Braindecode 1.3.2__tar.gz → 1.3.2.dev167912513__tar.gz

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  1. {braindecode-1.3.2/braindecode.egg-info → braindecode-1.3.2.dev167912513}/PKG-INFO +40 -8
  2. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/README.rst +36 -6
  3. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/datasets/__init__.py +2 -1
  4. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/datasets/base.py +427 -1
  5. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/datasets/bids/datasets.py +10 -1
  6. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/datasets/mne.py +48 -4
  7. braindecode-1.3.2.dev167912513/braindecode/datasets/tuh.py +997 -0
  8. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/models/__init__.py +4 -0
  9. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/models/base.py +10 -1
  10. braindecode-1.3.2.dev167912513/braindecode/models/cbramod.py +350 -0
  11. braindecode-1.3.2.dev167912513/braindecode/models/eegpt.py +1424 -0
  12. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/models/labram.py +327 -77
  13. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/models/summary.csv +2 -0
  14. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/models/util.py +3 -1
  15. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/modules/__init__.py +4 -0
  16. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/modules/attention.py +134 -0
  17. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/modules/convolution.py +20 -0
  18. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/modules/filter.py +4 -2
  19. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/preprocessing/preprocess.py +17 -0
  20. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/preprocessing/windowers.py +350 -82
  21. braindecode-1.3.2.dev167912513/braindecode/version.py +1 -0
  22. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode/visualization/gradients.py +7 -7
  23. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513/braindecode.egg-info}/PKG-INFO +40 -8
  24. braindecode-1.3.2.dev167912513/braindecode.egg-info/SOURCES.txt +159 -0
  25. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/braindecode.egg-info/requires.txt +3 -1
  26. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/docs/api.rst +7 -0
  27. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/docs/cite.rst +42 -4
  28. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/docs/conf.py +1 -1
  29. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/docs/models/models_categorization.rst +3 -3
  30. braindecode-1.3.2.dev167912513/docs/sg_execution_times.rst +110 -0
  31. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/docs/whats_new.rst +46 -3
  32. {braindecode-1.3.2 → braindecode-1.3.2.dev167912513}/pyproject.toml +16 -14
  33. braindecode-1.3.2/braindecode/datasets/tuh.py +0 -591
  34. braindecode-1.3.2/braindecode/version.py +0 -1
  35. braindecode-1.3.2/braindecode.egg-info/SOURCES.txt +0 -675
  36. braindecode-1.3.2/docs/_build/html/_downloads/090305d06248840b75133975e5121f41/plot_sleep_staging_chambon2018.ipynb +0 -291
  37. braindecode-1.3.2/docs/_build/html/_downloads/0ada35f18bb95235ba2842270483081f/plot_finetune_foundation_model.ipynb +0 -237
  38. braindecode-1.3.2/docs/_build/html/_downloads/0f2bf063e08b7d05b80e0004fcbbb6f9/benchmark_lazy_eager_loading.ipynb +0 -183
  39. braindecode-1.3.2/docs/_build/html/_downloads/137d0b161de96c88644fd65258fc20b5/tutorial_create_fixed_window_length.ipynb +0 -190
  40. braindecode-1.3.2/docs/_build/html/_downloads/1c6590d134fa0befda654e89aa55b2ac/plot_benchmark_preprocessing.ipynb +0 -104
  41. braindecode-1.3.2/docs/_build/html/_downloads/1d879df548fa18be8c23d9ca0dc008d4/plot_data_augmentation.ipynb +0 -259
  42. braindecode-1.3.2/docs/_build/html/_downloads/2466f8ec5c733d0bd65e187b45d875cc/plot_data_augmentation_search.ipynb +0 -302
  43. braindecode-1.3.2/docs/_build/html/_downloads/263464a28477cf8decb861ae6e2e9be7/plot_how_train_test_and_tune.ipynb +0 -375
  44. braindecode-1.3.2/docs/_build/html/_downloads/3862cafd7f0d815e434319ffe525afc8/plot_bcic_iv_2a_moabb_cropped.ipynb +0 -226
  45. braindecode-1.3.2/docs/_build/html/_downloads/408ca4ffd0ea1f76faa9ef602734ac94/plot_tuh_eeg_corpus.ipynb +0 -187
  46. braindecode-1.3.2/docs/_build/html/_downloads/5030717acb00990b394b83314b0797d9/plot_bids_dataset_example.ipynb +0 -97
  47. braindecode-1.3.2/docs/_build/html/_downloads/66ea18b3b9cf0802bbd32bb903ab554e/plot_temporal_generalization.ipynb +0 -312
  48. braindecode-1.3.2/docs/_build/html/_downloads/75a73c7d94f3a671fd3dec28f4031ead/plot_regression.ipynb +0 -212
  49. braindecode-1.3.2/docs/_build/html/_downloads/84fbcd59a346e5e56758285122dc69e2/plot_sleep_staging_eldele2021.ipynb +0 -291
  50. braindecode-1.3.2/docs/_build/html/_downloads/8616a7f968141825e56ab3e3d59be449/plot_tuh_discrete_multitarget.ipynb +0 -169
  51. braindecode-1.3.2/docs/_build/html/_downloads/8b5ba06718764b959e8dea1dd0bb97df/plot_sleep_staging_usleep.ipynb +0 -255
  52. braindecode-1.3.2/docs/_build/html/_downloads/91651c9d4fde110b4a53f5775a91acc5/plot_mne_dataset_example.ipynb +0 -104
  53. braindecode-1.3.2/docs/_build/html/_downloads/93fdea8cbadaf0e3afa2eb2be3ebc483/bcic_iv_4_ecog_trial.ipynb +0 -376
  54. braindecode-1.3.2/docs/_build/html/_downloads/9a4447462c3b255ba7e5ca212bbadd52/plot_bcic_iv_2a_moabb_trial.ipynb +0 -271
  55. braindecode-1.3.2/docs/_build/html/_downloads/9ecad1eb1db853df0ba20dbb97303c02/plot_exca_config.ipynb +0 -439
  56. braindecode-1.3.2/docs/_build/html/_downloads/a2f12129facb042643a99d4b9de1886d/bcic_iv_4_ecog_cropped.ipynb +0 -345
  57. braindecode-1.3.2/docs/_build/html/_downloads/a39e4245738e55e0eb7084c545ed05bc/plot_hyperparameter_tuning_with_scikit-learn.ipynb +0 -257
  58. braindecode-1.3.2/docs/_build/html/_downloads/a6249715d3c30cb41c4af85938cca008/plot_moabb_dataset_example.ipynb +0 -140
  59. braindecode-1.3.2/docs/_build/html/_downloads/a868f9d41de95f5f6defc26e291cf4aa/plot_preprocessing_classes.ipynb +0 -194
  60. braindecode-1.3.2/docs/_build/html/_downloads/a86d0c5f3a882a069df1683a708d3e25/plot_train_in_pure_pytorch_and_pytorch_lightning.ipynb +0 -250
  61. braindecode-1.3.2/docs/_build/html/_downloads/aa8426d97090e7b3062c4e4732c3214a/plot_relative_positioning.ipynb +0 -266
  62. braindecode-1.3.2/docs/_build/html/_downloads/b9d19304ecd233ea7a79d4365316ea49/plot_load_save_datasets.ipynb +0 -176
  63. braindecode-1.3.2/docs/_build/html/_downloads/cb62940d13f700ed2b9e813705e9d437/plot_moabb_benchmark.ipynb +0 -122
  64. braindecode-1.3.2/docs/_build/html/_downloads/cd24c95e5e6c988ebb6ece50ac672ab5/plot_bcic_iv_2a_eegprep_cleaning.ipynb +0 -260
  65. braindecode-1.3.2/docs/_build/html/_downloads/f158ead3e4720f6f4685ff1d3f48dc15/plot_hub_integration.ipynb +0 -201
  66. braindecode-1.3.2/docs/_build/html/_downloads/f3c89d39e947a121c7920b4d415413a2/plot_split_dataset.ipynb +0 -180
  67. braindecode-1.3.2/docs/_build/html/_downloads/f7b38cac92c078838442753121efc297/plot_custom_dataset_example.ipynb +0 -140
  68. braindecode-1.3.2/docs/_build/html/_downloads/fff46913db5173d3ae22c1113acffb45/plot_basic_training_epochs.ipynb +0 -237
  69. braindecode-1.3.2/docs/auto_examples/advanced_training/bcic_iv_4_ecog_cropped.ipynb +0 -345
  70. braindecode-1.3.2/docs/auto_examples/advanced_training/bcic_iv_4_ecog_cropped.rst +0 -626
  71. braindecode-1.3.2/docs/auto_examples/advanced_training/index.rst +0 -173
  72. braindecode-1.3.2/docs/auto_examples/advanced_training/plot_data_augmentation.ipynb +0 -259
