to 0.3.
1483
- * :class:`AmplitudeScale` — scale interval ``(1/s, s)``, ``s`` from 1.25
1484
- to 2.5.
1485
-
1486
- ``sfreq`` adds :class:`BandstopFilter` (bandwidth 0.5 to 4 Hz, capped
1487
- 2.5 Hz below Nyquist) and :class:`FrequencyShift` (maximum shift 0.5 to
1488
- 2 Hz); ``sensors_positions_matrix`` adds :class:`SensorsRotation` around
1489
- the z axis (5 to 25 degrees).
1490
-
1491
- Parameters
1492
- ----------
1493
- probability : float, optional
1494
- Probability of augmenting each example. Defaults to 1.0.
1495
- sfreq : float | None, optional
1496
- Sampling frequency of the signals, in Hz. Defaults to None.
1497
- sensors_positions_matrix : array-like | None, optional
1498
- Sensor positions of shape ``(3, n_channels)`` (see
1499
- :class:`SensorsRotation`). Defaults to None.
1500
- num_bins : int, optional
1501
- Number of strength levels per transform. Defaults to 10.
1502
- random_state : int | numpy.random.RandomState, optional
1503
- Seed shared by the per-example sampler and every pooled transform.
1504
- Defaults to None.
1505
-
1506
- Attributes
1507
- ----------
1508
- op_names : list of str
1509
- Names of the transforms in the pool, in sampling order.
1510
-
1511
- References
1512
- ----------
1513
- .. [1] Müller, S. G., & Hutter, F. (2021). TrivialAugment:
1514
- Tuning-free Yet State-of-the-Art Data Augmentation. Proceedings of
1515
- the IEEE/CVF International Conference on Computer Vision (ICCV),
1516
- pp. 774-782.
1517
- """
1518
-
1519
- def __init__(
1520
- self,
1521
- probability=1.0,
1522
- sfreq=None,
1523
- sensors_positions_matrix=None,
1524
- num_bins=10,
1525
- random_state=None,
1526
- ):
1527
- super().__init__(probability=probability, random_state=random_state)
1528
- if not isinstance(num_bins, (int, np.integer)) or num_bins < 1:
1529
- raise ValueError(f"num_bins must be a positive integer, got {num_bins}")
1530
- self.num_bins = int(num_bins)
1531
- rng = self.rng
1532
- # (name, strength bounds or None, make(strength) or None: built per call)
1533
- specs = [
1534
- ("TimeReverse", None, lambda s: TimeReverse(1.0, random_state=rng)),
1535
- ("SignFlip", None, lambda s: SignFlip(1.0, random_state=rng)),
1536
- (
1537
- "FTSurrogate",
1538
- (0.2, 1.0),
1539
- lambda s: FTSurrogate(1.0, phase_noise_magnitude=s, random_state=rng),
1540
- ),
1541
- (
1542
- "ChannelsDropout",
1543
- (0.05, 0.4),
1544
- lambda s: ChannelsDropout(1.0, p_drop=s, random_state=rng),
1545
- ),
1546
- (
1547
- "ChannelsShuffle",
1548
- (0.1, 0.75),
1549
- lambda s: ChannelsShuffle(1.0, p_shuffle=s, random_state=rng),
1550
- ),
1551
- ("SmoothTimeMask", (0.05, 0.25), None),
1552
- ("GaussianNoise", (0.02, 0.3), None),
1553
- (
1554
- "AmplitudeScale",
1555
- (1.25, 2.5),
1556
- lambda s: AmplitudeScale(1.0, interval=(1.0 / s, s), random_state=rng),
1557
- ),
1558
- ]
1559
- if sfreq is not None:
1560
- nyquist = sfreq / 2.0
1561
- # BandstopFilter needs bandwidth < nyquist - 2; keep a margin
1562
- max_bandwidth = min(4.0, nyquist - 2.5)
1563
- if max_bandwidth <= 0.5:
1564
- raise ValueError(
1565
- f"sfreq={sfreq} is too small to sample valid band-stop "
1566
- "bandwidths (needs at least 6.0 Hz)."
1567
- )
1568
- specs += [
1569
- (
1570
- "BandstopFilter",
1571
- (0.5, max_bandwidth),
1572
- lambda s: BandstopFilter(
1573
- 1.0,
1574
- sfreq=sfreq,
1575
- bandwidth=s,
1576
- max_freq=nyquist,
1577
- random_state=rng,
1578
- ),
1579
- ),
1580
- (
1581
- "FrequencyShift",
1582
- (0.5, 2.0),
1583
- lambda s: FrequencyShift(
1584
- 1.0, sfreq=sfreq, max_delta_freq=s, random_state=rng
1585
- ),
1586
- ),
1587
- ]
1588
- if sensors_positions_matrix is not None:
1589
- specs.append(
1590
- (
1591
- "SensorsRotation",
1592
- (5.0, 25.0),
1593
- lambda s: SensorsRotation(
1594
- 1.0,
1595
