Braindecode 1.8.1.dev170146466__tar.gz → 1.8.1.dev170153392__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {braindecode-1.8.1.dev170146466/braindecode.egg-info → braindecode-1.8.1.dev170153392}/PKG-INFO +1 -1
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/augmentation/__init__.py +0 -2
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/augmentation/base.py +1 -7
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/augmentation/functional.py +13 -133
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/augmentation/transforms.py +2 -104
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/base.py +1 -3
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/mne.py +0 -5
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/tuh.py +1 -2
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datautil/serialization.py +4 -11
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/functional/initialization.py +9 -14
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/atcnet.py +8 -11
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/base.py +1 -13
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/biot.py +2 -4
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/brainbert.py +16 -47
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/ctnet.py +3 -9
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/guetschel2026.py +8 -8
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/labram.py +1 -11
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/luna.py +1 -4
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/mapa.py +12 -20
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/medformer.py +15 -12
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/neurorvq.py +17 -3
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/neurorvq_tokenizer.py +6 -28
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/reve.py +11 -5
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/sinc_shallow.py +0 -15
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/tmsanet.py +0 -11
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/util.py +0 -23
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/zuna.py +26 -77
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/modules/attention.py +10 -25
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/modules/blocks.py +85 -33
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/preprocessing/eegprep_preprocess.py +3 -6
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/preprocessing/preprocess.py +0 -2
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/preprocessing/windowers.py +17 -28
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/regressor.py +1 -6
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/samplers/base.py +2 -13
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/training/scoring.py +1 -4
- braindecode-1.8.1.dev170153392/braindecode/version.py +1 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392/braindecode.egg-info}/PKG-INFO +1 -1
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/docs/api.rst +0 -4
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/docs/whats_new.rst +22 -83
- braindecode-1.8.1.dev170146466/braindecode/version.py +0 -1
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/LICENSE.txt +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/MANIFEST.in +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/NOTICE.txt +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/README.rst +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/__init__.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/classifier.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/__init__.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/_notebook_viewer.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/bbci.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/bcicomp.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/bids/__init__.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/bids/datasets.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/bids/format.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/bids/hub.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/bids/hub_format.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/bids/hub_io.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/bids/hub_validation.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/bids/iterable.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/chb_mit.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/collate.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/moabb.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/nmt.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/registry.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/siena.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/sleep_physio_challe_18.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/sleep_physionet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/utils.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/xy.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datautil/__init__.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datautil/channel_utils.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datautil/hub_formats.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datautil/util.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/eegneuralnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/functional/__init__.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/functional/_real_dft.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/functional/functions.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/__init__.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/attentionbasenet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/attn_sleep.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/axon.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/barista.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/bendr.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/brainmodule.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/brainomni.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/brant.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/cbramod.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/codebrain.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/config.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/contrawr.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/csbrain.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/dance.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/deep4.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/deepsleepnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/dgcnn.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/diver1.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/duin.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/eeg_clip.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/eegconformer.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/eegdino.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/eeginception_erp.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/eeginception_mi.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/eegitnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/eegminer.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/eegnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/eegnex.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/eegpt.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/eegsimpleconv.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/eegsym.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/eegtcnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/emg2qwerty.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/epint.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/fbcnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/fblightconvnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/fbmsnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/gcnsnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/hybrid.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/ifnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/meta_neuromotor.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/mirepnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/mscformer.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/msvtnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/mvpformer.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/neuropose.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/patchedtransformer.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/popt.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/sccnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/seizure_transformer.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/sensingdynamics.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/shallow_fbcsp.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/signal_jepa.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/sleep_stager_blanco_2020.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/sleep_stager_chambon_2018.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/sleepfm.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/sparcnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/sstdpn.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/steegformer.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/summary.csv +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/syncnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/tcformer.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/tcn.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/tfm_tokenizer.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/tidnet.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/tsinception.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/usleep.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/vemg2pose.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/modules/__init__.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/modules/activation.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/modules/channels.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/modules/convolution.py +0 -0
- {braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/modules/dance_modules.py +0 -0
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{braindecode-1.8.1.dev170146466/braindecode.egg-info → braindecode-1.8.1.dev170153392}/PKG-INFO
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Metadata-Version: 2.4
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Name: braindecode
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Version: 1.8.1.