  73. braindecode-1.3.2/docs/auto_examples/advanced_training/plot_data_augmentation.rst +0 -1990
  74. braindecode-1.3.2/docs/auto_examples/advanced_training/plot_data_augmentation_search.ipynb +0 -302
  75. braindecode-1.3.2/docs/auto_examples/advanced_training/plot_data_augmentation_search.rst +0 -2219
  76. braindecode-1.3.2/docs/auto_examples/advanced_training/plot_exca_config.ipynb +0 -439
  77. braindecode-1.3.2/docs/auto_examples/advanced_training/plot_exca_config.rst +0 -1002
  78. braindecode-1.3.2/docs/auto_examples/advanced_training/plot_finetune_foundation_model.ipynb +0 -237
  79. braindecode-1.3.2/docs/auto_examples/advanced_training/plot_finetune_foundation_model.rst +0 -611
  80. braindecode-1.3.2/docs/auto_examples/advanced_training/plot_moabb_benchmark.ipynb +0 -122
  81. braindecode-1.3.2/docs/auto_examples/advanced_training/plot_moabb_benchmark.rst +0 -319
  82. braindecode-1.3.2/docs/auto_examples/advanced_training/plot_relative_positioning.ipynb +0 -266
  83. braindecode-1.3.2/docs/auto_examples/advanced_training/plot_relative_positioning.rst +0 -875
  84. braindecode-1.3.2/docs/auto_examples/advanced_training/plot_temporal_generalization.ipynb +0 -312
  85. braindecode-1.3.2/docs/auto_examples/advanced_training/plot_temporal_generalization.rst +0 -944
  86. braindecode-1.3.2/docs/auto_examples/advanced_training/sg_execution_times.rst +0 -58
  87. braindecode-1.3.2/docs/auto_examples/applied_examples/bcic_iv_4_ecog_trial.ipynb +0 -376
  88. braindecode-1.3.2/docs/auto_examples/applied_examples/bcic_iv_4_ecog_trial.rst +0 -581
  89. braindecode-1.3.2/docs/auto_examples/applied_examples/index.rst +0 -137
  90. braindecode-1.3.2/docs/auto_examples/applied_examples/plot_sleep_staging_chambon2018.ipynb +0 -291
  91. braindecode-1.3.2/docs/auto_examples/applied_examples/plot_sleep_staging_chambon2018.rst +0 -2091
  92. braindecode-1.3.2/docs/auto_examples/applied_examples/plot_sleep_staging_eldele2021.ipynb +0 -291
  93. braindecode-1.3.2/docs/auto_examples/applied_examples/plot_sleep_staging_eldele2021.rst +0 -2185
  94. braindecode-1.3.2/docs/auto_examples/applied_examples/plot_sleep_staging_usleep.ipynb +0 -255
  95. braindecode-1.3.2/docs/auto_examples/applied_examples/plot_sleep_staging_usleep.rst +0 -2096
  96. braindecode-1.3.2/docs/auto_examples/applied_examples/plot_tuh_eeg_corpus.ipynb +0 -187
  97. braindecode-1.3.2/docs/auto_examples/applied_examples/plot_tuh_eeg_corpus.rst +0 -497
  98. braindecode-1.3.2/docs/auto_examples/applied_examples/sg_execution_times.rst +0 -52
  99. braindecode-1.3.2/docs/auto_examples/applied_examples/tutorial_create_fixed_window_length.ipynb +0 -190
  100. braindecode-1.3.2/docs/auto_examples/applied_examples/tutorial_create_fixed_window_length.rst +0 -365
  101. braindecode-1.3.2/docs/auto_examples/datasets_io/benchmark_lazy_eager_loading.ipynb +0 -183
  102. braindecode-1.3.2/docs/auto_examples/datasets_io/benchmark_lazy_eager_loading.rst +0 -504
  103. braindecode-1.3.2/docs/auto_examples/datasets_io/index.rst +0 -209
  104. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_benchmark_preprocessing.ipynb +0 -104
  105. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_benchmark_preprocessing.rst +0 -588
  106. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_bids_dataset_example.ipynb +0 -97
  107. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_bids_dataset_example.rst +0 -230
  108. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_custom_dataset_example.ipynb +0 -140
  109. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_custom_dataset_example.rst +0 -323
  110. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_hub_integration.ipynb +0 -201
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  112. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_load_save_datasets.ipynb +0 -176
  113. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_load_save_datasets.rst +0 -494
  114. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_mne_dataset_example.ipynb +0 -104
  115. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_mne_dataset_example.rst +0 -351
  116. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_moabb_dataset_example.ipynb +0 -140
  117. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_moabb_dataset_example.rst +0 -320
  118. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_split_dataset.ipynb +0 -180
  119. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_split_dataset.rst +0 -656
  120. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_tuh_discrete_multitarget.ipynb +0 -169
  121. braindecode-1.3.2/docs/auto_examples/datasets_io/plot_tuh_discrete_multitarget.rst +0 -396
  122. braindecode-1.3.2/docs/auto_examples/datasets_io/sg_execution_times.rst +0 -64
  123. braindecode-1.3.2/docs/auto_examples/index.rst +0 -697
  124. braindecode-1.3.2/docs/auto_examples/model_building/index.rst +0 -191
  125. braindecode-1.3.2/docs/auto_examples/model_building/plot_basic_training_epochs.ipynb +0 -237
  126. braindecode-1.3.2/docs/auto_examples/model_building/plot_basic_training_epochs.rst +0 -1843
  127. braindecode-1.3.2/docs/auto_examples/model_building/plot_bcic_iv_2a_eegprep_cleaning.ipynb +0 -260
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  129. braindecode-1.3.2/docs/auto_examples/model_building/plot_bcic_iv_2a_moabb_cropped.ipynb +0 -226
  130. braindecode-1.3.2/docs/auto_examples/model_building/plot_bcic_iv_2a_moabb_cropped.rst +0 -645
  131. braindecode-1.3.2/docs/auto_examples/model_building/plot_bcic_iv_2a_moabb_trial.ipynb +0 -271
  132. braindecode-1.3.2/docs/auto_examples/model_building/plot_bcic_iv_2a_moabb_trial.rst +0 -616
  133. braindecode-1.3.2/docs/auto_examples/model_building/plot_how_train_test_and_tune.ipynb +0 -375
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  135. braindecode-1.3.2/docs/auto_examples/model_building/plot_hyperparameter_tuning_with_scikit-learn.ipynb +0 -257
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  146. braindecode-1.3.2/docs/generated/activation/braindecode.modules.SafeLog.rst +0 -135
  147. braindecode-1.3.2/docs/generated/attention/braindecode.modules.CAT.rst +0 -130
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  163. braindecode-1.3.2/docs/generated/braindecode.augmentation.AugmentedDataLoader.rst +0 -21
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  191. braindecode-1.3.2/docs/generated/braindecode.augmentation.functional.frequency_shift.rst +0 -12
  192. braindecode-1.3.2/docs/generated/braindecode.augmentation.functional.ft_surrogate.rst +0 -12
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  199. braindecode-1.3.2/docs/generated/braindecode.augmentation.functional.sign_flip.rst +0 -12
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  203. braindecode-1.3.2/docs/generated/braindecode.datasets.BCICompetitionIVDataset4.rst +0 -46
  204. braindecode-1.3.2/docs/generated/braindecode.datasets.BNCI2014_001.rst +0 -33
  205. braindecode-1.3.2/docs/generated/braindecode.datasets.BaseConcatDataset.rst +0 -59
  206. braindecode-1.3.2/docs/generated/braindecode.datasets.CHBMIT.rst +0 -33
  207. braindecode-1.3.2/docs/generated/braindecode.datasets.HGD.rst +0 -33
  208. braindecode-1.3.2/docs/generated/braindecode.datasets.MOABBDataset.rst +0 -33
  209. braindecode-1.3.2/docs/generated/braindecode.datasets.NMT.rst +0 -33
  210. braindecode-1.3.2/docs/generated/braindecode.datasets.RawDataset.rst +0 -21
  211. braindecode-1.3.2/docs/generated/braindecode.datasets.RecordDataset.rst +0 -32
  212. braindecode-1.3.2/docs/generated/braindecode.datasets.SIENA.rst +0 -33