- sensors_positions_matrix=sensors_positions_matrix,
1596
- max_degrees=s,
1597
- random_state=rng,
1598
- ),
1599
- )
1600
- )
1601
-
1602
- self._pool = []
1603
- for name, bounds, make in specs:
1604
- if bounds is None:
1605
- strengths = [None]
1606
- else:
1607
- strengths = np.linspace(*bounds, self.num_bins).tolist()
1608
- variants = None if make is None else [make(s) for s in strengths]
1609
- self._pool.append((name, strengths, variants))
1610
- # pre-built transforms as submodules (pickle, ``.to()``)
1611
- self._static_transforms = torch.nn.ModuleList(
1612
- v for _, _, variants in self._pool if variants for v in variants
1613
- )
1614
- self.op_names = [name for name, _, _ in self._pool]
1615
-
1616
- def operation(self, X, y):
1617
- """Apply one sampled transform and strength to each example of X."""
1618
- n_strengths = np.array([len(strengths) for _, strengths, _ in self._pool])
1619
- op_ids = self.rng.randint(0, len(self._pool), size=X.shape[0])
1620
- bin_ids = self.rng.randint(0, self.num_bins, size=X.shape[0])
1621
- # magnitude-free transforms collapse all examples onto bin 0
1622
- bin_ids[n_strengths[op_ids] == 1] = 0
1623
- keys = op_ids * self.num_bins + bin_ids
1624
-
1625
- out_X, out_y = X.clone(), y.clone()
1626
- for key in np.unique(keys):
1627
- group = torch.from_numpy(np.flatnonzero(keys == key)).to(X.device)
1628
- op_i, bin_j = divmod(int(key), self.num_bins)
1629
- name, strengths, variants = self._pool[op_i]
1630
- X_sub = X[group]
1631
- if variants is not None:
1632
- transform = variants[bin_j]
1633
- elif name == "SmoothTimeMask":
1634
- n_mask = max(1, int(round(strengths[bin_j] * X.shape[-1])))
1635
- transform = SmoothTimeMask(
1636
- 1.0, mask_len_samples=n_mask, random_state=self.rng
1637
- )
1638
- else: # GaussianNoise, std relative to the sub-batch (unit-free)
1639
- std = strengths[bin_j] * X_sub.std().item()
1640
- transform = GaussianNoise(1.0, std=std, random_state=self.rng)
1641
- tr_X, tr_y = transform(X_sub, y[group])
1642
- out_X[group] = tr_X.to(out_X.dtype)
1643
- out_y[group] = tr_y
1644
- return out_X, out_y
@@ -212,12 +212,11 @@ class EEGClassifier(_EEGNeuralNet, NeuralNetClassifier):
212
212
  the number of predictions depend on the chosen window size and the
213
213
  receptive field of the network. If trials have different lengths,
214
214
  a list with one (n_classes x n_predictions) array per trial.
215
- trial_targets : np.ndarray | list of np.ndarray
216
- Ground-truth targets from the dataset. Only returned when
217
- ``return_targets=True``. An ``np.ndarray`` with a leading trial
218
- dimension: ``(n_trials,)`` for scalar targets, with further
219
- dimensions for multi-value or equal-length sequence targets. If
220
- trial lengths differ, a list with one target array per trial.
215
+ trial_targets : np.ndarray
216
+ Ground-truth targets from the dataset in a 2-dimensional array
217
+ (n_trials x n_targets). Only returned when ``return_targets=True``.
218
+ The number of targets depends on the decoding paradigm and can be
219
+ either a single value, multiple values, or a sequence.
221
220
  """
222
221
  if not self.cropped:
223
222
  warnings.warn(
@@ -14,16 +14,13 @@ from __future__ import annotations
14
14
  import bisect
15
15
  import html as _html
16
16
  import json
17
- import mmap
18
17
  import os
19
18
  import shutil
20
19
  import warnings
21
20
  from abc import abstractmethod
22
21
  from collections import Counter
23
- from collections.abc import Callable, Hashable, Sequence
22
+ from collections.abc import Callable, Hashable
24
23
  from glob import glob
25
- from itertools import chain
26
- from operator import attrgetter
27
24
  from pathlib import Path
28
25
  from typing import Any, Generic, Iterable, no_type_check
29
26
 
