Braindecode 1.3.0.dev184419601__tar.gz → 1.3.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (704) hide show
  1. braindecode-1.3.1/PKG-INFO +230 -0
  2. braindecode-1.3.1/README.rst +146 -0
  3. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/augmentation/__init__.py +5 -3
  4. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/augmentation/base.py +8 -5
  5. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/augmentation/functional.py +122 -18
  6. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/augmentation/transforms.py +117 -34
  7. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/classifier.py +11 -16
  8. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/__init__.py +5 -3
  9. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/base.py +34 -15
  10. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/bbci.py +13 -14
  11. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/bcicomp.py +4 -5
  12. braindecode-1.3.1/braindecode/datasets/bids/__init__.py +54 -0
  13. braindecode-1.3.0.dev184419601/braindecode/datasets/bids.py → braindecode-1.3.1/braindecode/datasets/bids/datasets.py +12 -18
  14. braindecode-1.3.1/braindecode/datasets/bids/format.py +717 -0
  15. braindecode-1.3.1/braindecode/datasets/bids/hub.py +987 -0
  16. braindecode-1.3.1/braindecode/datasets/bids/hub_format.py +810 -0
  17. braindecode-1.3.1/braindecode/datasets/bids/hub_io.py +197 -0
  18. braindecode-1.3.1/braindecode/datasets/bids/hub_validation.py +114 -0
  19. braindecode-1.3.0.dev184419601/braindecode/datasets/experimental.py → braindecode-1.3.1/braindecode/datasets/bids/iterable.py +8 -6
  20. braindecode-1.3.1/braindecode/datasets/chb_mit.py +163 -0
  21. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/mne.py +19 -19
  22. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/moabb.py +10 -10
  23. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/nmt.py +58 -56
  24. braindecode-1.3.1/braindecode/datasets/registry.py +120 -0
  25. braindecode-1.3.1/braindecode/datasets/siena.py +162 -0
  26. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/sleep_physio_challe_18.py +3 -5
  27. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/sleep_physionet.py +5 -5
  28. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/tuh.py +21 -18
  29. braindecode-1.3.1/braindecode/datasets/utils.py +67 -0
  30. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datasets/xy.py +10 -9
  31. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datautil/__init__.py +3 -3
  32. braindecode-1.3.1/braindecode/datautil/hub_formats.py +180 -0
  33. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/datautil/serialization.py +22 -21
  34. braindecode-1.3.1/braindecode/datautil/util.py +154 -0
  35. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/eegneuralnet.py +22 -52
  36. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/functional/functions.py +7 -10
  37. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/functional/initialization.py +3 -2
  38. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/__init__.py +15 -4
  39. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/atcnet.py +43 -39
  40. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/attentionbasenet.py +37 -41
  41. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/attn_sleep.py +26 -24
  42. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/base.py +6 -6
  43. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/bendr.py +50 -26
  44. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/biot.py +61 -30
  45. braindecode-1.3.1/braindecode/models/brainmodule.py +845 -0
  46. braindecode-1.3.1/braindecode/models/config.py +233 -0
  47. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/contrawr.py +5 -5
  48. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/ctnet.py +35 -35
  49. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/deep4.py +5 -5
  50. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/deepsleepnet.py +7 -7
  51. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegconformer.py +31 -26
  52. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eeginception_erp.py +2 -2
  53. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eeginception_mi.py +6 -6
  54. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegitnet.py +5 -5
  55. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegminer.py +1 -1
  56. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegnet.py +3 -3
  57. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegnex.py +2 -2
  58. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegsimpleconv.py +2 -2
  59. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegsym.py +7 -7
  60. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/eegtcnet.py +6 -6
  61. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/fbcnet.py +2 -2
  62. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/fblightconvnet.py +3 -3
  63. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/fbmsnet.py +3 -3
  64. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/hybrid.py +2 -2
  65. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/ifnet.py +5 -5
  66. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/labram.py +70 -46
  67. braindecode-1.3.1/braindecode/models/luna.py +891 -0
  68. braindecode-1.3.1/braindecode/models/medformer.py +760 -0
  69. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/msvtnet.py +15 -15
  70. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/patchedtransformer.py +55 -55
  71. braindecode-1.3.1/braindecode/models/reve.py +843 -0
  72. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/sccnet.py +2 -2
  73. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/shallow_fbcsp.py +5 -3
  74. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/signal_jepa.py +39 -12
  75. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/sinc_shallow.py +3 -4
  76. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/sleep_stager_blanco_2020.py +2 -2
  77. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/sleep_stager_chambon_2018.py +2 -2
  78. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/sparcnet.py +8 -8
  79. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/sstdpn.py +869 -869
  80. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/summary.csv +19 -15
  81. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/syncnet.py +2 -2
  82. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/tcn.py +5 -5
  83. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/tidnet.py +3 -3
  84. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/tsinception.py +3 -3
  85. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/models/usleep.py +7 -7
  86. braindecode-1.3.1/braindecode/models/util.py +369 -0
  87. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/__init__.py +9 -1
  88. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/activation.py +29 -3
  89. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/attention.py +123 -0
  90. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/blocks.py +53 -1
  91. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/convolution.py +53 -0
  92. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/filter.py +31 -0
  93. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/layers.py +84 -0
  94. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/linear.py +22 -1
  95. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/stats.py +10 -0
  96. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/util.py +9 -0