  213. braindecode-1.3.2/docs/generated/braindecode.datasets.SleepPhysionet.rst +0 -33
  214. braindecode-1.3.2/docs/generated/braindecode.datasets.SleepPhysionetChallenge2018.rst +0 -33
  215. braindecode-1.3.2/docs/generated/braindecode.datasets.TUH.rst +0 -33
  216. braindecode-1.3.2/docs/generated/braindecode.datasets.TUHAbnormal.rst +0 -33
  217. braindecode-1.3.2/docs/generated/braindecode.datasets.WindowsDataset.rst +0 -21
  218. braindecode-1.3.2/docs/generated/braindecode.datasets.bids.BIDSDataset.rst +0 -33
  219. braindecode-1.3.2/docs/generated/braindecode.datasets.bids.BIDSEpochsDataset.rst +0 -33
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  222. braindecode-1.3.2/docs/generated/braindecode.datasets.create_from_X_y.rst +0 -12
  223. braindecode-1.3.2/docs/generated/braindecode.datasets.create_from_mne_epochs.rst +0 -12
  224. braindecode-1.3.2/docs/generated/braindecode.datasets.create_from_mne_raw.rst +0 -12
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  226. braindecode-1.3.2/docs/generated/braindecode.datautil.load_concat_dataset.rst +0 -12
  227. braindecode-1.3.2/docs/generated/braindecode.datautil.save_concat_dataset.rst +0 -12
  228. braindecode-1.3.2/docs/generated/braindecode.functional.drop_path.rst +0 -12
  229. braindecode-1.3.2/docs/generated/braindecode.functional.glorot_weight_zero_bias.rst +0 -12
  230. braindecode-1.3.2/docs/generated/braindecode.functional.hilbert_freq.rst +0 -12
  231. braindecode-1.3.2/docs/generated/braindecode.functional.identity.rst +0 -12
  232. braindecode-1.3.2/docs/generated/braindecode.functional.plv_time.rst +0 -12
  233. braindecode-1.3.2/docs/generated/braindecode.functional.rescale_parameter.rst +0 -12
  234. braindecode-1.3.2/docs/generated/braindecode.functional.safe_log.rst +0 -12
  235. braindecode-1.3.2/docs/generated/braindecode.functional.square.rst +0 -12
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  237. braindecode-1.3.2/docs/generated/braindecode.models.AttentionBaseNet.rst +0 -144
  238. braindecode-1.3.2/docs/generated/braindecode.models.AttnSleep.rst +0 -144
  239. braindecode-1.3.2/docs/generated/braindecode.models.BDTCN.rst +0 -144
  240. braindecode-1.3.2/docs/generated/braindecode.models.BENDR.rst +0 -144
  241. braindecode-1.3.2/docs/generated/braindecode.models.BIOT.rst +0 -144
  242. braindecode-1.3.2/docs/generated/braindecode.models.BrainModule.rst +0 -144
  243. braindecode-1.3.2/docs/generated/braindecode.models.CTNet.rst +0 -144
  244. braindecode-1.3.2/docs/generated/braindecode.models.ContraWR.rst +0 -144
  245. braindecode-1.3.2/docs/generated/braindecode.models.Deep4Net.rst +0 -141
  246. braindecode-1.3.2/docs/generated/braindecode.models.DeepSleepNet.rst +0 -144
  247. braindecode-1.3.2/docs/generated/braindecode.models.EEGConformer.rst +0 -151
  248. braindecode-1.3.2/docs/generated/braindecode.models.EEGITNet.rst +0 -141
  249. braindecode-1.3.2/docs/generated/braindecode.models.EEGInceptionERP.rst +0 -141
  250. braindecode-1.3.2/docs/generated/braindecode.models.EEGInceptionMI.rst +0 -144
  251. braindecode-1.3.2/docs/generated/braindecode.models.EEGMiner.rst +0 -144
  252. braindecode-1.3.2/docs/generated/braindecode.models.EEGModuleMixin.rst +0 -61
  253. braindecode-1.3.2/docs/generated/braindecode.models.EEGNeX.rst +0 -144
  254. braindecode-1.3.2/docs/generated/braindecode.models.EEGNet.rst +0 -141
  255. braindecode-1.3.2/docs/generated/braindecode.models.EEGSimpleConv.rst +0 -144
  256. braindecode-1.3.2/docs/generated/braindecode.models.EEGSym.rst +0 -144
  257. braindecode-1.3.2/docs/generated/braindecode.models.EEGTCNet.rst +0 -144
  258. braindecode-1.3.2/docs/generated/braindecode.models.FBCNet.rst +0 -144
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  260. braindecode-1.3.2/docs/generated/braindecode.models.FBMSNet.rst +0 -144
  261. braindecode-1.3.2/docs/generated/braindecode.models.IFNet.rst +0 -144
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  263. braindecode-1.3.2/docs/generated/braindecode.models.Labram.rst +0 -179
  264. braindecode-1.3.2/docs/generated/braindecode.models.MEDFormer.rst +0 -144
  265. braindecode-1.3.2/docs/generated/braindecode.models.MSVTNet.rst +0 -144
  266. braindecode-1.3.2/docs/generated/braindecode.models.PBT.rst +0 -144
  267. braindecode-1.3.2/docs/generated/braindecode.models.REVE.rst +0 -151
  268. braindecode-1.3.2/docs/generated/braindecode.models.SCCNet.rst +0 -144
  269. braindecode-1.3.2/docs/generated/braindecode.models.SPARCNet.rst +0 -144
  270. braindecode-1.3.2/docs/generated/braindecode.models.SSTDPN.rst +0 -144
  271. braindecode-1.3.2/docs/generated/braindecode.models.ShallowFBCSPNet.rst +0 -141
  272. braindecode-1.3.2/docs/generated/braindecode.models.SignalJEPA.rst +0 -144
  273. braindecode-1.3.2/docs/generated/braindecode.models.SignalJEPA_Contextual.rst +0 -149
  274. braindecode-1.3.2/docs/generated/braindecode.models.SignalJEPA_PostLocal.rst +0 -149
  275. braindecode-1.3.2/docs/generated/braindecode.models.SignalJEPA_PreLocal.rst +0 -149
  276. braindecode-1.3.2/docs/generated/braindecode.models.SincShallowNet.rst +0 -144
  277. braindecode-1.3.2/docs/generated/braindecode.models.SleepStagerBlanco2020.rst +0 -144
  278. braindecode-1.3.2/docs/generated/braindecode.models.SleepStagerChambon2018.rst +0 -144
  279. braindecode-1.3.2/docs/generated/braindecode.models.SyncNet.rst +0 -144
  280. braindecode-1.3.2/docs/generated/braindecode.models.TIDNet.rst +0 -144
  281. braindecode-1.3.2/docs/generated/braindecode.models.TSception.rst +0 -144
  282. braindecode-1.3.2/docs/generated/braindecode.models.USleep.rst +0 -144
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  284. braindecode-1.3.2/docs/generated/braindecode.preprocessing.AddEvents.rst +0 -25
  285. braindecode-1.3.2/docs/generated/braindecode.preprocessing.AddProj.rst +0 -25
  286. braindecode-1.3.2/docs/generated/braindecode.preprocessing.AddReferenceChannels.rst +0 -25
  287. braindecode-1.3.2/docs/generated/braindecode.preprocessing.AnnotateAmplitude.rst +0 -38
  288. braindecode-1.3.2/docs/generated/braindecode.preprocessing.AnnotateBreak.rst +0 -38
  289. braindecode-1.3.2/docs/generated/braindecode.preprocessing.AnnotateMovement.rst +0 -38
  290. braindecode-1.3.2/docs/generated/braindecode.preprocessing.AnnotateMuscleZscore.rst +0 -38
  291. braindecode-1.3.2/docs/generated/braindecode.preprocessing.AnnotateNan.rst +0 -38
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  293. braindecode-1.3.2/docs/generated/braindecode.preprocessing.ApplyGradientCompensation.rst +0 -25
  294. braindecode-1.3.2/docs/generated/braindecode.preprocessing.ApplyHilbert.rst +0 -25
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  298. braindecode-1.3.2/docs/generated/braindecode.preprocessing.ComputeCurrentSourceDensity.rst +0 -38
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  310. braindecode-1.3.2/docs/generated/braindecode.preprocessing.FixStimArtifact.rst +0 -38
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@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: braindecode
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- Version: 1.3.2
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+ Version: 1.3.2.dev167912513
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  Summary: Deep learning software to decode EEG, ECG or MEG signals
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  Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Alexandre Gramfort <agramfort@meta.com>