@@ -31,7 +28,6 @@ import mne
31
28
  import mne.io
32
29
  import numpy as np
33
30
  import pandas as pd
34
- from mne.io.constants import FIFF
35
31
  from mne.utils import _soft_import
36
32
  from mne.utils.docs import deprecated
37
33
  from torch.utils.data import ConcatDataset, Dataset, IterableDataset
@@ -224,125 +220,6 @@ def _compute_ch_pos(info, targets_from):
224
220
  return pos
225
221
 
226
222
 
227
- _TAG_ROW = attrgetter("kind", "type", "size", "next", "pos")
228
-
229
-
230
- def _tag_rows(tags):
231
- """(kind, type, size, next, pos) of FIF tags as an int64 array (n, 5)."""
232
- flat = chain.from_iterable(map(_TAG_ROW, tags))
233
- return np.fromiter(flat, np.int64, 5 * len(tags)).reshape(-1, 5)
234
-
235
-
236
- class _FifTagTable(Sequence):
237
- """The data-buffer tags of a lazy FIF raw as one int64 array.
238
-
239
- mne's FIF reader keeps one ``Tag`` object per data buffer in
240
- ``raw._raw_extras[i]["ent"]`` (one per second of signal with mne's default
241
- buffers), each with its attribute dict and integers once unpickled. A lazy
242
- dataset of many recordings holds millions of them in RAM, and every forked
243
- DataLoader worker copies the memory pages of those it reads (reference
244
- counts). This holds the same fields in 40 bytes per buffer and returns an
245
- equal ``Tag`` on access, so mne's own reads are unchanged.
246
- """
247
-
248
- def __init__(self, tags):
249
- self.tag_class = type(tags[0])
250
- self.table = _tag_rows(tags)
251
-
252
- def __len__(self):
253
- return len(self.table)
254
-
255
- def __getitem__(self, i):
256
- if isinstance(i, slice):
257
- return [self.tag_class(*row) for row in self.table[i].tolist()]
258
- return self.tag_class(*self.table[i].tolist())
259
-
260
-
261
- _TAG_FIELDS = ("kind", "type", "size", "next", "pos", "data")
262
-
263
-
264
- def _compact_fif_tags(inst):
265
- """Swap the ``Tag`` lists of a FIF raw for `_FifTagTable` (in place).
266
-
267
- Only gap-free lists of directory tags (no ``None``, no ``data``) with mne's
268
- ``Tag`` fields are swapped; anything else is left as mne built it.
269
- """
270
- for extra in getattr(inst, "_raw_extras", ()):
271
- tags = extra.get("ent")
272
- if not isinstance(tags, list) or not tags:
273
- continue
274
- cls = type(tags[0])
275
- if tuple(getattr(cls, "__dataclass_fields__", ())) == _TAG_FIELDS and all(
276
- type(t) is cls and t.data is None for t in tags
277
- ):
278
- extra["ent"] = _FifTagTable(tags)
279
- return inst
280
-
281
-
282
- def _read_fif_window(raw, start, stop, willneed=False):
283
- """Samples ``start:stop`` of a lazy FIF raw, copied from the file in one go.
284
-
285
- mne reads, casts and calibrates the FIF data buffers of a range one at a
286
- time (60 Python steps for a 60-s window saved with 1-s buffers, each through
287
- a buffered file whose buffer is 4 MB on network file systems). Here one
288
- slice of the memory-mapped file holds the bytes of every buffer in the
289
- range and one multiply calibrates them, with mne's arithmetic (float64 data
290
- times ``raw._cals``), so the values equal ``raw._getitem``'s. Returns None