  97. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/modules/wrapper.py +17 -0
  98. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/preprocessing/__init__.py +5 -0
  99. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/preprocessing/eegprep_preprocess.py +134 -19
  100. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/preprocessing/mne_preprocess.py +56 -25
  101. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/preprocessing/preprocess.py +129 -41
  102. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/preprocessing/util.py +11 -0
  103. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/regressor.py +15 -18
  104. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/samplers/ssl.py +1 -1
  105. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode/util.py +38 -28
  106. braindecode-1.3.1/braindecode/version.py +1 -0
  107. braindecode-1.3.1/braindecode.egg-info/PKG-INFO +230 -0
  108. braindecode-1.3.1/braindecode.egg-info/SOURCES.txt +675 -0
  109. {braindecode-1.3.0.dev184419601 → braindecode-1.3.1}/braindecode.egg-info/requires.txt +26 -16
  110. braindecode-1.3.1/docs/_build/html/_downloads/090305d06248840b75133975e5121f41/plot_sleep_staging_chambon2018.ipynb +291 -0
  111. braindecode-1.3.1/docs/_build/html/_downloads/0ada35f18bb95235ba2842270483081f/plot_finetune_foundation_model.ipynb +237 -0
  112. braindecode-1.3.1/docs/_build/html/_downloads/0f2bf063e08b7d05b80e0004fcbbb6f9/benchmark_lazy_eager_loading.ipynb +183 -0
  113. braindecode-1.3.1/docs/_build/html/_downloads/137d0b161de96c88644fd65258fc20b5/tutorial_create_fixed_window_length.ipynb +190 -0
  114. braindecode-1.3.1/docs/_build/html/_downloads/1c6590d134fa0befda654e89aa55b2ac/plot_benchmark_preprocessing.ipynb +104 -0
  115. braindecode-1.3.1/docs/_build/html/_downloads/1d879df548fa18be8c23d9ca0dc008d4/plot_data_augmentation.ipynb +259 -0
  116. braindecode-1.3.1/docs/_build/html/_downloads/2466f8ec5c733d0bd65e187b45d875cc/plot_data_augmentation_search.ipynb +302 -0
  117. braindecode-1.3.1/docs/_build/html/_downloads/263464a28477cf8decb861ae6e2e9be7/plot_how_train_test_and_tune.ipynb +375 -0
  118. braindecode-1.3.1/docs/_build/html/_downloads/3862cafd7f0d815e434319ffe525afc8/plot_bcic_iv_2a_moabb_cropped.ipynb +226 -0
  119. braindecode-1.3.1/docs/_build/html/_downloads/408ca4ffd0ea1f76faa9ef602734ac94/plot_tuh_eeg_corpus.ipynb +187 -0
  120. braindecode-1.3.1/docs/_build/html/_downloads/5030717acb00990b394b83314b0797d9/plot_bids_dataset_example.ipynb +97 -0
  121. braindecode-1.3.1/docs/_build/html/_downloads/66ea18b3b9cf0802bbd32bb903ab554e/plot_temporal_generalization.ipynb +312 -0
  122. braindecode-1.3.1/docs/_build/html/_downloads/75a73c7d94f3a671fd3dec28f4031ead/plot_regression.ipynb +212 -0
  123. braindecode-1.3.1/docs/_build/html/_downloads/84fbcd59a346e5e56758285122dc69e2/plot_sleep_staging_eldele2021.ipynb +291 -0
  124. braindecode-1.3.1/docs/_build/html/_downloads/8616a7f968141825e56ab3e3d59be449/plot_tuh_discrete_multitarget.ipynb +169 -0
  125. braindecode-1.3.1/docs/_build/html/_downloads/8b5ba06718764b959e8dea1dd0bb97df/plot_sleep_staging_usleep.ipynb +255 -0
  126. braindecode-1.3.1/docs/_build/html/_downloads/91651c9d4fde110b4a53f5775a91acc5/plot_mne_dataset_example.ipynb +104 -0
  127. braindecode-1.3.1/docs/_build/html/_downloads/93fdea8cbadaf0e3afa2eb2be3ebc483/bcic_iv_4_ecog_trial.ipynb +376 -0
  128. braindecode-1.3.1/docs/_build/html/_downloads/9a4447462c3b255ba7e5ca212bbadd52/plot_bcic_iv_2a_moabb_trial.ipynb +271 -0
  129. braindecode-1.3.1/docs/_build/html/_downloads/9ecad1eb1db853df0ba20dbb97303c02/plot_exca_config.ipynb +439 -0
  130. braindecode-1.3.1/docs/_build/html/_downloads/a2f12129facb042643a99d4b9de1886d/bcic_iv_4_ecog_cropped.ipynb +345 -0
  131. braindecode-1.3.1/docs/_build/html/_downloads/a39e4245738e55e0eb7084c545ed05bc/plot_hyperparameter_tuning_with_scikit-learn.ipynb +257 -0
  132. braindecode-1.3.1/docs/_build/html/_downloads/a6249715d3c30cb41c4af85938cca008/plot_moabb_dataset_example.ipynb +140 -0
  133. braindecode-1.3.1/docs/_build/html/_downloads/a868f9d41de95f5f6defc26e291cf4aa/plot_preprocessing_classes.ipynb +194 -0
  134. braindecode-1.3.1/docs/_build/html/_downloads/a86d0c5f3a882a069df1683a708d3e25/plot_train_in_pure_pytorch_and_pytorch_lightning.ipynb +250 -0
  135. braindecode-1.3.1/docs/_build/html/_downloads/aa8426d97090e7b3062c4e4732c3214a/plot_relative_positioning.ipynb +266 -0
  136. braindecode-1.3.1/docs/_build/html/_downloads/b9d19304ecd233ea7a79d4365316ea49/plot_load_save_datasets.ipynb +176 -0
  137. braindecode-1.3.1/docs/_build/html/_downloads/cb62940d13f700ed2b9e813705e9d437/plot_moabb_benchmark.ipynb +122 -0
  138. braindecode-1.3.1/docs/_build/html/_downloads/cd24c95e5e6c988ebb6ece50ac672ab5/plot_bcic_iv_2a_eegprep_cleaning.ipynb +260 -0
  139. braindecode-1.3.1/docs/_build/html/_downloads/f158ead3e4720f6f4685ff1d3f48dc15/plot_hub_integration.ipynb +201 -0
  140. braindecode-1.3.1/docs/_build/html/_downloads/f3c89d39e947a121c7920b4d415413a2/plot_split_dataset.ipynb +180 -0
  141. braindecode-1.3.1/docs/_build/html/_downloads/f7b38cac92c078838442753121efc297/plot_custom_dataset_example.ipynb +140 -0
  142. braindecode-1.3.1/docs/_build/html/_downloads/fff46913db5173d3ae22c1113acffb45/plot_basic_training_epochs.ipynb +237 -0
  143. braindecode-1.3.1/docs/_templates/autosummary/class_in_subdir.rst +37 -0
  144. braindecode-1.3.1/docs/_templates/autosummary/function_in_subdir.rst +12 -0
  145. braindecode-1.3.1/docs/api.rst +798 -0
  146. braindecode-1.3.1/docs/auto_examples/advanced_training/bcic_iv_4_ecog_cropped.ipynb +345 -0
  147. braindecode-1.3.1/docs/auto_examples/advanced_training/bcic_iv_4_ecog_cropped.rst +626 -0
  148. braindecode-1.3.1/docs/auto_examples/advanced_training/index.rst +173 -0
  149. braindecode-1.3.1/docs/auto_examples/advanced_training/plot_data_augmentation.ipynb +259 -0
  150. braindecode-1.3.1/docs/auto_examples/advanced_training/plot_data_augmentation.rst +419 -0
  151. braindecode-1.3.1/docs/auto_examples/advanced_training/plot_data_augmentation_search.ipynb +302 -0
  152. braindecode-1.3.1/docs/auto_examples/advanced_training/plot_data_augmentation_search.rst +523 -0
  153. braindecode-1.3.1/docs/auto_examples/advanced_training/plot_exca_config.ipynb +439 -0
  154. braindecode-1.3.1/docs/auto_examples/advanced_training/plot_exca_config.rst +693 -0
  155. braindecode-1.3.1/docs/auto_examples/advanced_training/plot_finetune_foundation_model.ipynb +237 -0
  156. braindecode-1.3.1/docs/auto_examples/advanced_training/plot_finetune_foundation_model.rst +420 -0
  157. braindecode-1.3.1/docs/auto_examples/advanced_training/plot_moabb_benchmark.ipynb +122 -0
  158. braindecode-1.3.1/docs/auto_examples/advanced_training/plot_moabb_benchmark.rst +231 -0
  159. braindecode-1.3.1/docs/auto_examples/advanced_training/plot_relative_positioning.ipynb +266 -0
  160. braindecode-1.3.1/docs/auto_examples/advanced_training/plot_relative_positioning.rst +689 -0
  161. braindecode-1.3.1/docs/auto_examples/advanced_training/plot_temporal_generalization.ipynb +312 -0
  162. braindecode-1.3.1/docs/auto_examples/advanced_training/plot_temporal_generalization.rst +807 -0
  163. braindecode-1.3.1/docs/auto_examples/advanced_training/sg_execution_times.rst +58 -0
  164. braindecode-1.3.1/docs/auto_examples/applied_examples/bcic_iv_4_ecog_trial.ipynb +376 -0
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  612. braindecode-1.3.1/docs/moabb/docs/source/generated/moabb.paradigms.ssvep.BaseSSVEP.rst +6 -0
