Braindecode 1.3.0.dev184419601__tar.gz → 1.3.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- braindecode-1.3.1/PKG-INFO +230 -0
- braindecode-1.3.1/README.rst +146 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/augmentation/__init__.py +5 -3
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/augmentation/base.py +8 -5
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/augmentation/functional.py +122 -18
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/augmentation/transforms.py +117 -34
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/classifier.py +11 -16
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/__init__.py +5 -3
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/base.py +34 -15
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/bbci.py +13 -14
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/bcicomp.py +4 -5
- braindecode-1.3.1/braindecode/datasets/bids/__init__.py +54 -0
- braindecode-1.3.0.dev184419601/braindecode/datasets/bids.py → braindecode-1.3.1/braindecode/datasets/bids/datasets.py +12 -18
- braindecode-1.3.1/braindecode/datasets/bids/format.py +717 -0
- braindecode-1.3.1/braindecode/datasets/bids/hub.py +987 -0
- braindecode-1.3.1/braindecode/datasets/bids/hub_format.py +810 -0
- braindecode-1.3.1/braindecode/datasets/bids/hub_io.py +197 -0
- braindecode-1.3.1/braindecode/datasets/bids/hub_validation.py +114 -0
- braindecode-1.3.0.dev184419601/braindecode/datasets/experimental.py → braindecode-1.3.1/braindecode/datasets/bids/iterable.py +8 -6
- braindecode-1.3.1/braindecode/datasets/chb_mit.py +163 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/mne.py +19 -19
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/moabb.py +10 -10
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/nmt.py +58 -56
- braindecode-1.3.1/braindecode/datasets/registry.py +120 -0
- braindecode-1.3.1/braindecode/datasets/siena.py +162 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/sleep_physio_challe_18.py +3 -5
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/sleep_physionet.py +5 -5
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/tuh.py +21 -18
- braindecode-1.3.1/braindecode/datasets/utils.py +67 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/xy.py +10 -9
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datautil/__init__.py +3 -3
- braindecode-1.3.1/braindecode/datautil/hub_formats.py +180 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datautil/serialization.py +22 -21
- braindecode-1.3.1/braindecode/datautil/util.py +154 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/eegneuralnet.py +22 -52
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/functional/functions.py +7 -10
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/functional/initialization.py +3 -2
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/__init__.py +15 -4
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/atcnet.py +43 -39
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/attentionbasenet.py +37 -41
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/attn_sleep.py +26 -24
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/base.py +6 -6
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/bendr.py +50 -26
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/biot.py +61 -30
- braindecode-1.3.1/braindecode/models/brainmodule.py +845 -0
- braindecode-1.3.1/braindecode/models/config.py +233 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/contrawr.py +5 -5
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/ctnet.py +35 -35
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/deep4.py +5 -5
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/deepsleepnet.py +7 -7
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegconformer.py +31 -26
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eeginception_erp.py +2 -2
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eeginception_mi.py +6 -6
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegitnet.py +5 -5
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegminer.py +1 -1
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegnet.py +3 -3
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegnex.py +2 -2
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegsimpleconv.py +2 -2
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegsym.py +7 -7
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegtcnet.py +6 -6
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/fbcnet.py +2 -2
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/fblightconvnet.py +3 -3
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/fbmsnet.py +3 -3
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/hybrid.py +2 -2
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/ifnet.py +5 -5
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/labram.py +70 -46
- braindecode-1.3.1/braindecode/models/luna.py +891 -0
- braindecode-1.3.1/braindecode/models/medformer.py +760 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/msvtnet.py +15 -15
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/patchedtransformer.py +55 -55