291
- (the caller uses mne) unless ``raw`` is a lazy, single-file, uncompressed
292
- FIF raw of float32 buffers without projector, compensation or gaps.
293
-
294
- With ``willneed=True`` nothing is read and None is returned: the OS is
295
- only asked to start reading the window's bytes into the page cache in the
296
- background (``posix_fadvise(POSIX_FADV_WILLNEED)``).
297
- """
298
- if (
299
- not isinstance(raw, mne.io.Raw)
300
- or raw.preload
301
- or len(raw._raw_extras) != 1
302
- or raw._projector is not None
303
- or raw._comp is not None
304
- ):
305
- return None
306
- extra = raw._raw_extras[0]
307
- fname, bounds = extra["filename"], extra["bounds"]
308
- if not isinstance(fname, Path) or fname.suffix == ".gz":
309
- return None
310
- start, stop = start + raw._first_samps[0], stop + raw._first_samps[0]
311
- first = np.searchsorted(bounds, start, side="right") - 1
312
- tags = extra["ent"]
313
- if isinstance(tags, _FifTagTable):
314
- rows = tags.table[first : np.searchsorted(bounds, stop)]
315
- else:
316
- tags = tags[first : np.searchsorted(bounds, stop)]
317
- if any(t is None for t in tags):
318
- return None
319
- rows = _tag_rows(tags)
320
- if not len(rows) or (rows[:, 1] != FIFF.FIFFT_FLOAT).any():
321
- return None
322
- size, pos = rows[:, 2].tolist(), rows[:, 4].tolist()
323
- if willneed: # only a hint: any error is left to the read itself
324
- try:
325
- with open(fname, "rb") as f:
326
- os.posix_fadvise(
327
- f.fileno(),
328
- pos[0],
329
- pos[-1] + 16 + size[-1] - pos[0],
330
- os.POSIX_FADV_WILLNEED,
331
- )
332
- except OSError:
333
- pass
334
- return None
335
- # mmap: no copy through a 4 MB read buffer, and a cold file is read around
336
- # the window by the kernel (as mne's 4 MB reads did), not window by window
337
- with open(fname, "rb") as f, mmap.mmap(f.fileno(), 0, access=mmap.ACCESS_READ) as m:
338
- buf = m[pos[0] : pos[-1] + 16 + size[-1]]
339
- one = np.concatenate(
340
- [np.frombuffer(buf, ">f4", s // 4, p + 16 - pos[0]) for s, p in zip(size, pos)]
341
- ).reshape(-1, extra["orig_nchan"])[start - bounds[first] : stop - bounds[first]]
342
- picked = one[:, raw._read_picks[0]].T
343
- return np.multiply(picked, raw._cals[:, np.newaxis], order="C")
344
-
345
-
346
223
  def _window_info(crop_inds, sfreq):
347
224
  """Extract window size from crop indices.
348
225
 
@@ -946,11 +823,9 @@ class EEGWindowsDataset(_ZarrMixin, RecordDataset):
946
823
  if self._zarr_data is not None:
947
824
  X = self._zarr_data[:, i_start:i_stop]
948
825
  else:
949
- X = _read_fif_window(self.raw, i_start, i_stop)
950
- if X is None:
951
- X = self.raw._getitem(
952
- (slice(None), slice(i_start, i_stop)), return_times=False
953
- )
826
+ X = self.raw._getitem(
827
+ (slice(None), slice(i_start, i_stop)), return_times=False
828
+ )
954
829
  X = np.array(X, dtype="float32")
955
830
  if self.transform is not None:
956
831
  X = self.transform(X)
@@ -1378,8 +1253,7 @@ class BaseConcatDataset(ConcatDataset, HubDatasetMixin, Generic[T]):
1378
1253
  def __len__(self):
1379
1254
  return self._ensure_cumulative_sizes()[-1]
1380
1255
 