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  Maintainer-email: Alexandre Gramfort <agramfort@meta.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Robin Tibor Schirrmeister <robintibor@gmail.com>
@@ -25,6 +25,7 @@ License-File: NOTICE.txt
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  Requires-Dist: torch>=2.2
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  Requires-Dist: torchaudio>=2.0
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  Requires-Dist: mne>=1.11.0
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+ Requires-Dist: pandas<3.0.0
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  Requires-Dist: mne_bids>=0.18
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  Requires-Dist: skorch>=1.3.0
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  Requires-Dist: rotary_embedding_torch
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+ Requires-Dist: pandas<3.0.0
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  Requires-Dist: moabb>=1.4.3; extra == "moabb"
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  Provides-Extra: eegprep
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  Requires-Dist: transformers>=4.57.0; extra == "tests"
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  Requires-Dist: bids_validator; extra == "tests"
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  Provides-Extra: typing
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- Requires-Dist: exca==0.4; extra == "typing"
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+ Requires-Dist: exca>=0.5.10; extra == "typing"
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  Requires-Dist: numpydantic>=1.7; extra == "typing"
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  Provides-Extra: docs
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  Requires-Dist: sphinx_gallery; extra == "docs"
@@ -82,8 +84,8 @@ Requires-Dist: braindecode[eegprep]; extra == "all"
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  Requires-Dist: braindecode[typing]; extra == "all"
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  Dynamic: license-file
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- .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.8214376.svg
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- :target: https://doi.org/10.5281/zenodo.8214376
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+ .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.17699192.svg
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+ :target: https://doi.org/10.5281/zenodo.17699192
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  :alt: DOI
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  .. image:: https://github.com/braindecode/braindecode/workflows/docs/badge.svg
@@ -171,13 +173,43 @@ https://github.com/braindecode/braindecode/blob/master/CONTRIBUTING.md
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  Citing
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  ########
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174
- If you use Braindecode in scientific work, please cite the software using the Zenodo DOI
175
- shown in the badge below:
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+ If you use Braindecode in scientific work, please cite the software using the global
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+ Zenodo DOI shown in the badge below:
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- .. image:: https://zenodo.org/badge/232335424.svg
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- :target: https://doi.org/10.5281/zenodo.8214376
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+ .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.17699192.svg
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+ :target: https://doi.org/10.5281/zenodo.17699192
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  :alt: DOI
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+ You can use the following BibTeX entry:
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+
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+ .. code-block:: bibtex
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+
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+ @software{braindecode,
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+ author = {Aristimunha, Bruno and
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+ Guetschel, Pierre and
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+ Wimpff, Martin and
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+ Gemein, Lukas and
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+ Rommel, Cedric and
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+ Banville, Hubert and
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+ Sliwowski, Maciej and
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+ Wilson, Daniel and
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+ Brandt, Simon and
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+ Gnassounou, Théo and
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+ Paillard, Joseph and
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+ {Junqueira Lopes}, Bruna and
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+ Sedlar, Sara and
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+ Moreau, Thomas and
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+ Chevallier, Sylvain and
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+ Gramfort, Alexandre and
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+ Schirrmeister, Robin Tibor},
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+ title = {Braindecode: toolbox for decoding raw electrophysiological brain data
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+ with deep learning models},
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+ url = {https://github.com/braindecode/braindecode},
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+ doi = {10.5281/zenodo.17699192},
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+ publisher = {Zenodo},
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+ license = {BSD-3-Clause},
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+ }
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+
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  Additionally, we highly encourage you to cite the article that originally introduced the
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  Braindecode library and has served as a foundational reference for many works on deep
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  learning with EEG recordings. Please use the following reference:
@@ -1,5 +1,5 @@
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- .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.8214376.svg
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- :target: https://doi.org/10.5281/zenodo.8214376
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+ .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.17699192.svg
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+ :target: https://doi.org/10.5281/zenodo.17699192
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  :alt: DOI
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  .. image:: https://github.com/braindecode/braindecode/workflows/docs/badge.svg
@@ -87,13 +87,43 @@ https://github.com/braindecode/braindecode/blob/master/CONTRIBUTING.md
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  Citing
88
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  ########
89
89
 