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Version: 1.8.1.dev170153392
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Summary: Deep learning software to decode EEG, ECG or MEG signals
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Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Alexandre Gramfort <agramfort@meta.com>
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Maintainer-email: Alexandre Gramfort <agramfort@meta.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Robin Tibor Schirrmeister <robintibor@gmail.com>
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EEG data in form ``batch_size, n_channels, n_times``. Returned
|
|
1169
|
-
unchanged.
|
|
1170
|
-
y : torch.Tensor
|
|
1171
|
-
Target of length ``batch_size`` holding class indices (float values
|
|
1172
|
-
are accepted when they are integral), or a floating-point tensor of
|
|
1173
|
-
shape ``batch_size, num_classes`` holding target distributions.
|
|
1174
|
-
epsilon : float
|
|
1175
|
-
Smoothing parameter between 0 and 1: the weight of the uniform
|
|
1176
|
-
distribution mixed into the targets. ``0`` returns the unsmoothed
|
|
1177
|
-
targets.
|
|
1178
|
-
num_classes : int | None, optional
|
|
1179
|
-
Number of classes. Required when ``y`` holds class indices; when
|
|
1180
|
-
``y`` already holds distributions, it must match the size of the
|
|
1181
|
-
last dimension of ``y``. Defaults to None.
|
|
1182
|
-
|
|
1183
|
-
Returns
|
|
1184
|
-
-------
|
|
1185
|
-
tuple
|
|
1186
|
-
``X``, ``y``. Where ``X`` is unchanged and ``y`` is a
|
|
1187
|
-
floating-point tensor of shape ``batch_size, num_classes`` whose
|
|
1188
|
-
rows sum to one.
|
|
1189
|
-
|
|
1190
|
-
References
|
|
1191
|
-
----------
|
|
1192
|
-
.. [1] Christian Szegedy, Vincent Vanhoucke, Jonathon Shlens and
|
|
1193
|
-
Zbigniew Wojna (2016). Rethinking the Inception Architecture for
|
|
1194
|
-
Computer Vision. In 2016 IEEE Conference on Computer Vision and
|
|
1195
|
-
Pattern Recognition (CVPR), pp. 2818-2826.
|
|
1196
|
-
Online: https://arxiv.org/abs/1512.00567
|
|
1197
|
-
"""
|
|
1198
|
-
if not isinstance(epsilon, Real) or not 0.0 <= float(epsilon) <= 1.0:
|
|
1199
|
-
raise ValueError(
|
|
1200
|
-
f"epsilon should be a real number between 0 and 1. Got {epsilon!r}."
|
|
1201
|
-
)
|
|
1202
|
-
if num_classes is not None and (
|
|
1203
|
-
not isinstance(num_classes, int)
|
|
1204
|
-
or isinstance(num_classes, bool)
|
|
1205
|
-
or num_classes < 2
|
|
1206
|
-
):
|
|
1207
|
-
raise ValueError(
|
|
1208
|
-
f"num_classes should be an integer of at least 2. Got {num_classes!r}."
|
|
1209
|
-
)
|
|
1210
|
-
|
|
1211
|
-
if y.dim() == 1:
|
|
1212
|
-
# class-index targets: smooth their one-hot encoding
|
|
1213
|
-
if num_classes is None:
|
|
1214
|
-
raise ValueError("num_classes is required when y holds class indices.")
|
|
1215
|
-
if not torch.all(y == y.floor()):
|
|
1216
|
-
raise ValueError(
|
|
1217
|
-
"y holds non-integral values; class-index targets should be "
|
|
1218
|
-
"integers or integral floats."
|
|
1219
|
-
)
|
|
1220
|
-
if y.numel() > 0 and (y.min() < 0 or y.max() >= num_classes):
|
|
1221
|
-
raise ValueError(f"y holds class indices outside [0, {num_classes}).")
|
|
1222
|
-
one_hot_y = one_hot(y.long(), num_classes).to(dtype=X.dtype)
|
|
1223
|
-
return X, one_hot_y * (1.0 - epsilon) + epsilon / num_classes
|
|
1224
|
-
|
|
1225
|
-
if y.is_floating_point() and y.dim() >= 2:
|
|
1226
|
-
# target distributions: interpolate them toward the uniform one
|
|
1227
|
-
n_classes = y.shape[-1]
|
|
1228
|
-
if num_classes is not None and num_classes != n_classes:
|
|
1229
|
-
raise ValueError(
|
|
1230
|
-
f"num_classes ({num_classes}) does not match the size of the "
|
|
1231
|
-
f"last dimension of y ({n_classes})."