1381
- def _locate(self, idx: int):
1382
- """The dataset that holds item ``idx`` and the item's index in it."""
1256
+ def _get_single_item(self, idx: int):
1383
1257
  if idx < 0:
1384
1258
  if -idx > len(self):
1385
1259
  raise ValueError(
@@ -1393,33 +1267,7 @@ class BaseConcatDataset(ConcatDataset, HubDatasetMixin, Generic[T]):
1393
1267
  sample_idx = idx
1394
1268
  else:
1395
1269
  sample_idx = idx - cumulative_sizes[dataset_idx - 1]
1396
- return self.datasets[dataset_idx], sample_idx
1397
-
1398
- def _get_single_item(self, idx: int):
1399
- ds, i = self._locate(idx)
1400
- return ds[i]
1401
-
1402
- def __getitems__(self, indices):
1403
- """Items ``indices``, as ``[self[i] for i in indices]``.
1404
-
1405
- A :class:`~torch.utils.data.DataLoader` fetches each batch through
1406
- this. The lazy FIF windows of the batch are first requested from the
1407
- OS all at once (``posix_fadvise(POSIX_FADV_WILLNEED)``, where it
1408
- exists), so their reads from disk overlap instead of running one after
1409
- another: on a network file system a batch read from cold files then
1410
- costs about one round trip, not one per window.
1411
- """
1412
- # ponytail: advises the whole batch at once; chunk it if a batch's
1413
- # windows ever outgrow the page cache
1414
- if hasattr(os, "posix_fadvise"):
1415
- for idx in indices:
1416
- if not isinstance(idx, (int, np.integer)):
1417
- continue # e.g. a SequenceSampler tuple: read, not advised
1418
- ds, i = self._locate(idx)
1419
- if isinstance(ds, EEGWindowsDataset) and ds._zarr_data is None:
1420
- _, start, stop = ds.crop_inds[i].tolist()
1421
- _read_fif_window(ds.raw, start, stop, willneed=True)
1422
- return [self[idx] for idx in indices]
1270
+ return self.datasets[dataset_idx][sample_idx]
1423
1271
 
1424
1272
  def __getitem__(self, idx: int | list):
1425
1273
  """
@@ -1824,8 +1672,7 @@ class BaseConcatDataset(ConcatDataset, HubDatasetMixin, Generic[T]):
1824
1672
  kwargs_path = os.path.join(path, ".".join([kwarg_name, "json"]))
1825
1673
  kwargs = getattr(self, kwarg_name)
1826
1674
  if kwargs is not None:
1827
- with open(kwargs_path, "w") as f:
1828
- json.dump(kwargs, f)
1675
+ json.dump(kwargs, open(kwargs_path, "w"))
1829
1676
 
1830
1677
  @property
1831
1678
  def description(self) -> pd.DataFrame:
@@ -1895,10 +1742,7 @@ class BaseConcatDataset(ConcatDataset, HubDatasetMixin, Generic[T]):
1895
1742
  # Create path if it doesn't exist
1896
1743
  os.makedirs(path, exist_ok=True)
1897
1744
 
1898
- # With an offset the caller fills one directory piece by piece (preprocess
1899
- # saves each recording at its index), so the other entries are expected:
1900
- # skip the scan that would stat them all on every call and list them in a warning.
1901
- path_contents = os.listdir(path) if offset == 0 else []
1745
+ path_contents = os.listdir(path)
1902
1746
  n_sub_dirs = len(
1903
1747
  [e for e in path_contents if os.path.isdir(os.path.join(path, e))]
1904
1748
  )
@@ -11,12 +11,10 @@ TUH Abnormal EEG Corpus.
11
11
  from __future__ import annotations
12
12
 