- braindecode-1.3.1/braindecode/models/reve.py +843 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/sccnet.py +2 -2
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/shallow_fbcsp.py +5 -3
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/signal_jepa.py +39 -12
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/sinc_shallow.py +3 -4
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/sleep_stager_blanco_2020.py +2 -2
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/sleep_stager_chambon_2018.py +2 -2
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/sparcnet.py +8 -8
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/sstdpn.py +869 -869
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/summary.csv +19 -15
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/syncnet.py +2 -2
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/tcn.py +5 -5
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/tidnet.py +3 -3
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/tsinception.py +3 -3
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/usleep.py +7 -7
- braindecode-1.3.1/braindecode/models/util.py +369 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/__init__.py +9 -1
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/activation.py +29 -3
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/attention.py +123 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/blocks.py +53 -1
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/convolution.py +53 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/filter.py +31 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/layers.py +84 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/linear.py +22 -1
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/stats.py +10 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/util.py +9 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/wrapper.py +17 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/preprocessing/__init__.py +5 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/preprocessing/eegprep_preprocess.py +134 -19
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/preprocessing/mne_preprocess.py +56 -25
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/preprocessing/preprocess.py +129 -41
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/preprocessing/util.py +11 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/regressor.py +15 -18
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/samplers/ssl.py +1 -1
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/util.py +38 -28
- braindecode-1.3.1/braindecode/version.py +1 -0
- braindecode-1.3.1/braindecode.egg-info/PKG-INFO +230 -0
- braindecode-1.3.1/braindecode.egg-info/SOURCES.txt +675 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode.egg-info/requires.txt +26 -16
- braindecode-1.3.1/docs/_build/html/_downloads/090305d06248840b75133975e5121f41/plot_sleep_staging_chambon2018.ipynb +291 -0
- braindecode-1.3.1/docs/_build/html/_downloads/0ada35f18bb95235ba2842270483081f/plot_finetune_foundation_model.ipynb +237 -0
- braindecode-1.3.1/docs/_build/html/_downloads/0f2bf063e08b7d05b80e0004fcbbb6f9/benchmark_lazy_eager_loading.ipynb +183 -0
- braindecode-1.3.1/docs/_build/html/_downloads/137d0b161de96c88644fd65258fc20b5/tutorial_create_fixed_window_length.ipynb +190 -0
- braindecode-1.3.1/docs/_build/html/_downloads/1c6590d134fa0befda654e89aa55b2ac/plot_benchmark_preprocessing.ipynb +104 -0
- braindecode-1.3.1/docs/_build/html/_downloads/1d879df548fa18be8c23d9ca0dc008d4/plot_data_augmentation.ipynb +259 -0
- braindecode-1.3.1/docs/_build/html/_downloads/2466f8ec5c733d0bd65e187b45d875cc/plot_data_augmentation_search.ipynb +302 -0
- braindecode-1.3.1/docs/_build/html/_downloads/263464a28477cf8decb861ae6e2e9be7/plot_how_train_test_and_tune.ipynb +375 -0
- braindecode-1.3.1/docs/_build/html/_downloads/3862cafd7f0d815e434319ffe525afc8/plot_bcic_iv_2a_moabb_cropped.ipynb +226 -0
- braindecode-1.3.1/docs/_build/html/_downloads/408ca4ffd0ea1f76faa9ef602734ac94/plot_tuh_eeg_corpus.ipynb +187 -0
- braindecode-1.3.1/docs/_build/html/_downloads/5030717acb00990b394b83314b0797d9/plot_bids_dataset_example.ipynb +97 -0
- braindecode-1.3.1/docs/_build/html/_downloads/66ea18b3b9cf0802bbd32bb903ab554e/plot_temporal_generalization.ipynb +312 -0
- braindecode-1.3.1/docs/_build/html/_downloads/75a73c7d94f3a671fd3dec28f4031ead/plot_regression.ipynb +212 -0
- braindecode-1.3.1/docs/_build/html/_downloads/84fbcd59a346e5e56758285122dc69e2/plot_sleep_staging_eldele2021.ipynb +291 -0
- braindecode-1.3.1/docs/_build/html/_downloads/8616a7f968141825e56ab3e3d59be449/plot_tuh_discrete_multitarget.ipynb +169 -0
- braindecode-1.3.1/docs/_build/html/_downloads/8b5ba06718764b959e8dea1dd0bb97df/plot_sleep_staging_usleep.ipynb +255 -0
- braindecode-1.3.1/docs/_build/html/_downloads/91651c9d4fde110b4a53f5775a91acc5/plot_mne_dataset_example.ipynb +104 -0
- braindecode-1.3.1/docs/_build/html/_downloads/93fdea8cbadaf0e3afa2eb2be3ebc483/bcic_iv_4_ecog_trial.ipynb +376 -0
- braindecode-1.3.1/docs/_build/html/_downloads/9a4447462c3b255ba7e5ca212bbadd52/plot_bcic_iv_2a_moabb_trial.ipynb +271 -0
- braindecode-1.3.1/docs/_build/html/_downloads/9ecad1eb1db853df0ba20dbb97303c02/plot_exca_config.ipynb +439 -0