90
- If you use Braindecode in scientific work, please cite the software using the Zenodo DOI
91
- shown in the badge below:
90
+ If you use Braindecode in scientific work, please cite the software using the global
91
+ Zenodo DOI shown in the badge below:
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92
 
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- .. image:: https://zenodo.org/badge/232335424.svg
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- :target: https://doi.org/10.5281/zenodo.8214376
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+ .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.17699192.svg
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+ :target: https://doi.org/10.5281/zenodo.17699192
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  :alt: DOI
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96
 
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+ You can use the following BibTeX entry:
98
+
99
+ .. code-block:: bibtex
100
+
101
+ @software{braindecode,
102
+ author = {Aristimunha, Bruno and
103
+ Guetschel, Pierre and
104
+ Wimpff, Martin and
105
+ Gemein, Lukas and
106
+ Rommel, Cedric and
107
+ Banville, Hubert and
108
+ Sliwowski, Maciej and
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+ Wilson, Daniel and
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+ Brandt, Simon and
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+ Gnassounou, Théo and
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+ Paillard, Joseph and
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+ {Junqueira Lopes}, Bruna and
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+ Sedlar, Sara and
115
+ Moreau, Thomas and
116
+ Chevallier, Sylvain and
117
+ Gramfort, Alexandre and
118
+ Schirrmeister, Robin Tibor},
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+ title = {Braindecode: toolbox for decoding raw electrophysiological brain data
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+ with deep learning models},
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+ url = {https://github.com/braindecode/braindecode},
122
+ doi = {10.5281/zenodo.17699192},
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+ publisher = {Zenodo},
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+ license = {BSD-3-Clause},
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+ }
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+
97
127
  Additionally, we highly encourage you to cite the article that originally introduced the
98
128
  Braindecode library and has served as a foundational reference for many works on deep
99
129
  learning with EEG recordings. Please use the following reference:
@@ -16,7 +16,7 @@ from .nmt import NMT
16
16
  from .siena import SIENA
17
17
  from .sleep_physio_challe_18 import SleepPhysionetChallenge2018
18
18
  from .sleep_physionet import SleepPhysionet
19
- from .tuh import TUH, TUHAbnormal
19
+ from .tuh import TUH, TUHAbnormal, TUHEvents
20
20
  from .xy import create_from_X_y
21
21
 
22
22
  __all__ = [
@@ -34,6 +34,7 @@ __all__ = [
34
34
  "create_from_mne_epochs",
35
35
  "TUH",
36
36
  "TUHAbnormal",
37
+ "TUHEvents",
37
38
  "SIENA",
38
39
  "NMT",
39
40
  "CHBMIT",
@@ -11,11 +11,13 @@
11
11
  from __future__ import annotations
12
12
 
13
13
  import bisect
14
+ import html as _html
14
15
  import json
15
16
  import os
16
17
  import shutil
17
18
  import warnings
18
19
  from abc import abstractmethod
20
+ from collections import Counter
19
21
  from collections.abc import Callable
20
22
  from glob import glob
21
23
  from typing import Any, Generic, Iterable, no_type_check
@@ -42,6 +44,256 @@ def _create_description(description) -> pd.Series:
42
44
  return description
43
45
 