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  631. braindecode-1.3.1/docs/moabb/examples/advanced_examples/readme.rst +13 -0
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+ Metadata-Version: 2.4
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+ Name: braindecode
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+ Version: 1.3.1
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+ Summary: Deep learning software to decode EEG, ECG or MEG signals
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+ Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Alexandre Gramfort <agramfort@meta.com>
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+ Maintainer-email: Alexandre Gramfort <agramfort@meta.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Robin Tibor Schirrmeister <robintibor@gmail.com>
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+ License: BSD-3-Clause
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+ Project-URL: homepage, https://braindecode.org
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+ Project-URL: repository, https://github.com/braindecode/braindecode
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+ Project-URL: documentation, https://braindecode.org/stable/index.html
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+ Keywords: python,deep-learning,neuroscience,pytorch,meg,eeg,neuroimaging,electroencephalography,magnetoencephalography,electrocorticography,ecog,electroencephalogram
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+ Classifier: Development Status :: 3 - Alpha
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+ Classifier: Intended Audience :: Developers
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+ Classifier: Intended Audience :: Science/Research
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+ Classifier: Topic :: Software Development :: Build Tools
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+ Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
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+ Classifier: Programming Language :: Python :: 3.11
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+ Classifier: Programming Language :: Python :: 3.12
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+ Classifier: Programming Language :: Python :: 3.13
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+ Classifier: Programming Language :: Python :: 3.14
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+ Requires-Python: >=3.11
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+ Description-Content-Type: text/x-rst
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+ License-File: LICENSE.txt
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+ License-File: NOTICE.txt
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+ Requires-Dist: torch>=2.2
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+ Requires-Dist: torchaudio>=2.0
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+ Requires-Dist: mne>=1.11.0
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+ Requires-Dist: mne_bids>=0.18
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+ Requires-Dist: h5py
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+ Requires-Dist: skorch>=1.3.0
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+ Requires-Dist: joblib
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+ Requires-Dist: torchinfo
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+ Requires-Dist: wfdb
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+ Requires-Dist: linear_attention_transformer
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+ Requires-Dist: docstring_inheritance
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+ Requires-Dist: rotary_embedding_torch
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+ Provides-Extra: moabb
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+ Requires-Dist: moabb>=1.4.3; extra == "moabb"
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+ Provides-Extra: eegprep
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+ Requires-Dist: eegprep[eeglabio]>=0.2.23; extra == "eegprep"
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+ Provides-Extra: hub
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+ Requires-Dist: huggingface_hub[torch]>=0.20.0; extra == "hub"
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+ Requires-Dist: zarr>=3.0; extra == "hub"
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+ Provides-Extra: tests
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+ Requires-Dist: pytest; extra == "tests"
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+ Requires-Dist: pytest-cov; extra == "tests"
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+ Requires-Dist: codecov; extra == "tests"
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+ Requires-Dist: pytest_cases; extra == "tests"
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+ Requires-Dist: mypy; extra == "tests"
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+ Requires-Dist: transformers>=4.57.0; extra == "tests"
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+ Requires-Dist: bids_validator; extra == "tests"
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+ Provides-Extra: typing
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+ Requires-Dist: exca==0.4; extra == "typing"
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+ Requires-Dist: numpydantic>=1.7; extra == "typing"
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+ Provides-Extra: docs
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+ Requires-Dist: sphinx_gallery; extra == "docs"
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+ Requires-Dist: sphinx_rtd_theme; extra == "docs"
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+ Requires-Dist: sphinx-autodoc-typehints; extra == "docs"
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+ Requires-Dist: sphinx-autobuild; extra == "docs"
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+ Requires-Dist: sphinxcontrib-bibtex; extra == "docs"
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+ Requires-Dist: sphinx_sitemap; extra == "docs"
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+ Requires-Dist: pydata_sphinx_theme; extra == "docs"
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+ Requires-Dist: numpydoc; extra == "docs"
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+ Requires-Dist: memory_profiler; extra == "docs"
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+ Requires-Dist: pillow; extra == "docs"
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+ Requires-Dist: ipython; extra == "docs"
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+ Requires-Dist: sphinx_design; extra == "docs"
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+ Requires-Dist: lightning; extra == "docs"
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+ Requires-Dist: seaborn; extra == "docs"
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+ Requires-Dist: pre-commit; extra == "docs"
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+ Requires-Dist: openneuro-py; extra == "docs"
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+ Requires-Dist: plotly; extra == "docs"
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+ Requires-Dist: shap; extra == "docs"
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+ Requires-Dist: nbformat; extra == "docs"
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+ Requires-Dist: transformers; extra == "docs"