- braindecode-1.3.1/docs/_build/html/_downloads/a2f12129facb042643a99d4b9de1886d/bcic_iv_4_ecog_cropped.ipynb +345 -0
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- braindecode-1.3.1/docs/_build/html/_downloads/a6249715d3c30cb41c4af85938cca008/plot_moabb_dataset_example.ipynb +140 -0
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- braindecode-1.3.1/docs/auto_examples/advanced_training/plot_moabb_benchmark.rst +231 -0
- braindecode-1.3.1/docs/auto_examples/advanced_training/plot_relative_positioning.ipynb +266 -0
- braindecode-1.3.1/docs/auto_examples/advanced_training/plot_relative_positioning.rst +689 -0
- braindecode-1.3.1/docs/auto_examples/advanced_training/plot_temporal_generalization.ipynb +312 -0
- braindecode-1.3.1/docs/auto_examples/advanced_training/plot_temporal_generalization.rst +807 -0
- braindecode-1.3.1/docs/auto_examples/advanced_training/sg_execution_times.rst +58 -0
- braindecode-1.3.1/docs/auto_examples/applied_examples/bcic_iv_4_ecog_trial.ipynb +376 -0
- braindecode-1.3.1/docs/auto_examples/applied_examples/bcic_iv_4_ecog_trial.rst +581 -0
- braindecode-1.3.1/docs/auto_examples/applied_examples/index.rst +137 -0
- braindecode-1.3.1/docs/auto_examples/applied_examples/plot_sleep_staging_chambon2018.ipynb +291 -0
- braindecode-1.3.1/docs/auto_examples/applied_examples/plot_sleep_staging_chambon2018.rst +521 -0
- braindecode-1.3.1/docs/auto_examples/applied_examples/plot_sleep_staging_eldele2021.ipynb +291 -0
- braindecode-1.3.1/docs/auto_examples/applied_examples/plot_sleep_staging_eldele2021.rst +519 -0
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- braindecode-1.3.1/docs/auto_examples/applied_examples/plot_sleep_staging_usleep.rst +468 -0
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- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/MANIFEST.in +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/NOTICE.txt +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/__init__.py +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datautil/channel_utils.py +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/functional/__init__.py +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/parametrization.py +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/preprocessing/windowers.py +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/samplers/__init__.py +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/samplers/base.py +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/training/__init__.py +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/training/callbacks.py +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/training/losses.py +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/training/scoring.py +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/visualization/__init__.py +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/visualization/confusion_matrices.py +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/visualization/gradients.py +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode.egg-info/dependency_links.txt +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode.egg-info/top_level.txt +0 -0
- {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/docs/Makefile +0 -0
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Name: braindecode
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Version: 1.3.1
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Summary: Deep learning software to decode EEG, ECG or MEG signals
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Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Alexandre Gramfort <agramfort@meta.com>
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Maintainer-email: Alexandre Gramfort <agramfort@meta.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Robin Tibor Schirrmeister <robintibor@gmail.com>
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Keywords: python,deep-learning,neuroscience,pytorch,meg,eeg,neuroimaging,electroencephalography,magnetoencephalography,electrocorticography,ecog,electroencephalogram
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Braindecode
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Installation Braindecode
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Additional Components
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=====================
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Some components within this repository are licensed under the Creative Commons
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Attribution-NonCommercial 4.0 International License.
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EEG labels for the example or batch.
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phase_noise_magnitude: float
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+
phase_noise_magnitude : float
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Float between 0 and 1 setting the range over which the phase
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perturbation is uniformly sampled:
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[0, `phase_noise_magnitude` * 2 * `pi`].