44
46
 
47
+ def _html_row(label, value):
48
+ """Generate a single HTML table row."""
49
+ label = _html.escape(str(label))
50
+ value = _html.escape(str(value))
51
+ return f"<tr><td><b>{label}</b></td><td>{value}</td></tr>"
52
+
53
+
54
+ _METADATA_INTERNAL_COLS = {
55
+ "i_window_in_trial",
56
+ "i_start_in_trial",
57
+ "i_stop_in_trial",
58
+ "target",
59
+ }
60
+
61
+
62
+ def _metadata_summary(metadata):
63
+ """Summarize window metadata into a dict.
64
+
65
+ Returns a dict with keys: n_windows, target_info, extra_columns,
66
+ window_info, is_lazy.
67
+ """
68
+ is_lazy = not isinstance(metadata, pd.DataFrame)
69
+
70
+ if is_lazy:
71
+ n_windows = len(metadata)
72
+ columns = list(metadata.columns) if hasattr(metadata, "columns") else []
73
+ extra_columns = [str(c) for c in columns if c not in _METADATA_INTERNAL_COLS]
74
+ return {
75
+ "n_windows": n_windows,
76
+ "target_info": None,
77
+ "extra_columns": extra_columns,
78
+ "window_info": None,
79
+ "is_lazy": True,
80
+ }
81
+
82
+ n_windows = len(metadata)
83
+ extra_columns = [
84
+ str(c) for c in metadata.columns if c not in _METADATA_INTERNAL_COLS
85
+ ]
86
+
87
+ target_info = None
88
+ if "target" in metadata.columns:
89
+ targets = metadata["target"]
90
+ n_unique = targets.nunique()
91
+ if n_unique <= 10:
92
+ counts = targets.value_counts().sort_index().to_dict()
93
+ target_info = f"{n_unique} unique ({counts})"
94
+ else:
95
+ target_info = f"{n_unique} unique targets"
96
+
97
+ window_info = None
98
+ if "i_start_in_trial" in metadata.columns and "i_stop_in_trial" in metadata.columns:
99
+ sizes = metadata["i_stop_in_trial"] - metadata["i_start_in_trial"]
100
+ if len(sizes) == 0:
101
+ pass
102
+ elif (min_s := int(sizes.min())) == (max_s := int(sizes.max())):
103
+ window_info = {"min": min_s, "max": max_s, "uniform": True}
104
+ else:
105
+ window_info = {"min": min_s, "max": max_s, "uniform": False}
106
+
107
+ return {
108
+ "n_windows": n_windows,
109
+ "target_info": target_info,
110
+ "extra_columns": extra_columns,
111
+ "window_info": window_info,
112
+ "is_lazy": False,
113
+ }
114
+
115
+
116
+ def _concat_metadata_summary(datasets):
117
+ """Aggregate metadata summary across datasets without full concatenation.
118
+
119
+ Returns a dict with keys: window_info, target_info, extra_columns.
120
+ """
121
+ overall_min = None
122
+ overall_max = None
123
+ target_counts = Counter()
124
+ extra_cols = set()
125
+
126
+ for ds in datasets:
127
+ if hasattr(ds, "windows"):
128
+ md = ds.windows.metadata
129
+ elif hasattr(ds, "metadata"):
130
+ md = ds.metadata
131
+ else:
132
+ continue
133
+ if md is None or len(md) == 0:
134
+ continue
135
+
136
+ extra_cols.update(
137
+ str(c) for c in md.columns if c not in _METADATA_INTERNAL_COLS
138
+ )
139
+
140
+ if "i_start_in_trial" in md.columns and "i_stop_in_trial" in md.columns:
141
+ sizes = md["i_stop_in_trial"] - md["i_start_in_trial"]
142
+ if len(sizes) > 0:
143
+ ds_min, ds_max = int(sizes.min()), int(sizes.max())
144
+ overall_min = (
145
+ ds_min if overall_min is None else min(overall_min, ds_min)
146
+ )
147
+ overall_max = (
148
+ ds_max if overall_max is None else max(overall_max, ds_max)
149
+ )
150
+
151
+ if "target" in md.columns:
152
+ target_counts.update(md["target"].value_counts().to_dict())
153
+
154
+ window_info = None
155
+ if overall_min is not None:
156
+ window_info = {
157
+ "min": overall_min,
158
+ "max": overall_max,
159
+ "uniform": overall_min == overall_max,
160
+ }
161
+
162
+ target_info = None
163
+ if target_counts:
164
+ n_unique = len(target_counts)
165
+ if n_unique <= 10:
166
+ sorted_counts = dict(sorted(target_counts.items()))
167
+ target_info = f"{n_unique} unique ({sorted_counts})"
168
+ else:
169
+ target_info = f"{n_unique} unique targets"
170
+
171
+ return {
172
+ "window_info": window_info,
173
+ "target_info": target_info,
174
+ "extra_columns": sorted(extra_cols),
175
+ }
176
+
177
+
178
+ def _channel_info(mne_obj):
179
+ """Extract channel summary from an mne object.
180
+
181
+ Returns (n_ch, type_str, sfreq).
182
+ """
183
+ info = mne_obj.info
184
+ n_ch = info["nchan"]
185
+ sfreq = info["sfreq"]
186
+ ch_types = mne_obj.get_channel_types()
187
+ type_counts = Counter(ch_types)
188
+ type_str = ", ".join(f"{cnt} {t.upper()}" for t, cnt in sorted(type_counts.items()))
189
+ return n_ch, type_str, sfreq
190
+
191
+
192
+ def _window_info(crop_inds, sfreq):
193
+ """Extract window size from crop indices.
194
+
195
+ Returns (win_samples, win_secs) or None if crop_inds is empty.
196
+ """
197
+ if len(crop_inds) == 0:
198
+ return None
199
+ first = crop_inds[0]
200
+ win_samples = int(first[2] - first[1])
201
+ win_secs = win_samples / sfreq
202
+ return win_samples, win_secs
203
+
204
+
205
+ class _ReprBuilder:
206
+ """Lightweight builder that renders both text and HTML from the same data."""
207
+
208
+ def __init__(self, cls_name, type_display=None):
209
+ self._cls_name = cls_name
210
+ self._type_display = type_display or cls_name
211
+ self._header_parts = []
212
+ self._header_rows = []
213
+ self._items = []
214
+
215
+ def add_header(self, header_text, label, value):
216
+ """Add to both the compact ``<ClassName | ...>`` line and an HTML row."""
217
+ self._header_parts.append(header_text)
218
+ self._header_rows.append((label, value))
219
+ return self
220
+
221
+ def add_row(self, label, value):
222
+ """Add a detail row (text: `` label: value``, HTML: ``<tr>``)."""
223
+ self._items.append(("row", label, value))
224
+ return self
225
+
226
+ def add_footnote(self, text):
227
+ """Add a footnote (text: `` (text)``, HTML: italic ``<td colspan=2>``)."""
228
+ self._items.append(("footnote", text, None))
229
+ return self
230
+
231
+ def to_repr(self):
232
+ if self._header_parts:
233
+ parts = " | ".join(self._header_parts)
234
+ lines = [f"<{self._cls_name} | {parts}>"]
235
+ else:
236
+ lines = [f"<{self._cls_name}>"]
237
+ for kind, label, value in self._items:
238
+ if kind == "row":
239
+ lines.append(f" {label}: {value}")
240
+ else:
241
+ lines.append(f" ({label})")
242
+ return "\n".join(lines)
243
+
244
+ def to_html(self):
245
+ rows = [_html_row("Type", self._type_display)]
246
+ for label, value in self._header_rows:
247
+ rows.append(_html_row(label, value))
248
+ for kind, label, value in self._items:
249
+ if kind == "row":
250
+ html_label = label[0].upper() + label[1:]
251
+ rows.append(_html_row(html_label, value))
252
+ else:
253
+ rows.append(
254
+ f"<tr><td colspan='2'><i>{_html.escape(str(label))}</i></td></tr>"
255
+ )
256
+ table_rows = "\n".join(rows)
257
+ esc_name = _html.escape(str(self._cls_name))
258
+ return (
259
+ f"<table border='1' class='dataframe'>\n"
260
+ f" <thead><tr><th colspan='2'>{esc_name}</th></tr></thead>\n"
261
+ f" <tbody>\n{table_rows}\n </tbody>\n</table>"
262
+ )
263
+
264
+
265
+ def _build_windowed_repr(
266
+ cls_name, n_windows, mne_obj, crop_inds, description, metadata
267
+ ):
268
+ """Build repr for EEGWindowsDataset and WindowsDataset."""
269
+ b = _ReprBuilder(cls_name)
270
+ n_ch, type_str, sfreq = _channel_info(mne_obj)
271
+ b.add_header(f"{n_windows} windows", "Windows", n_windows)
272
+ b.add_header(f"{n_ch} ch ({type_str})", "Channels", f"{n_ch} ({type_str})")
273
+ wi = _window_info(crop_inds, sfreq)
274
+ if wi is not None:
275
+ win_samples, win_secs = wi
276
+ b.add_header(
277
+ f"{win_samples} samples/win ({win_secs:.3f} s)",
278
+ "Window size",
279
+ f"{win_samples} samples ({win_secs:.3f} s)",
280
+ )
281
+ b.add_header(f"{sfreq:.1f} Hz", "Sfreq", f"{sfreq:.1f} Hz")
282
+ if description is not None:
283
+ desc_items = ", ".join(f"{k}={v}" for k, v in description.items())
284
+ b.add_row("description", desc_items)
285
+ if metadata is not None:
286
+ summary = _metadata_summary(metadata)
287
+ if summary["is_lazy"]:
288
+ b.add_row("metadata", f"lazy ({summary['n_windows']} windows)")
289
+ else:
290
+ if summary["target_info"]:
291
+ b.add_row("targets", summary["target_info"])
292
+ if summary["extra_columns"]:
293
+ b.add_row("extra metadata", ", ".join(summary["extra_columns"]))
294
+ return b
295
+
296
+
45
297
  class RecordDataset(Dataset[tuple[np.ndarray, int | str, tuple[int, int, int]]]):
46
298
  def __init__(
47
299
  self,
@@ -94,6 +346,15 @@ class RecordDataset(Dataset[tuple[np.ndarray, int | str, tuple[int, int, int]]])
94
346
  raise ValueError("Transform needs to be a callable.")
95
347
  self._transform = value
96
348
 