|
|
1232
|
-
)
|
|
1233
|
-
if n_classes < 2:
|
|
1234
|
-
raise ValueError(
|
|
1235
|
-
f"y should hold distributions over at least 2 classes. Got {n_classes}."
|
|
1236
|
-
)
|
|
1237
|
-
return X, y * (1.0 - epsilon) + epsilon / n_classes
|
|
1238
|
-
|
|
1239
|
-
raise ValueError(
|
|
1240
|
-
"y should hold class indices or floating-point target distributions "
|
|
1241
|
-
f"with a class dimension; got dtype {y.dtype} and shape "
|
|
1242
|
-
f"{tuple(y.shape)}."
|
|
1243
|
-
)
|
|
1244
|
-
|
|
1245
|
-
|
|
1246
1126
|
def segmentation_reconstruction(
|
|
1247
1127
|
X: torch.Tensor,
|
|
1248
1128
|
y: torch.Tensor,
|
|
@@ -18,7 +18,6 @@ from braindecode.util import resolve_montage_name
|
|
|
18
18
|
|
|
19
19
|
from .base import Transform
|
|
20
20
|
from .functional import (
|
|
21
|
-
_max_float_dtype,
|
|
22
21
|
amplitude_scale,
|
|
23
22
|
band_rotation,
|
|
24
23
|
bandstop_filter,
|
|
@@ -30,7 +29,6 @@ from .functional import (
|
|
|
30
29
|
frequency_shift,
|
|
31
30
|
ft_surrogate,
|
|
32
31
|
gaussian_noise,
|
|
33
|
-
label_smoothing,
|
|
34
32
|
mask_encoding,
|
|
35
33
|
mixup,
|
|
36
34
|
segmentation_reconstruction,
|
|
@@ -496,7 +494,6 @@ class SmoothTimeMask(Transform):
|
|
|
496
494
|
size=X.shape[0],
|
|
497
495
|
),
|
|
498
496
|
device=X.device,
|
|
499
|
-
dtype=_max_float_dtype(X.device),
|
|
500
497
|
) * (seq_length - mask_len_samples)
|
|
501
498
|
return {
|
|
502
499
|
"mask_start_per_sample": mask_start,
|
|
@@ -678,11 +675,7 @@ class FrequencyShift(Transform):
|
|
|
678
675
|
return super().get_augmentation_params(*batch)
|
|
679
676
|
X = batch[0]
|
|
680
677
|
|
|
681
|
-
u = torch.as_tensor(
|
|
682
|
-
self.rng.uniform(size=X.shape[0]),
|
|
683
|
-
device=X.device,
|
|
684
|
-
dtype=_max_float_dtype(X.device),
|
|
685
|
-
)
|
|
678
|
+
u = torch.as_tensor(self.rng.uniform(size=X.shape[0]), device=X.device)
|
|
686
679
|
max_delta_freq = self.max_delta_freq
|
|
687
680
|
if isinstance(max_delta_freq, torch.Tensor):
|
|
688
681
|
max_delta_freq = max_delta_freq.to(X.device)
|
|
@@ -840,10 +833,7 @@ class SensorsRotation(Transform):
|
|
|
840
833
|
if isinstance(max_degrees, torch.Tensor):
|
|
841
834
|
max_degrees = max_degrees.to(X.device)
|
|
842
835
|
random_angles = (
|
|
843
|
-
torch.as_tensor(u, device=X.device
|
|
844
|
-
* 2
|
|
845
|
-
* max_degrees
|
|
846
|
-
- max_degrees
|
|
836
|
+
torch.as_tensor(u, device=X.device) * 2 * max_degrees - max_degrees
|
|
847
837
|
)
|
|
848
838
|
return {
|
|
849
839
|
"sensors_positions_matrix": self.sensors_positions_matrix,
|
|
@@ -1156,98 +1146,6 @@ class CutMix(Mixup):
|
|
|
1156
1146
|
return dict(params, cut_t_start=start, cut_t_len=end - start)
|
|
1157
1147
|
|
|
1158
1148
|
|
|
1159
|
-
class LabelSmoothing(Transform):
|
|
1160
|
-
"""Label smoothing from Szegedy et al. (2016) [1]_.