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@@ -151,7 +152,7 @@ def ft_surrogate(
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Whether to sample phase perturbations independently for each channel or
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not. It is advised to set it to False when spatial information is
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important for the task, like in BCI.
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random_state: int | numpy.random.Generator, optional
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+
random_state : int | numpy.random.Generator, optional
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Used to draw the phase perturbation. Defaults to None.
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Returns
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@@ -288,10 +289,10 @@ def channels_shuffle(
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EEG input example or batch.
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y : torch.Tensor
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EEG labels for the example or batch.
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p_shuffle: float | None
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+
p_shuffle : float | None
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Float between 0 and 1 setting the probability of including the channel
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in the set of permutted channels.
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random_state: int | numpy.random.Generator, optional
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+
random_state : int | numpy.random.Generator, optional
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Seed to be used to instantiate numpy random number generator instance.
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Used to sample which channels to shuffle and to carry the shuffle.
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Defaults to None.
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@@ -334,7 +335,7 @@ def gaussian_noise(
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EEG labels for the example or batch.
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std : float
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Standard deviation to use for the additive noise.
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-
random_state: int | numpy.random.Generator, optional
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+
random_state : int | numpy.random.Generator, optional
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Seed to be used to instantiate numpy random number generator instance.
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Defaults to None.
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@@ -467,7 +468,8 @@ def bandstop_filter(
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bandwidth: float,
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469
|
freqs_to_notch: npt.ArrayLike | None,
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|
) -> tuple[torch.Tensor, torch.Tensor]:
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470
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-
"""Apply a band-stop filter with desired bandwidth at the desired frequency
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+
"""Apply a band-stop filter with desired bandwidth at the desired frequency.
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472
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+
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position.
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472
474
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475
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Suggested e.g. in [1]_ and [2]_
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@@ -619,6 +621,7 @@ def _torch_legval(
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619
621
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) -> torch.Tensor:
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620
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"""
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621
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Evaluate a Legendre series at points x.
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624
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+
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622
625
|
If `c` is of length `n + 1`, this function returns the value:
|
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623
626
|
.. math:: p(x) = c_0 * L_0(x) + c_1 * L_1(x) + ... + c_n * L_n(x)
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|
The parameter `x` is converted to an array only if it is a tuple or a
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@@ -804,12 +807,6 @@ def _torch_make_interpolation_matrix(
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804
807
|
The interpolation matrix that maps good signals to the location
|
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805
808
|
of bad signals.
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806
809
|
|
|
807
|
-
References
|
|
808
|
-
----------
|
|
809
|
-
[1] Perrin, F., Pernier, J., Bertrand, O. and Echallier, JF. (1989).
|
|
810
|
-
Spherical splines for scalp potential and current density mapping.
|
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811
|
-
Electroencephalography Clinical Neurophysiology, Feb; 72(2):184-7.
|
|
812
|
-
|
|
813
810
|
Notes
|
|
814
811
|
-----
|
|
815
812
|
Code copied and modified from MNE-Python:
|
|
@@ -840,6 +837,12 @@ def _torch_make_interpolation_matrix(
|
|
|
840
837
|
LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
|
|
841
838
|
OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
|
|
842
839
|
DAMAGE.
|
|
840
|
+
|
|
841
|
+
References
|
|
842
|
+
----------
|
|
843
|
+
[1] Perrin, F., Pernier, J., Bertrand, O. and Echallier, JF. (1989).
|
|
844
|
+
Spherical splines for scalp potential and current density mapping.
|
|
845
|
+
Electroencephalography Clinical Neurophysiology, Feb; 72(2):184-7.
|
|
843
846
|
"""
|
|
844
847
|
pos_from = pos_from.clone()
|
|
845
848
|
pos_to = pos_to.clone()
|
|
@@ -967,7 +970,8 @@ def sensors_rotation(
|
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967
970
|
angles: npt.ArrayLike,
|
|
968
971
|
spherical_splines: bool,
|
|
969
972
|
) -> tuple[torch.Tensor, torch.Tensor]:
|
|
970
|
-
"""Interpolates EEG signals over sensors rotated around the desired axis
|
|
973
|
+
"""Interpolates EEG signals over sensors rotated around the desired axis.
|
|
974
|
+
|
|
971
975
|
with the desired angle.