13
13
  import glob
14
- import json
15
14
  import os
16
15
  import re
17
16
  import warnings
18
17
  from datetime import datetime, timezone
19
- from functools import cache
20
18
  from pathlib import Path
21
19
  from typing import Iterable, Literal
22
20
  from unittest import mock
@@ -185,8 +183,11 @@ class TUH(BaseConcatDataset):
185
183
  }
186
184
  raw.rename_channels(mapping_strip)
187
185
 
186
+ montage1005 = mne.channels.make_standard_montage(
187
+ resolve_montage_name("standard_1005")
188
+ )
188
189
  mapping_eeg_names = {
189
- c.upper(): c for c in _standard_1005().ch_names if c.upper() in raw.ch_names
190
+ c.upper(): c for c in montage1005.ch_names if c.upper() in raw.ch_names
190
191
  }
191
192
 
192
193
  # Set channels whose type could not be inferred (defaulted to "eeg") to "misc":
@@ -209,7 +210,10 @@ class TUH(BaseConcatDataset):
209
210
 
210
211
  @staticmethod
211
212
  def _set_montage(raw):
212
- raw.set_montage(_standard_1005(), on_missing="ignore")
213
+ montage = mne.channels.make_standard_montage(
214
+ resolve_montage_name("standard_1005")
215
+ )
216
+ raw.set_montage(montage, on_missing="ignore")
213
217
 
214
218
  @staticmethod
215
219
  def _create_dataset(
@@ -241,11 +245,7 @@ class TUH(BaseConcatDataset):
241
245
  # file paths, use this instead as before
242
246
  if "year" in description:
243
247
  meas_date = meas_date.replace(*description[["year", "month", "day"]])
244
- # FIF (e.g. preprocess(..., save_dir=...)) stores dates from 1901-12-13 to
245
- # 2038-01-19 only: undated recordings (year 1 above) and de-identified ones
246
- # (TUAB has 1899-12-30) keep their date in the description only.
247
- in_fif_range = -(2**31) <= meas_date.timestamp() < 2**31
248
- raw.set_meas_date(meas_date if in_fif_range else None)
248
+ raw.set_meas_date(meas_date)
249
249
 
250
250
  d = {
251
251
  "age": int(age),
@@ -255,9 +255,9 @@ class TUH(BaseConcatDataset):
255
255
  # if not, get it from meas_date in raw.info and add to description
256
256
  # if meas_date is None, create fake one
257
257
  if "year" not in description:
258
- d["year"] = meas_date.year
259
- d["month"] = meas_date.month
260
- d["day"] = meas_date.day
258
+ d["year"] = raw.info["meas_date"].year
259
+ d["month"] = raw.info["meas_date"].month
260
+ d["day"] = raw.info["meas_date"].day
261
261
 
262
262
  # read info relevant for preprocessing from raw without loading it
263
263
  if add_physician_reports:
@@ -269,12 +269,6 @@ class TUH(BaseConcatDataset):
269
269
  return base_dataset
270
270
 
271
271
 
272
- @cache
273
- def _standard_1005():
274
- # Built once per process: set_montage copies the montage before using it.
275
- return mne.channels.make_standard_montage(resolve_montage_name("standard_1005"))
276
-
277
-
278
272
  def _create_description(file_paths, version, ds_name):
279
273
  descriptions = [
280
274
  _parse_description_from_file_path(f, version, ds_name) for f in file_paths
@@ -295,8 +289,7 @@ def _read_date(file_path):
295
289
  date_path = file_path.replace(".edf", "_date.txt")
296
290
  # if date file exists, read it
297
291
  if os.path.exists(date_path):
298
- with open(date_path) as f:
299
- description = json.load(f)
292
+ description = pd.read_json(date_path, typ="series").to_dict()
300
293
  # otherwise read edf file, extract date and store to file
301
294
  else:
302
295
  raw = mne.io.read_raw_edf(file_path, preload=False, verbose="error")