|
|
1161
|
-
|
|
1162
|
-
Replaces each target with its convex combination with the uniform
|
|
1163
|
-
distribution over the classes, penalizing over-confident predictions.
|
|
1164
|
-
The signals are returned unchanged; only the targets change.
|
|
1165
|
-
|
|
1166
|
-
The smoothed targets are floating-point distributions of shape
|
|
1167
|
-
``batch_size, num_classes`` (each row sums to one), so the training
|
|
1168
|
-
loss must accept target distributions, e.g. soft cross-entropy
|
|
1169
|
-
``-(y * torch.log_softmax(logits, dim=-1)).sum(-1).mean()`` or
|
|
1170
|
-
``torch.nn.KLDivLoss``. The transform composes before target-mixing
|
|
1171
|
-
transforms such as :class:`braindecode.augmentation.Mixup`, whose
|
|
1172
|
-
fractional-target path then mixes the smoothed distributions. The
|
|
1173
|
-
fixed-expansion mode (``n_augmentation > 0``) of
|
|
1174
|
-
:class:`braindecode.augmentation.AugmentedDataLoader` is not supported:
|
|
1175
|
-
it cannot concatenate the unsmoothed original targets with the reshaped
|
|
1176
|
-
smoothed copies.
|
|
1177
|
-
|
|
1178
|
-
Parameters
|
|
1179
|
-
----------
|
|
1180
|
-
epsilon : float
|
|
1181
|
-
Smoothing parameter between 0 and 1: the weight of the uniform
|
|
1182
|
-
distribution mixed into the targets. ``0`` disables smoothing.
|
|
1183
|
-
num_classes : int | None, optional
|
|
1184
|
-
Number of classes. Required when the targets are class indices;
|
|
1185
|
-
when the targets are already distributions of shape
|
|
1186
|
-
``batch_size, num_classes``, it must match their last dimension.
|
|
1187
|
-
Defaults to None.
|
|
1188
|
-
random_state : int | numpy.random.Generator, optional
|
|
1189
|
-
Seed to be used to instantiate numpy random number generator
|
|
1190
|
-
instance. The transform is deterministic, so the seed only feeds
|
|
1191
|
-
the application-probability machinery, which is inactive here.
|
|
1192
|
-
Defaults to None.
|
|
1193
|
-
|
|
1194
|
-
References
|
|
1195
|
-
----------
|
|
1196
|
-
.. [1] Christian Szegedy, Vincent Vanhoucke, Jonathon Shlens and
|
|
1197
|
-
Zbigniew Wojna (2016). Rethinking the Inception Architecture for
|
|
1198
|
-
Computer Vision. In 2016 IEEE Conference on Computer Vision and
|
|
1199
|
-
Pattern Recognition (CVPR), pp. 2818-2826.
|
|
1200
|
-
Online: https://arxiv.org/abs/1512.00567
|
|
1201
|
-
"""
|
|
1202
|
-
|
|
1203
|
-
operation = staticmethod(label_smoothing) # type: ignore[assignment]
|
|
1204
|
-
|
|
1205
|
-
def __init__(self, epsilon, num_classes=None, random_state=None):
|
|
1206
|
-
super().__init__(
|
|
1207
|
-
probability=1.0, # LabelSmoothing has to be applied to whole batches
|
|
1208
|
-
random_state=random_state,
|
|
1209
|
-
)
|
|
1210
|
-
if not isinstance(epsilon, Real) or not 0.0 <= float(epsilon) <= 1.0:
|
|
1211
|
-
raise ValueError(
|
|
1212
|
-
f"epsilon should be a real number between 0 and 1. Got {epsilon!r}."
|
|
1213
|
-
)
|
|
1214
|
-
if num_classes is not None and (
|
|
1215
|
-
not isinstance(num_classes, int)
|
|
1216
|
-
or isinstance(num_classes, bool)
|
|
1217
|
-
or num_classes < 2
|
|
1218
|
-
):
|
|
1219
|
-
raise ValueError(
|
|
1220
|
-
f"num_classes should be an integer of at least 2. Got {num_classes!r}."
|
|
1221
|
-
)
|
|
1222
|
-
self.epsilon = epsilon
|
|
1223
|
-
self.num_classes = num_classes
|
|
1224
|
-
|
|
1225
|
-
def get_augmentation_params(self, *batch):
|
|
1226
|
-
"""Return transform parameters.