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+ Provides-Extra: all
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+ Requires-Dist: braindecode[moabb]; extra == "all"
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+ Requires-Dist: braindecode[tests]; extra == "all"
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+ Requires-Dist: braindecode[docs]; extra == "all"
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+ Requires-Dist: braindecode[hub]; extra == "all"
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+ Requires-Dist: braindecode[eegprep]; extra == "all"
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+ Requires-Dist: braindecode[typing]; extra == "all"
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+ Dynamic: license-file
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+
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+ .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.8214376.svg
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+ :target: https://doi.org/10.5281/zenodo.8214376
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+ :alt: DOI
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+
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+ .. image:: https://github.com/braindecode/braindecode/workflows/docs/badge.svg
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+ :target: https://github.com/braindecode/braindecode/actions/workflows/docs.yml
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+ :alt: Docs Build Status
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+
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+ .. image:: https://github.com/braindecode/braindecode/workflows/tests/badge.svg
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+ :target: https://github.com/braindecode/braindecode/actions/workflows/tests.yml
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+ :alt: Test Build Status
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+
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+ .. image:: https://codecov.io/gh/braindecode/braindecode/branch/master/graph/badge.svg
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+ :target: https://codecov.io/gh/braindecode/braindecode
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+ :alt: Code Coverage
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+
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+ .. image:: https://img.shields.io/pypi/v/braindecode?color=blue&style=flat-square
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+ :target: https://pypi.org/project/braindecode/
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+ :alt: PyPI
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+
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+ .. image:: https://img.shields.io/pypi/v/braindecode?label=version&color=orange&style=flat-square
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+ :target: https://pypi.org/project/braindecode/
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+ :alt: Version
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+
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+ .. image:: https://img.shields.io/pypi/pyversions/braindecode?style=flat-square
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+ :target: https://pypi.org/project/braindecode/
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+ :alt: Python versions
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+
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+ .. image:: https://pepy.tech/badge/braindecode
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+ :target: https://pepy.tech/project/braindecode
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+ :alt: Downloads
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+
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+ .. |Braindecode| image:: https://user-images.githubusercontent.com/42702466/177958779-b00628aa-9155-4c51-96d1-d8c345aff575.svg
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+
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+ .. _braindecode: braindecode.org/
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+
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+ #############
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+ Braindecode
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+ #############
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+
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+ Braindecode is an open-source Python toolbox for decoding raw electrophysiological brain
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+ data with deep learning models. It includes dataset fetchers, data preprocessing and
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+ visualization tools, as well as implementations of several deep learning architectures
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+ and data augmentations for analysis of EEG, ECoG and MEG.
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+
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+ For neuroscientists who want to work with deep learning and deep learning researchers
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+ who want to work with neurophysiological data.
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+
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+ ##########################
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+ Installation Braindecode
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+ ##########################
136
+
137
+ 1. Install pytorch from http://pytorch.org/ (you don't need to install torchvision).
138
+ 2. If you want to download EEG datasets from `MOABB
139
+ <https://github.com/NeuroTechX/moabb>`_, install it:
140
+
141
+ .. code-block:: bash
142
+
143
+ pip install moabb
144
+
145
+ 3. Install latest release of braindecode via pip:
146
+
147
+ .. code-block:: bash
148
+
149
+ pip install braindecode
150
+
151
+ If you want to install the latest development version of braindecode, please refer to
152
+ `contributing page
153
+ <https://github.com/braindecode/braindecode/blob/master/CONTRIBUTING.md>`__
154
+
155
+ ###############
156
+ Documentation
157
+ ###############
158
+
159
+ Documentation is online under https://braindecode.org, both in the stable and dev
160
+ versions.
161
+
162
+ #############################
163
+ Contributing to Braindecode
164
+ #############################
165
+
166
+ Guidelines for contributing to the library can be found on the braindecode github:
167
+
168
+ https://github.com/braindecode/braindecode/blob/master/CONTRIBUTING.md
169
+
170
+ ########
171
+ Citing
172
+ ########
173
+
174
+ If you use Braindecode in scientific work, please cite the software using the Zenodo DOI
175
+ shown in the badge below:
176
+
177
+ .. image:: https://zenodo.org/badge/232335424.svg
178
+ :target: https://doi.org/10.5281/zenodo.8214376
179
+ :alt: DOI
180
+
181
+ Additionally, we highly encourage you to cite the article that originally introduced the
182
+ Braindecode library and has served as a foundational reference for many works on deep
183
+ learning with EEG recordings. Please use the following reference:
184
+
185
+ .. code-block:: bibtex
186
+
187
+ @article {HBM:HBM23730,
188
+ author = {Schirrmeister, Robin Tibor and Springenberg, Jost Tobias and Fiederer,
189
+ Lukas Dominique Josef and Glasstetter, Martin and Eggensperger, Katharina and Tangermann, Michael and
190
+ Hutter, Frank and Burgard, Wolfram and Ball, Tonio},
191