349
+ def _build_repr(self):
350
+ return _ReprBuilder(type(self).__name__)
351
+
352
+ def __repr__(self):
353
+ return self._build_repr().to_repr()
354
+
355
+ def _repr_html_(self):
356
+ return self._build_repr().to_html()
357
+
97
358
 
98
359
  # Type of the datasets contained in BaseConcatDataset
99
360
  T = TypeVar("T", bound=RecordDataset)
@@ -148,6 +409,23 @@ class RawDataset(RecordDataset):
148
409
  def __len__(self):
149
410
  return len(self.raw)
150
411
 
412
+ def _build_repr(self):
413
+ b = _ReprBuilder(type(self).__name__)
414
+ n_ch, type_str, sfreq = _channel_info(self.raw)
415
+ n_times = len(self.raw.times)
416
+ duration = n_times / sfreq
417
+ b.add_header(f"{n_ch} ch ({type_str})", "Channels", f"{n_ch} ({type_str})")
418
+ b.add_header(f"{sfreq:.1f} Hz", "Sfreq", f"{sfreq:.1f} Hz")
419
+ b.add_header(
420
+ f"{n_times} samples ({duration:.1f} s)",
421
+ "Samples",
422
+ f"{n_times} ({duration:.1f} s)",
423
+ )
424
+ if self.description is not None:
425
+ desc_items = ", ".join(f"{k}={v}" for k, v in self.description.items())
426
+ b.add_row("description", desc_items)
427
+ return b
428
+
151
429
  def _target_name(self, target_name):
152
430
  if target_name is not None and not isinstance(target_name, (str, tuple, list)):
153
431
  raise ValueError("target_name has to be None, str, tuple or list")
@@ -291,6 +569,16 @@ class EEGWindowsDataset(RecordDataset):
291
569
  def __len__(self):
292
570
  return len(self.crop_inds)
293
571
 
572
+ def _build_repr(self):
573
+ return _build_windowed_repr(
574
+ type(self).__name__,
575
+ len(self),
576
+ self.raw,
577
+ self.crop_inds,
578
+ self.description,
579
+ self.metadata,
580
+ )
581
+
294
582
 
295
583
  @register_dataset
296
584
  class WindowsDataset(RecordDataset):
@@ -329,6 +617,15 @@ class WindowsDataset(RecordDataset):
329
617
  last_target_only: bool = True,
330
618
  ):
331
619
  super().__init__(description, transform)
620
+ self._fast_disk = self._can_use_fast_get_epoch_from_raw(windows)
621
+ if not (self._fast_disk or windows.preload):
622
+ warnings.warn(
623
+ "The provided mne.Epochs object does not meet the requirements for "
624
+ "fast epoch access. This may lead to slow data loading from disk. "
625
+ "Consider preloading the epochs or checking the conditions in "
626
+ "WindowsDataset._can_use_fast_get_epoch_from_raw.",
627
+ UserWarning,
628
+ )
332
629
  self.windows = windows
333
630
  self.last_target_only = last_target_only
334
631
  if targets_from not in ("metadata", "channels"):
@@ -345,6 +642,20 @@ class WindowsDataset(RecordDataset):
345
642
  self.raw_preproc_kwargs: list[dict[str, Any]] = []
346
643
  self.window_preproc_kwargs: list[dict[str, Any]] = []
347
644
 
645
+ @staticmethod
646
+ def _can_use_fast_get_epoch_from_raw(epochs: mne.BaseEpochs) -> bool:
647
+ """Check if we can use the fast _get_epoch_from_raw method,
648
+ or if we need to use the slow get_data method."""
649
+ return (
650
+ not epochs.preload
651
+ and epochs._bad_dropped
652
+ and epochs.detrend is None
653
+ and not epochs._do_baseline # baseline is None
654
+ and (epochs._decim == 1)
655
+ and epochs._offset is None
656
+ and epochs._projector is None
657
+ )
658
+
348
659
  def __getitem__(self, index: int):
349
660
  """Get a window and its target.
350
661
 
@@ -362,7 +673,10 @@ class WindowsDataset(RecordDataset):
362
673
  np.ndarray
363
674
  Crop indices.
364
675
  """
365
- X = self.windows.get_data(item=index)[0].astype("float32")
676
+ if self._fast_disk:
677
+ X = self.windows._get_epoch_from_raw(index).astype("float32")
678
+ else:
679
+ X = self.windows.get_data(item=index)[0].astype("float32")
366
680
  if self.transform is not None:
367
681
  X = self.transform(X)
368
682
  if self.targets_from == "metadata":
@@ -383,6 +697,16 @@ class WindowsDataset(RecordDataset):
383
697
  def __len__(self) -> int:
384
698
  return len(self.windows.events)
385
699
 