|
|
1227
|
-
|
|
1228
|
-
Parameters
|
|
1229
|
-
----------
|
|
1230
|
-
X : tensor.Tensor
|
|
1231
|
-
The data.
|
|
1232
|
-
y : tensor.Tensor
|
|
1233
|
-
The labels.
|
|
1234
|
-
|
|
1235
|
-
Returns
|
|
1236
|
-
-------
|
|
1237
|
-
params : dict
|
|
1238
|
-
Contains
|
|
1239
|
-
|
|
1240
|
-
* epsilon : float
|
|
1241
|
-
Smoothing parameter between 0 and 1.
|
|
1242
|
-
* num_classes : int | None
|
|
1243
|
-
The number of classes.
|
|
1244
|
-
"""
|
|
1245
|
-
return {
|
|
1246
|
-
"epsilon": self.epsilon,
|
|
1247
|
-
"num_classes": self.num_classes,
|
|
1248
|
-
}
|
|
1249
|
-
|
|
1250
|
-
|
|
1251
1149
|
class SegmentationReconstruction(Transform):
|
|
1252
1150
|
"""Segmentation Reconstruction from Lotte (2015) [Lotte2015]_.
|
|
1253
1151
|
|
{braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/base.py
RENAMED
|
@@ -634,9 +634,7 @@ class RecordDataset(Dataset[tuple[np.ndarray, int | str, tuple[int, int, int]]])
|
|
|
634
634
|
f"'{key}' already in description. Please "
|
|
635
635
|
f"rename or set overwrite to True."
|
|
636
636
|
)
|
|
637
|
-
|
|
638
|
-
# Series of the dataset they were created from
|
|
639
|
-
self._description = self._description.drop(key)
|
|
637
|
+
self._description.pop(key)
|
|
640
638
|
self._description = pd.concat([self.description, description])
|
|
641
639
|
|
|
642
640
|
@property
|
{braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/mne.py
RENAMED
|
@@ -159,11 +159,6 @@ def create_from_mne_epochs(
|
|
|
159
159
|
|
|
160
160
|
list_of_windows_ds = []
|
|
161
161
|
for i, epochs in enumerate(list_of_epochs):
|
|
162
|
-
# drop rejected epochs first (on a copy) so that iterating over the
|
|
163
|
-
# epochs stays aligned with ``epochs.events``; preloaded epochs have
|
|
164
|
-
# already dropped them, so skip copying their data
|
|
165
|
-
if not epochs.preload:
|
|
166
|
-
epochs = epochs.copy().drop_bad()
|
|
167
162
|
event_descriptions = epochs.events[:, 2]
|
|
168
163
|
original_trial_starts = epochs.events[:, 0]
|
|
169
164
|
stop = len(epochs.times) - window_size_samples
|
{braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/datasets/tuh.py
RENAMED
|
@@ -122,8 +122,7 @@ class TUH(BaseConcatDataset):
|
|
|
122
122
|
# Assume it is an integer specifying number
|
|
123
123
|
# of recordings to load
|
|
124
124
|
recording_ids = range(recording_ids)
|
|
125
|
-
|
|
126
|
-
descriptions = descriptions.iloc[:, list(recording_ids)]
|
|
125
|
+
descriptions = descriptions[recording_ids]
|
|
127
126
|
|
|
128
127
|
# workaround to ensure warnings are suppressed when running in parallel
|
|
129
128
|
def create_dataset(*args, **kwargs):
|
|
@@ -140,19 +140,15 @@ def _load_signals(fif_file, preload, is_raw):
|
|
|
140
140
|
with open(pkl_file, "rb") as f:
|
|
141
141
|
signals = pickle.load(f)
|
|
142
142
|
|
|
143
|
-
|
|
144
|
-
# this fif file, not to the folder the dataset was copied from.
|
|
145
|
-
if all(Path(f).exists() for f in signals.filenames) and (
|
|
146
|
-
Path(signals.filenames[0]).resolve() == fif_file.resolve()
|
|
147
|
-
):
|
|
143
|
+
if all(Path(f).exists() for f in signals.filenames):
|
|
148
144
|
if preload:
|
|
149
145
|
signals.load_data()
|
|
150
146
|
return _compact_fif_tags(signals)
|
|
151
147
|
else: # This may happen if the file has been moved together with the pickle file.