+ title = {Deep learning with convolutional neural networks for EEG decoding and visualization},
192
+ journal = {Human Brain Mapping},
193
+ issn = {1097-0193},
194
+ url = {http://dx.doi.org/10.1002/hbm.23730},
195
+ doi = {10.1002/hbm.23730},
196
+ month = {aug},
197
+ year = {2017},
198
+ keywords = {electroencephalography, EEG analysis, machine learning, end-to-end learning, brain–machine interface,
199
+ brain–computer interface, model interpretability, brain mapping},
200
+ }
201
+
202
+ as well as the `MNE-Python <https://mne.tools>`_ software that is used by braindecode:
203
+
204
+ .. code-block:: bibtex
205
+
206
+ @article{10.3389/fnins.2013.00267,
207
+ author={Gramfort, Alexandre and Luessi, Martin and Larson, Eric and Engemann, Denis and Strohmeier, Daniel and Brodbeck, Christian and Goj, Roman and Jas, Mainak and Brooks, Teon and Parkkonen, Lauri and Hämäläinen, Matti},
208
+ title={{MEG and EEG data analysis with MNE-Python}},
209
+ journal={Frontiers in Neuroscience},
210
+ volume={7},
211
+ pages={267},
212
+ year={2013},
213
+ url={https://www.frontiersin.org/article/10.3389/fnins.2013.00267},
214
+ doi={10.3389/fnins.2013.00267},
215
+ issn={1662-453X},
216
+ }
217
+
218
+ ***********
219
+ Licensing
220
+ ***********
221
+
222
+ This project is primarily licensed under the BSD-3-Clause License.
223
+
224
+ Additional Components
225
+ =====================
226
+
227
+ Some components within this repository are licensed under the Creative Commons
228
+ Attribution-NonCommercial 4.0 International License.
229
+
230
+ Please refer to the ``LICENSE`` and ``NOTICE`` files for more detailed information.
@@ -0,0 +1,146 @@
1
+ .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.8214376.svg
2
+ :target: https://doi.org/10.5281/zenodo.8214376
3
+ :alt: DOI
4
+
5
+ .. image:: https://github.com/braindecode/braindecode/workflows/docs/badge.svg
6
+ :target: https://github.com/braindecode/braindecode/actions/workflows/docs.yml
7
+ :alt: Docs Build Status
8
+
9
+ .. image:: https://github.com/braindecode/braindecode/workflows/tests/badge.svg
10
+ :target: https://github.com/braindecode/braindecode/actions/workflows/tests.yml
11
+ :alt: Test Build Status
12
+
13
+ .. image:: https://codecov.io/gh/braindecode/braindecode/branch/master/graph/badge.svg
14
+ :target: https://codecov.io/gh/braindecode/braindecode
15
+ :alt: Code Coverage
16
+
17
+ .. image:: https://img.shields.io/pypi/v/braindecode?color=blue&style=flat-square
18
+ :target: https://pypi.org/project/braindecode/
19
+ :alt: PyPI
20
+
21
+ .. image:: https://img.shields.io/pypi/v/braindecode?label=version&color=orange&style=flat-square
22
+ :target: https://pypi.org/project/braindecode/
23
+ :alt: Version
24
+
25
+ .. image:: https://img.shields.io/pypi/pyversions/braindecode?style=flat-square
26
+ :target: https://pypi.org/project/braindecode/
27
+ :alt: Python versions
28
+
29
+ .. image:: https://pepy.tech/badge/braindecode
30
+ :target: https://pepy.tech/project/braindecode
31
+ :alt: Downloads
32
+
33
+ .. |Braindecode| image:: https://user-images.githubusercontent.com/42702466/177958779-b00628aa-9155-4c51-96d1-d8c345aff575.svg
34
+
35
+ .. _braindecode: braindecode.org/
36
+
37
+ #############
38
+ Braindecode
39
+ #############
40
+
41
+ Braindecode is an open-source Python toolbox for decoding raw electrophysiological brain
42
+ data with deep learning models. It includes dataset fetchers, data preprocessing and
43
+ visualization tools, as well as implementations of several deep learning architectures
44
+ and data augmentations for analysis of EEG, ECoG and MEG.
45
+
46
+ For neuroscientists who want to work with deep learning and deep learning researchers
47
+ who want to work with neurophysiological data.
48
+
49
+ ##########################
50
+ Installation Braindecode
51
+ ##########################
52
+
53
+ 1. Install pytorch from http://pytorch.org/ (you don't need to install torchvision).
54
+ 2. If you want to download EEG datasets from `MOABB
55
+ <https://github.com/NeuroTechX/moabb>`_, install it:
56
+
57
+ .. code-block:: bash
58
+
59
+ pip install moabb
60
+
61
+ 3. Install latest release of braindecode via pip:
62
+
63
+ .. code-block:: bash
64
+
65
+ pip install braindecode
66
+
67
+ If you want to install the latest development version of braindecode, please refer to
68
+ `contributing page
69
+ <https://github.com/braindecode/braindecode/blob/master/CONTRIBUTING.md>`__
70
+
71
+ ###############
72
+ Documentation
73
+ ###############
74
+
75
+ Documentation is online under https://braindecode.org, both in the stable and dev
76
+ versions.
77
+
78
+ #############################
79
+ Contributing to Braindecode
80
+ #############################
81
+
82
+ Guidelines for contributing to the library can be found on the braindecode github:
83
+
84
+ https://github.com/braindecode/braindecode/blob/master/CONTRIBUTING.md
85
+
86
+ ########
87
+ Citing
88
+ ########
89
+
90
+ If you use Braindecode in scientific work, please cite the software using the Zenodo DOI
91
+ shown in the badge below:
92
+
93
+ .. image:: https://zenodo.org/badge/232335424.svg
94
+ :target: https://doi.org/10.5281/zenodo.8214376
95
+ :alt: DOI
96
+
97
+ Additionally, we highly encourage you to cite the article that originally introduced the
98
+ Braindecode library and has served as a foundational reference for many works on deep
99
+ learning with EEG recordings. Please use the following reference:
100
+
101
+ .. code-block:: bibtex
102
+
103
+ @article {HBM:HBM23730,
104
+ author = {Schirrmeister, Robin Tibor and Springenberg, Jost Tobias and Fiederer,
105
+ Lukas Dominique Josef and Glasstetter, Martin and Eggensperger, Katharina and Tangermann, Michael and
106
+ Hutter, Frank and Burgard, Wolfram and Ball, Tonio},
107
+ title = {Deep learning with convolutional neural networks for EEG decoding and visualization},
108
+ journal = {Human Brain Mapping},
109
+ issn = {1097-0193},
110
+ url = {http://dx.doi.org/10.1002/hbm.23730},
111
+ doi = {10.1002/hbm.23730},
112
+ month = {aug},
113
+ year = {2017},
114
+ keywords = {electroencephalography, EEG analysis, machine learning, end-to-end learning, brain–machine interface,
115
+ brain–computer interface, model interpretability, brain mapping},
116
+ }
117
+
118
+ as well as the `MNE-Python <https://mne.tools>`_ software that is used by braindecode:
119
+
120
+ .. code-block:: bibtex
121
+
122
+ @article{10.3389/fnins.2013.00267,
123
+ author={Gramfort, Alexandre and Luessi, Martin and Larson, Eric and Engemann, Denis and Strohmeier, Daniel and Brodbeck, Christian and Goj, Roman and Jas, Mainak and Brooks, Teon and Parkkonen, Lauri and Hämäläinen, Matti},
124
+ title={{MEG and EEG data analysis with MNE-Python}},
125
+ journal={Frontiers in Neuroscience},
126
+ volume={7},
127
+ pages={267},
128
+ year={2013},
129
+ url={https://www.frontiersin.org/article/10.3389/fnins.2013.00267},
130
+ doi={10.3389/fnins.2013.00267},
131
+ issn={1662-453X},
132
+ }
133
+
134
+ ***********
135
+ Licensing
136
+ ***********
137
+
138
+ This project is primarily licensed under the BSD-3-Clause License.
139
+
140
+ Additional Components
141
+ =====================
142
+
143
+ Some components within this repository are licensed under the Creative Commons
144
+ Attribution-NonCommercial 4.0 International License.
145
+
146
+ Please refer to the ``LICENSE`` and ``NOTICE`` files for more detailed information.
@@ -1,12 +1,12 @@
1
- """
2
- Utilities for data augmentation.
3
- """
1
+ """Utilities for data augmentation."""
4
2
 