700
+ def _build_repr(self):
701
+ return _build_windowed_repr(
702
+ type(self).__name__,
703
+ len(self),
704
+ self.windows,
705
+ self.crop_inds,
706
+ self.description,
707
+ self.windows.metadata,
708
+ )
709
+
386
710
 
387
711
  @register_dataset
388
712
  class BaseConcatDataset(ConcatDataset, HubDatasetMixin, Generic[T]):
@@ -533,8 +857,12 @@ class BaseConcatDataset(ConcatDataset, HubDatasetMixin, Generic[T]):
533
857
  If a dict then each key will be used in the returned
534
858
  splits dict and each value should be a list of int.
535
859
  property : str
860
+ :bdg-warning:`Deprecated`
861
+
536
862
  Some property which is listed in the info DataFrame.
537
863
  split_ids : list | dict
864
+ :bdg-warning:`Deprecated`
865
+
538
866
  List of indices to be combined in a subset.
539
867
  It can be a list of int or a list of list of int.
540
868
 
@@ -883,3 +1211,101 @@ class BaseConcatDataset(ConcatDataset, HubDatasetMixin, Generic[T]):
883
1211
  target_file_path = os.path.join(sub_dir, "target_name.json")
884
1212
  with open(target_file_path, "w") as f:
885
1213
  json.dump({"target_name": ds.target_name}, f)
1214
+
1215
+ @staticmethod
1216
+ def _signal_summary(ds):
1217
+ """Return (mne_obj, is_windowed) from a dataset."""
1218
+ if hasattr(ds, "windows"):
1219
+ mne_obj = ds.windows
1220
+ elif hasattr(ds, "raw"):
1221
+ mne_obj = ds.raw
1222
+ else:
1223
+ return None, False
1224
+ is_windowed = hasattr(ds, "crop_inds")
1225
+ return mne_obj, is_windowed
1226
+
1227
+ def _build_repr(self):
1228
+ n_ds = len(self.datasets)
1229
+ b = _ReprBuilder("BaseConcatDataset")
1230
+ if n_ds == 0:
1231
+ b.add_header("0 datasets", "Recordings", 0)
1232
+ return b
1233
+
1234
+ n_total = len(self)
1235
+ ds_type = type(self.datasets[0]).__name__
1236
+ first_ds = self.datasets[0]
1237
+ mne_obj, is_windowed = self._signal_summary(first_ds)
1238
+
1239
+ b._type_display = f"BaseConcatDataset of {ds_type}"
1240
+ b.add_header(f"{n_ds} {ds_type}(s)", "Recordings", n_ds)
1241
+ b.add_header(f"{n_total} total samples", "Total samples", n_total)
1242
+
1243
+ if mne_obj is not None:
1244
+ n_ch, type_str, sfreq = _channel_info(mne_obj)
1245
+ b.add_row("Sfreq*", f"{sfreq:.1f} Hz")
1246
+ b.add_row("Channels*", f"{n_ch} ({type_str})")
1247
+
1248
+ ch_names = mne_obj.info["ch_names"]
1249
+ if len(ch_names) <= 10:
1250
+ ch_str = ", ".join(ch_names)
1251
+ else:
1252
+ ch_str = (
1253
+ ", ".join(ch_names[:10]) + f", ... (+{len(ch_names) - 10} more)"
1254
+ )
1255
+ b.add_row("Ch. names*", ch_str)
1256
+
1257
+ montage = mne_obj.get_montage()
1258
+ if montage is not None:
1259
+ b.add_row("Montage*", montage.get_positions()["coord_frame"])
1260
+
1261
+ if not is_windowed:
1262
+ n_times = len(mne_obj.times)
1263
+ duration = n_times / sfreq
1264
+ b.add_row("Duration*", f"{duration:.1f} s")
1265
+
1266
+ b.add_footnote("* from first recording")
1267
+
1268
+ desc = self.description
1269
+ if desc is not None and not desc.empty:
1270
+ col_str = ", ".join(str(c) for c in desc.columns)
1271
+ b.add_row(
1272
+ "Description",
1273
+ f"{desc.shape[0]} recordings × {desc.shape[1]} columns [{col_str}]",
1274
+ )
1275
+
1276
+ if is_windowed:
1277
+ try:
1278
+ summary = _concat_metadata_summary(self.datasets)
1279
+ if summary["window_info"] is not None and mne_obj is not None:
1280
+ wi = summary["window_info"]
1281
+ if wi["uniform"]:
1282
+ win_secs = wi["min"] / sfreq
1283
+ b.add_row(
1284
+ "Window",
1285
+ f"{wi['min']} samples ({win_secs:.3f} s)",
1286
+ )
1287
+ else:
1288
+ min_secs = wi["min"] / sfreq
1289
+ max_secs = wi["max"] / sfreq
1290
+ b.add_row(
1291
+ "Window",
1292
+ f"{wi['min']}-{wi['max']} samples"
1293
+ f" ({min_secs:.3f}-{max_secs:.3f} s)",
1294
+ )
1295
+ if summary["target_info"]:
1296
+ b.add_row("Targets", summary["target_info"])
1297
+ if summary["extra_columns"]:
1298
+ b.add_row(
1299
+ "Extra meta",
1300
+ ", ".join(summary["extra_columns"]),
1301
+ )
1302
+ except (TypeError, AttributeError):
1303
+ pass
1304
+
1305
+ return b
1306
+
1307
+ def __repr__(self):
1308
+ return self._build_repr().to_repr()
1309
+
1310
+ def _repr_html_(self):
1311
+ return self._build_repr().to_html()
@@ -137,6 +137,10 @@ class BIDSDataset(BaseConcatDataset):
137
137
  )
138
138
  datatypes: str | list[str] | None = None
139
139
  check: bool = False
140
+ # Loading arguments for mne_bids.read_raw_bids:
141
+ extra_params: dict | None = None
142
+ on_ch_mismatch: str = "raise"
143
+ # Other arguments:
140
144
  preload: bool = False
141
145
  n_jobs: int = 1
142
146
 
@@ -182,7 +186,12 @@ class BIDSDataset(BaseConcatDataset):
182
186
 
183
187
  def _get_dataset(self, bids_path: mne_bids.BIDSPath) -> RawDataset:
184
188
  description = _description_from_bids_path(bids_path)
185
- raw = mne_bids.read_raw_bids(bids_path, verbose=False)
189
+ raw = mne_bids.read_raw_bids(
190
+ bids_path,
191
+ verbose=False,
192
+ on_ch_mismatch=self.on_ch_mismatch,
193
+ extra_params=self.extra_params,
194
+ )
186
195
  if self.preload:
187
196
  raw.load_data()
188
197
  return RawDataset(raw, description)