|
|
152
148
|
warnings.warn(
|
|
153
149
|
f"Pickle file {pkl_file} exists, but the referenced fif "
|
|
154
|
-
"file(s) do not exist
|
|
155
|
-
"
|
|
150
|
+
"file(s) do not exist. Will read the fif file(s) directly "
|
|
151
|
+
"and re-create the pickle file.",
|
|
156
152
|
UserWarning,
|
|
157
153
|
)
|
|
158
154
|
|
|
@@ -224,10 +220,7 @@ def load_concat_dataset(path, preload, ids_to_load=None, target_name=None, n_job
|
|
|
224
220
|
# target_name.json, raw_preproc_kwargs.json, window_kwargs.json,
|
|
225
221
|
# window_preproc_kwargs.json
|
|
226
222
|
if ids_to_load is None:
|
|
227
|
-
|
|
228
|
-
ids_to_load = [
|
|
229
|
-
p.name for p in path.iterdir() if p.is_dir() and p.name.isdigit()
|
|
230
|
-
]
|
|
223
|
+
ids_to_load = [p.name for p in path.iterdir()]
|
|
231
224
|
ids_to_load = sorted(ids_to_load, key=lambda i: int(i))
|
|
232
225
|
ids_to_load = [str(i) for i in ids_to_load]
|
|
233
226
|
first_raw_fif_path = path / ids_to_load[0] / f"{ids_to_load[0]}-raw.fif"
|
|
@@ -1,30 +1,25 @@
|
|
|
1
1
|
import math
|
|
2
2
|
|
|
3
|
-
import torch
|
|
4
3
|
from torch import nn
|
|
5
4
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6
5
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7
6
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def glorot_weight_zero_bias(model):
|
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8
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-
"""
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7
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+
"""Initialize parameters of all modules by initializing weights with.
|
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9
8
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10
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-
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11
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-
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12
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-
(PyTorch's default, or Xavier uniform for the max-norm constrained layers
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13
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-
such as :class:`braindecode.modules.Conv2dWithConstraint`). The name is
|
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14
|
-
kept for backward compatibility.
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9
|
+
glorot uniform/xavier initialization, and setting biases to zero. Weights from
|
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10
|
+
batch norm layers are set to 1.
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15
11
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16
12
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Parameters
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17
13
|
----------
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18
14
|
model : Module
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19
15
|
"""
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20
16
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for module in model.modules():
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21
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-
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22
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-
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23
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-
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24
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-
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25
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-
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26
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-
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27
|
-
nn.init.constant_(bias, 0)
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17
|
+
if hasattr(module, "weight"):
|
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18
|
+
if "BatchNorm" in module.__class__.__name__:
|
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19
|
+
nn.init.constant_(module.weight, 1)
|
|
20
|
+
if hasattr(module, "bias"):
|
|
21
|
+
if module.bias is not None:
|
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22
|
+
nn.init.constant_(module.bias, 0)
|
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28
23
|
|
|
29
24
|
|
|
30
25
|
def rescale_parameter(param, layer_id):
|
{braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/atcnet.py
RENAMED
|
@@ -444,10 +444,8 @@ class ATCNet(EEGModuleMixin, nn.Module):
|
|
|
444
444
|
# ----- Sliding window -----
|
|
445
445
|
sw_concat: list[torch.Tensor] = [] # to store sliding window outputs
|
|
446
446
|
# for w in range(self.n_windows):
|
|
447
|
-
|
|
448
|
-
|
|
449
|
-
for idx, (attention, tcn_module) in enumerate(
|
|
450
|
-
zip(self.attention_blocks, self.temporal_conv_nets)
|
|
447
|
+
for idx, (attention, tcn_module, final_layer) in enumerate(
|
|
448
|
+
zip(self.attention_blocks, self.temporal_conv_nets, self.final_layer)
|
|
451
449
|
):
|
|
452
450
|
conv_feat_w = conv_feat[..., idx : idx + self.Tw]
|
|
453
451
|
# Dimension: (batch_size, F2, Tw)
|
|
@@ -460,14 +458,13 @@ class ATCNet(EEGModuleMixin, nn.Module):
|
|
|
460
458
|
tcn_feat = tcn_module(att_feat)[..., -1]
|
|
461
459
|
# Dimension: (batch_size, F2)
|
|
462
460
|
|
|
463
|
-
|
|
461
|
+
# Outputs of sliding window can be either averaged after being
|
|
462
|
+
# mapped by dense layer or concatenated then mapped by a dense
|
|
463
|
+
# layer
|
|
464
|
+
if not self.concat:
|
|
465
|
+
tcn_feat = final_layer(tcn_feat)
|
|
464
466
|
|
|
465
|
-
|
|
466
|
-
# mapped by dense layer or concatenated then mapped by a dense
|
|
467
|
-
# layer
|
|
468
|
-
if not self.concat:
|
|
469
|
-
for idx, final_layer in enumerate(self.final_layer):
|
|
470
|
-
sw_concat[idx] = final_layer(sw_concat[idx])
|
|
467
|
+
sw_concat.append(tcn_feat)
|
|
471
468
|
|
|
472
469
|
# ----- Aggregation and prediction -----
|
|
473
470
|
if self.concat:
|
{braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/base.py
RENAMED
|
@@ -521,11 +521,6 @@ class EEGModuleMixin(_BaseHubMixin, metaclass=_BraindecodeDocstringMeta):
|
|
|
521
521
|
output_shape : tuple[int, ...]