5
3
  from . import functional
6
4
  from .base import AugmentedDataLoader, Compose, IdentityTransform, Transform
7
5
  from .transforms import (
6
+ AmplitudeScale,
8
7
  BandstopFilter,
9
8
  ChannelsDropout,
9
+ ChannelsReref,
10
10
  ChannelsShuffle,
11
11
  ChannelsSymmetry,
12
12
  FrequencyShift,
@@ -46,5 +46,7 @@ __all__ = [
46
46
  "Mixup",
47
47
  "SegmentationReconstruction",
48
48
  "MaskEncoding",
49
+ "AmplitudeScale",
50
+ "ChannelsReref",
49
51
  "functional",
50
52
  ]
@@ -31,7 +31,8 @@ Operation = Callable[
31
31
 
32
32
 
33
33
  class Transform(torch.nn.Module):
34
- """Basic transform class used for implementing data augmentation
34
+ """Basic transform class used for implementing data augmentation.
35
+
35
36
  operations.
36
37
 
37
38
  Parameters
@@ -42,7 +43,7 @@ class Transform(torch.nn.Module):
42
43
  probability : float, optional
43
44
  Float between 0 and 1 defining the uniform probability of applying the
44
45
  operation. Set to 1.0 by default (e.g always apply the operation).
45
- random_state: int, optional
46
+ random_state : int, optional
46
47
  Seed to be used to instantiate numpy random number generator instance.
47
48
  Used to decide whether or not to transform given the probability
48
49
  argument. Defaults to None.
@@ -125,7 +126,7 @@ class Transform(torch.nn.Module):
125
126
  return out_X
126
127
 
127
128
  def _get_mask(self, batch_size, device) -> torch.Tensor:
128
- """Samples whether to apply operation or not over the whole batch"""
129
+ """Samples whether to apply operation or not over the whole batch."""
129
130
  return torch.as_tensor(self.probability > self.rng.uniform(size=batch_size)).to(
130
131
  device
131
132
  )
@@ -153,7 +154,7 @@ class Compose(Transform):
153
154
 