|
|
972
976
|
|
|
973
977
|
Suggested in [1]_
|
|
@@ -1026,7 +1030,7 @@ def mixup(
|
|
|
1026
1030
|
lam : torch.Tensor
|
|
1027
1031
|
Values between 0 and 1 setting the linear interpolation between
|
|
1028
1032
|
examples.
|
|
1029
|
-
idx_perm: torch.Tensor
|
|
1033
|
+
idx_perm : torch.Tensor
|
|
1030
1034
|
Permuted indices of example that are mixed into original examples.
|
|
1031
1035
|
|
|
1032
1036
|
Returns
|
|
@@ -1079,18 +1083,20 @@ def segmentation_reconstruction(
|
|
|
1079
1083
|
EEG labels for the example or batch.
|
|
1080
1084
|
n_segments : int
|
|
1081
1085
|
Number of segments to use in the batch.
|
|
1082
|
-
data_classes: list[tuple[int, torch.Tensor]]
|
|
1086
|
+
data_classes : list[tuple[int, torch.Tensor]]
|
|
1083
1087
|
List of tuples. Each tuple contains the class index and the corresponding EEG data.
|
|
1084
|
-
rand_indices: array-like
|
|
1088
|
+
rand_indices : array-like
|
|
1085
1089
|
Array of indices that indicates which trial to use in each segment.
|
|
1086
|
-
idx_shuffle: array-like
|
|
1090
|
+
idx_shuffle : array-like
|
|
1087
1091
|
Array of indices to shuffle the new generated trials.
|
|
1092
|
+
|
|
1088
1093
|
Returns
|
|
1089
1094
|
-------
|
|
1090
1095
|
torch.Tensor
|
|
1091
1096
|
Transformed inputs.
|
|
1092
1097
|
torch.Tensor
|
|
1093
1098
|
Transformed labels.
|
|
1099
|
+
|
|
1094
1100
|
References
|
|
1095
1101
|
----------
|
|
1096
1102
|
.. [1] Lotte, F. (2015). Signal processing approaches to minimize or
|
|
@@ -1144,7 +1150,7 @@ def mask_encoding(
|
|
|
1144
1150
|
segment_length: int,
|
|
1145
1151
|
n_segments: int,
|
|
1146
1152
|
) -> tuple[torch.Tensor, torch.Tensor]:
|
|
1147
|
-
"""Mark encoding from Ding et al
|
|
1153
|
+
"""Mark encoding from Ding et al (2024) from [ding2024]_.
|
|
1148
1154
|
|
|
1149
1155
|
Replaces a contiguous part (or parts) of all channels by zeros
|
|
1150
1156
|
(if more than one segment, it may overlap).
|
|
@@ -1194,3 +1200,101 @@ def mask_encoding(
|
|
|
1194
1200
|
X[mask] = 0
|
|
1195
1201
|
|
|
1196
1202
|
return X, y # Return the masked tensor and labels
|
|
1203
|
+
|
|
1204
|
+
|
|
1205
|
+
def channels_rereference(
|
|
1206
|
+
X: torch.Tensor,
|
|
1207
|
+
y: torch.Tensor,
|
|
1208
|
+
random_state: int | np.random.RandomState | None = None,
|
|
1209
|
+
) -> tuple[torch.Tensor, torch.Tensor]:
|
|
1210
|
+
"""Randomly re-reference channels in EEG data matrix.
|
|
1211
|
+
|
|
1212
|
+
Part of the augmentations proposed in [1]_
|
|
1213
|
+
|
|
1214
|
+
Parameters
|
|
1215
|
+
----------
|
|
1216
|
+
X : torch.Tensor
|
|
1217
|
+
EEG input example or batch.
|
|
1218
|
+
y : torch.Tensor
|
|
1219
|
+
EEG labels for the example or batch.
|
|
1220
|
+
random_state : int | numpy.random.Generator, optional
|
|
1221
|
+
Seed to be used to instantiate numpy random number generator instance.
|
|
1222
|
+
Defaults to None.
|
|
1223
|
+
|
|
1224
|
+
Returns
|
|
1225
|
+
-------
|
|
1226
|
+
torch.Tensor
|
|
1227
|
+
Transformed inputs.