|
|
522
522
|
shape of the network output for `batch_size==1` (1, ...)
|
|
523
523
|
"""
|
|
524
|
-
# Run in eval mode, so that the probe input does not update BatchNorm
|
|
525
|
-
# running stats or draw dropout masks; restore each module's own mode
|
|
526
|
-
# afterwards (some may have been put in eval mode on purpose).
|
|
527
|
-
modes = {module: module.training for module in self.modules()}
|
|
528
|
-
self.eval()
|
|
529
524
|
with torch.inference_mode():
|
|
530
525
|
try:
|
|
531
526
|
return tuple(
|
|
@@ -545,9 +540,6 @@ class EEGModuleMixin(_BaseHubMixin, metaclass=_BraindecodeDocstringMeta):
|
|
|
545
540
|
if error is None:
|
|
546
541
|
raise
|
|
547
542
|
raise error from exc
|
|
548
|
-
finally:
|
|
549
|
-
for module, training in modes.items():
|
|
550
|
-
module.training = training
|
|
551
543
|
|
|
552
544
|
def get_config(self) -> dict:
|
|
553
545
|
"""Return a JSON-serializable dict of all ``__init__`` parameters.
|
|
@@ -631,11 +623,7 @@ class EEGModuleMixin(_BaseHubMixin, metaclass=_BraindecodeDocstringMeta):
|
|
|
631
623
|
``"pad"``.
|
|
632
624
|
"""
|
|
633
625
|
legacy = getattr(cls, "_legacy_on_non_divisible", None)
|
|
634
|
-
if legacy is None
|
|
635
|
-
return
|
|
636
|
-
# A subclass with its own signature may not take the argument.
|
|
637
|
-
params = inspect.signature(cls.__init__).parameters.values()
|
|
638
|
-
if any(p.name == "on_non_divisible" or p.kind is p.VAR_KEYWORD for p in params):
|
|
626
|
+
if legacy is not None and "on_non_divisible" not in kwargs:
|
|
639
627
|
kwargs["on_non_divisible"] = legacy
|
|
640
628
|
|
|
641
629
|
def _set_n_outputs(self, n_outputs: int) -> None:
|
{braindecode-1.8.1.dev170146466 → braindecode-1.8.1.dev170153392}/braindecode/models/biot.py
RENAMED
|
@@ -186,12 +186,10 @@ class BIOT(EEGModuleMixin, nn.Module):
|
|
|
186
186
|
warn(
|
|
187
187
|
"The hop length is larger than the sampling frequency. "
|
|
188
188
|
+ "This may cause aliasing. Consider using a smaller "
|
|
189
|
-
"hop length.
|
|
189
|
+
"hop length.",
|
|
190
190
|
UserWarning,
|
|
191
191
|
)
|
|
192
|
-
|
|
193
|
-
hop_length = int(self.sfreq // 2)
|
|
194
|
-
self.hop_length = hop_length
|
|
192
|
+
hop_length = self.sfreq // 2
|
|
195
193
|
|
|
196
194
|
if self.input_window_seconds < 1.0:
|
|
197
195
|
warning_msg = (
|