154
155
  Parameters
155
156
  ----------
156
- transforms: list
157
+ transforms : list
157
158
  Sequence of Transforms to be composed.
158
159
  """
159
160
 
@@ -169,7 +170,9 @@ class Compose(Transform):
169
170
 
170
171
  def _make_collateable(transform, device=None):
171
172
  """Wraps a transform to make it collateable.
172
- with device control."""
173
+
174
+ with device control.
175
+ """
173
176
 
174
177
  def _collate_fn(batch):
175
178
  collated_batch = default_collate(batch)
@@ -1,6 +1,7 @@
1
1
  # Authors: Cédric Rommel <cedric.rommel@inria.fr>
2
2
  # Alexandre Gramfort <alexandre.gramfort@inria.fr>
3
3
  # Gustavo Rodrigues <gustavenrique01@gmail.com>
4
+ # Bruna Lopes <brunajaflopes@gmail.com>
4
5
  #
5
6
  # License: BSD (3-clause)
6
7
 
@@ -143,7 +144,7 @@ def ft_surrogate(
143
144
  EEG input example or batch.
144
145
  y : torch.Tensor
145
146
  EEG labels for the example or batch.
146
- phase_noise_magnitude: float
147
+ phase_noise_magnitude : float
147
148
  Float between 0 and 1 setting the range over which the phase
148
149
  perturbation is uniformly sampled:
149
150
  [0, `phase_noise_magnitude` * 2 * `pi`].
@@ -151,7 +152,7 @@ def ft_surrogate(
151
152
  Whether to sample phase perturbations independently for each channel or
152
153
  not. It is advised to set it to False when spatial information is
153
154
  important for the task, like in BCI.
154
- random_state: int | numpy.random.Generator, optional
155
+ random_state : int | numpy.random.Generator, optional
155
156
  Used to draw the phase perturbation. Defaults to None.
156
157
 
157
158
  Returns
@@ -288,10 +289,10 @@ def channels_shuffle(
288
289
  EEG input example or batch.
289
290
  y : torch.Tensor
290
291
  EEG labels for the example or batch.
291
- p_shuffle: float | None
292
+ p_shuffle : float | None
292
293
  Float between 0 and 1 setting the probability of including the channel
293
294
  in the set of permutted channels.
294
- random_state: int | numpy.random.Generator, optional
295
+ random_state : int | numpy.random.Generator, optional
295
296
  Seed to be used to instantiate numpy random number generator instance.
296
297
  Used to sample which channels to shuffle and to carry the shuffle.
297
298
  Defaults to None.
@@ -334,7 +335,7 @@ def gaussian_noise(
334
335
  EEG labels for the example or batch.
335
336
  std : float
336
337
  Standard deviation to use for the additive noise.
337
- random_state: int | numpy.random.Generator, optional
338
+ random_state : int | numpy.random.Generator, optional
338
339
  Seed to be used to instantiate numpy random number generator instance.
339
340
  Defaults to None.
340
341
 
@@ -467,7 +468,8 @@ def bandstop_filter(
467
468
  bandwidth: float,
468
469
  freqs_to_notch: npt.ArrayLike | None,
469
470
  ) -> tuple[torch.Tensor, torch.Tensor]:
470
- """Apply a band-stop filter with desired bandwidth at the desired frequency
471
+ """Apply a band-stop filter with desired bandwidth at the desired frequency.
472
+
471
473
  position.
472
474
 
473
475
  Suggested e.g. in [1]_ and [2]_
@@ -619,6 +621,7 @@ def _torch_legval(
619
621
  ) -> torch.Tensor:
620
622
  """
621
623
  Evaluate a Legendre series at points x.
624
+
622
625
  If `c` is of length `n + 1`, this function returns the value:
623
626
  .. math:: p(x) = c_0 * L_0(x) + c_1 * L_1(x) + ... + c_n * L_n(x)
624
627
  The parameter `x` is converted to an array only if it is a tuple or a
@@ -804,12 +807,6 @@ def _torch_make_interpolation_matrix(
804
807
  The interpolation matrix that maps good signals to the location
805
808
  of bad signals.
806
809
 
807
- References
808
- ----------
809
- [1] Perrin, F., Pernier, J., Bertrand, O. and Echallier, JF. (1989).
810
- Spherical splines for scalp potential and current density mapping.
811
- Electroencephalography Clinical Neurophysiology, Feb; 72(2):184-7.
812
-
813
810
  Notes
814
811
  -----
815
812
  Code copied and modified from MNE-Python:
@@ -840,6 +837,12 @@ def _torch_make_interpolation_matrix(
840
837
  LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
841
838
  OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
842
839
  DAMAGE.
840
+
841
+ References
842
+ ----------
843
+ [1] Perrin, F., Pernier, J., Bertrand, O. and Echallier, JF. (1989).
844
+ Spherical splines for scalp potential and current density mapping.
845
+ Electroencephalography Clinical Neurophysiology, Feb; 72(2):184-7.
843
846
  """
844
847
  pos_from = pos_from.clone()
845
848
  pos_to = pos_to.clone()
@@ -967,7 +970,8 @@ def sensors_rotation(
967
970
  angles: npt.ArrayLike,
968
971
  spherical_splines: bool,
969
972
  ) -> tuple[torch.Tensor, torch.Tensor]:
970
- """Interpolates EEG signals over sensors rotated around the desired axis
973
+ """Interpolates EEG signals over sensors rotated around the desired axis.
974
+
971
975
  with the desired angle.
972
976
 
973
977
  Suggested in [1]_
@@ -1026,7 +1030,7 @@ def mixup(
1026
1030
  lam : torch.Tensor
1027
1031
  Values between 0 and 1 setting the linear interpolation between
1028
1032
  examples.
1029
- idx_perm: torch.Tensor
1033
+ idx_perm : torch.Tensor
1030
1034
  Permuted indices of example that are mixed into original examples.
1031
1035
 