|
|
1228
|
+
torch.Tensor
|
|
1229
|
+
Transformed labels.
|
|
1230
|
+
|
|
1231
|
+
References
|
|
1232
|
+
----------
|
|
1233
|
+
.. [1] Mohsenvand, M.N., Izadi, M.R. & Maes, P.. (2020). Contrastive
|
|
1234
|
+
Representation Learning for Electroencephalogram Classification. Proceedings
|
|
1235
|
+
of the Machine Learning for Health NeurIPS Workshop, in Proceedings of Machine
|
|
1236
|
+
Learning Research 136:238-253
|
|
1237
|
+
"""
|
|
1238
|
+
|
|
1239
|
+
rng = check_random_state(random_state)
|
|
1240
|
+
batch_size, n_channels, _ = X.shape
|
|
1241
|
+
|
|
1242
|
+
ch = rng.randint(0, n_channels, size=batch_size)
|
|
1243
|
+
|
|
1244
|
+
X_ch = X[torch.arange(batch_size), ch, :]
|
|
1245
|
+
X = X - X_ch.unsqueeze(1)
|
|
1246
|
+
X[torch.arange(batch_size), ch, :] = -X_ch
|
|
1247
|
+
|
|
1248
|
+
return X, y
|
|
1249
|
+
|
|
1250
|
+
|
|
1251
|
+
def amplitude_scale(
|
|
1252
|
+
X: torch.Tensor,
|
|
1253
|
+
y: torch.Tensor,
|
|
1254
|
+
scale: tuple,
|
|
1255
|
+
random_state: int | np.random.RandomState | None = None,
|
|
1256
|
+
) -> tuple[torch.Tensor, torch.Tensor]:
|
|
1257
|
+
"""Rescale amplitude of each channel based on a random sampled scaling value.
|
|
1258
|
+
|
|
1259
|
+
Part of the augmentations proposed in [1]_
|
|
1260
|
+
|
|
1261
|
+
Parameters
|
|
1262
|
+
----------
|
|
1263
|
+
X : torch.Tensor
|
|
1264
|
+
EEG input example or batch.
|
|
1265
|
+
y : torch.Tensor
|
|
1266
|
+
EEG labels for the example or batch.
|
|
1267
|
+
scale : tuple of floats
|
|
1268
|
+
Interval from which ypu sample the scaling value
|
|
1269
|
+
random_state : int | numpy.random.Generator, optional
|
|
1270
|
+
Seed to be used to instantiate numpy random number generator instance.
|
|
1271
|
+
Defaults to None.
|
|
1272
|
+
|
|
1273
|
+
Returns
|
|
1274
|
+
-------
|
|
1275
|
+
torch.Tensor
|
|
1276
|
+
Transformed inputs.
|
|
1277
|
+
torch.Tensor
|
|
1278
|
+
Transformed labels.
|
|
1279
|
+
|
|
1280
|
+
References
|
|
1281
|
+
----------
|
|
1282
|
+
.. [1] Mohsenvand, M.N., Izadi, M.R. & Maes, P.. (2020). Contrastive
|
|
1283
|
+
Representation Learning for Electroencephalogram Classification. Proceedings
|
|
1284
|
+
of the Machine Learning for Health NeurIPS Workshop, in Proceedings of Machine
|
|
1285
|
+
Learning Research 136:238-253
|
|
1286
|
+
"""
|
|
1287
|
+
|
|
1288
|
+
rng = torch.Generator()
|
|
1289
|
+
rng.manual_seed(random_state)
|
|
1290
|
+
batch_size, n_channels, _ = X.shape
|
|
1291
|
+
|
|
1292
|
+
# Parameter for scaling amplitude / channel / trial
|
|
1293
|
+
l, h = scale
|
|
1294
|
+
s = l + (h - l) * torch.rand(
|
|
1295
|
+
batch_size, n_channels, 1, generator=rng, device=X.device, dtype=X.dtype
|
|
1296
|
+
)
|
|
1297
|
+
|
|
1298
|
+
X = s * X
|
|
1299
|
+
|
|
1300
|
+
return X, y
|