1032
1036
  Returns
@@ -1079,18 +1083,20 @@ def segmentation_reconstruction(
1079
1083
  EEG labels for the example or batch.
1080
1084
  n_segments : int
1081
1085
  Number of segments to use in the batch.
1082
- data_classes: list[tuple[int, torch.Tensor]]
1086
+ data_classes : list[tuple[int, torch.Tensor]]
1083
1087
  List of tuples. Each tuple contains the class index and the corresponding EEG data.
1084
- rand_indices: array-like
1088
+ rand_indices : array-like
1085
1089
  Array of indices that indicates which trial to use in each segment.
1086
- idx_shuffle: array-like
1090
+ idx_shuffle : array-like
1087
1091
  Array of indices to shuffle the new generated trials.
1092
+
1088
1093
  Returns
1089
1094
  -------
1090
1095
  torch.Tensor
1091
1096
  Transformed inputs.
1092
1097
  torch.Tensor
1093
1098
  Transformed labels.
1099
+
1094
1100
  References
1095
1101
  ----------
1096
1102
  .. [1] Lotte, F. (2015). Signal processing approaches to minimize or
@@ -1144,7 +1150,7 @@ def mask_encoding(
1144
1150
  segment_length: int,
1145
1151
  n_segments: int,
1146
1152
  ) -> tuple[torch.Tensor, torch.Tensor]:
1147
- """Mark encoding from Ding et al. (2024) from [ding2024]_.
1153
+ """Mark encoding from Ding et al (2024) from [ding2024]_.
1148
1154
 
1149
1155
  Replaces a contiguous part (or parts) of all channels by zeros
1150
1156
  (if more than one segment, it may overlap).
@@ -1194,3 +1200,101 @@ def mask_encoding(
1194
1200
  X[mask] = 0
1195
1201
 
1196
1202
  return X, y # Return the masked tensor and labels
1203
+
1204
+
1205
+ def channels_rereference(
1206
+ X: torch.Tensor,
1207
+ y: torch.Tensor,
1208
+ random_state: int | np.random.RandomState | None = None,
1209
+ ) -> tuple[torch.Tensor, torch.Tensor]:
1210
+ """Randomly re-reference channels in EEG data matrix.
1211
+
1212
+ Part of the augmentations proposed in [1]_
1213
+
1214
+ Parameters
1215
+ ----------
1216
+ X : torch.Tensor
1217
+ EEG input example or batch.
1218
+ y : torch.Tensor
1219
+ EEG labels for the example or batch.
1220
+ random_state : int | numpy.random.Generator, optional
1221
+ Seed to be used to instantiate numpy random number generator instance.
1222
+ Defaults to None.
1223
+
1224
+ Returns
1225
+ -------
1226
+ torch.Tensor
1227
+ Transformed inputs.
1228
+ torch.Tensor
1229
+ Transformed labels.
1230
+
1231
+ References
1232
+ ----------
1233
+ .. [1] Mohsenvand, M.N., Izadi, M.R. &amp; Maes, P.. (2020). Contrastive
1234
+ Representation Learning for Electroencephalogram Classification. Proceedings
1235
+ of the Machine Learning for Health NeurIPS Workshop, in Proceedings of Machine
1236
+ Learning Research 136:238-253
1237
+ """
1238
+
1239
+ rng = check_random_state(random_state)
1240
+ batch_size, n_channels, _ = X.shape
1241
+
1242
+ ch = rng.randint(0, n_channels, size=batch_size)
1243
+
1244
+ X_ch = X[torch.arange(batch_size), ch, :]
1245
+ X = X - X_ch.unsqueeze(1)
1246
+ X[torch.arange(batch_size), ch, :] = -X_ch
1247
+
1248
+ return X, y
1249
+
1250
+
1251
+ def amplitude_scale(
1252
+ X: torch.Tensor,
1253
+ y: torch.Tensor,
1254
+ scale: tuple,
1255
+ random_state: int | np.random.RandomState | None = None,
1256
+ ) -> tuple[torch.Tensor, torch.Tensor]:
1257
+ """Rescale amplitude of each channel based on a random sampled scaling value.
1258
+
1259
+ Part of the augmentations proposed in [1]_
1260
+
1261
+ Parameters
1262
+ ----------
1263
+ X : torch.Tensor
1264
+ EEG input example or batch.
1265
+ y : torch.Tensor
1266
+ EEG labels for the example or batch.
1267
+ scale : tuple of floats
1268
+ Interval from which ypu sample the scaling value
1269
+ random_state : int | numpy.random.Generator, optional
1270
+ Seed to be used to instantiate numpy random number generator instance.
1271
+ Defaults to None.
1272
+
1273
+ Returns
1274
+ -------
1275
+ torch.Tensor
1276
+ Transformed inputs.
1277
+ torch.Tensor
1278
+ Transformed labels.
1279
+
1280
+ References
1281
+ ----------
1282
+ .. [1] Mohsenvand, M.N., Izadi, M.R. &amp; Maes, P.. (2020). Contrastive
1283
+ Representation Learning for Electroencephalogram Classification. Proceedings
1284
+ of the Machine Learning for Health NeurIPS Workshop, in Proceedings of Machine
1285
+ Learning Research 136:238-253
1286
+ """
1287
+
1288
+ rng = torch.Generator()
1289
+ rng.manual_seed(random_state)
1290
+ batch_size, n_channels, _ = X.shape
1291
+
1292
+ # Parameter for scaling amplitude / channel / trial
1293
+ l, h = scale
1294
+ s = l + (h - l) * torch.rand(
1295
+ batch_size, n_channels, 1, generator=rng, device=X.device, dtype=X.dtype
1296
+ )
1297
+
1298
+ X = s * X
1299
+
1300
+ return X, y