Braindecode 1.3.0.dev181594385__tar.gz → 1.3.0.dev182556615__tar.gz

{braindecode-1.3.0.dev181594385/braindecode.egg-info → braindecode-1.3.0.dev182556615}/PKG-INFO

@@ -1,8 +1,8 @@
 Metadata-Version: 2.4
 Name: braindecode
-Version: 1.3.0.dev181594385
+Version: 1.3.0.dev182556615
 Summary: Deep learning software to decode EEG, ECG or MEG signals
-Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>
+Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Alexandre Gramfort <agramfort@meta.com>
 Maintainer-email: Alexandre Gramfort <agramfort@meta.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Robin Tibor Schirrmeister <robintibor@gmail.com>
 License: BSD-3-Clause
 Project-URL: homepage, https://braindecode.org
@@ -38,12 +38,14 @@ Requires-Dist: wfdb
 Requires-Dist: h5py
 Requires-Dist: linear_attention_transformer
 Requires-Dist: docstring_inheritance
+Requires-Dist: rotary_embedding_torch
 Provides-Extra: moabb
 Requires-Dist: moabb>=1.2.0; extra == "moabb"
 Provides-Extra: eegprep
 Requires-Dist: eegprep[eeglabio]>=0.1.1; extra == "eegprep"
-Provides-Extra: hug
-Requires-Dist: huggingface_hub[torch]>=0.20.0; extra == "hug"
+Provides-Extra: hub
+Requires-Dist: huggingface_hub[torch]>=0.20.0; extra == "hub"
+Requires-Dist: zarr<3.0,>=2.18; extra == "hub"
 Provides-Extra: tests
 Requires-Dist: pytest; extra == "tests"
 Requires-Dist: pytest-cov; extra == "tests"
@@ -69,7 +71,11 @@ Requires-Dist: pre-commit; extra == "docs"
 Requires-Dist: openneuro-py; extra == "docs"
 Requires-Dist: plotly; extra == "docs"
 Provides-Extra: all
-Requires-Dist: braindecode[docs,eegprep,hug,moabb,tests]; extra == "all"
+Requires-Dist: braindecode[moabb]; extra == "all"
+Requires-Dist: braindecode[hub]; extra == "all"
+Requires-Dist: braindecode[tests]; extra == "all"
+Requires-Dist: braindecode[docs]; extra == "all"
+Requires-Dist: braindecode[eegprep]; extra == "all"
 Dynamic: license-file
 
 .. image:: https://badges.gitter.im/braindecodechat/community.svg

{braindecode-1.3.0.dev181594385 → braindecode-1.3.0.dev182556615}/braindecode/datasets/__init__.py

@@ -12,7 +12,7 @@ from .base import (
 from .bcicomp import BCICompetitionIVDataset4
 from .bids import BIDSDataset, BIDSEpochsDataset
 from .mne import create_from_mne_epochs, create_from_mne_raw
-from .moabb import BNCI2014001, HGD, MOABBDataset
+from .moabb import BNCI2014_001, HGD, MOABBDataset
 from .nmt import NMT
 from .sleep_physio_challe_18 import SleepPhysionetChallenge2018
 from .sleep_physionet import SleepPhysionet
@@ -29,7 +29,7 @@ __all__ = [
     "BIDSEpochsDataset",
     "MOABBDataset",
     "HGD",
-    "BNCI2014001",
+    "BNCI2014_001",
     "create_from_mne_raw",
     "create_from_mne_epochs",
     "TUH",

{braindecode-1.3.0.dev181594385 → braindecode-1.3.0.dev182556615}/braindecode/datasets/base.py

@@ -19,7 +19,7 @@ import warnings
 from abc import abstractmethod
 from collections.abc import Callable
 from glob import glob
-from typing import Generic, Iterable, no_type_check
+from typing import Any, Generic, Iterable, no_type_check
 
 import mne.io
 import numpy as np
@@ -28,6 +28,9 @@ from mne.utils.docs import deprecated
 from torch.utils.data import ConcatDataset, Dataset
 from typing_extensions import TypeVar
 
+from .hub import HubDatasetMixin
+from .registry import register_dataset
+
 
 def _create_description(description) -> pd.Series:
     if description is not None:
@@ -97,6 +100,7 @@ class RecordDataset(Dataset[tuple[np.ndarray, int | str, tuple[int, int, int]]])
 T = TypeVar("T", bound=RecordDataset)
 
 
+@register_dataset
 class RawDataset(RecordDataset):
     """Returns samples from an mne.io.Raw object along with a target.
 
@@ -129,6 +133,7 @@ class RawDataset(RecordDataset):
 
         # save target name for load/save later
         self.target_name = self._target_name(target_name)
+        self.raw_preproc_kwargs: list[dict[str, Any]] = []
 
     def __getitem__(self, index):
         X = self.raw[:, index][0]
@@ -176,10 +181,12 @@ class RawDataset(RecordDataset):
     "If you want to type a Braindecode dataset (i.e. RawDataset|EEGWindowsDataset|WindowsDataset), "
     "use the RecordDataset class instead."
 )
+@register_dataset
 class BaseDataset(RawDataset):
     pass
 
 
+@register_dataset
 class EEGWindowsDataset(RecordDataset):
     """Returns windows from an mne.Raw object, its window indices, along with a target.
 
@@ -235,6 +242,7 @@ class EEGWindowsDataset(RecordDataset):
         ].to_numpy()
         if self.targets_from == "metadata":
             self.y = metadata.loc[:, "target"].to_list()
+        self.raw_preproc_kwargs: list[dict[str, Any]] = []
 
     def __getitem__(self, index: int):
         """Get a window and its target.
@@ -285,6 +293,7 @@ class EEGWindowsDataset(RecordDataset):
         return len(self.crop_inds)
 
 
+@register_dataset
 class WindowsDataset(RecordDataset):
     """Returns windows from an mne.Epochs object along with a target.
 
@@ -334,6 +343,8 @@ class WindowsDataset(RecordDataset):
         ].to_numpy()
         if self.targets_from == "metadata":
             self.y = metadata.loc[:, "target"].to_list()
+        self.raw_preproc_kwargs: list[dict[str, Any]] = []
+        self.window_preproc_kwargs: list[dict[str, Any]] = []
 
     def __getitem__(self, index: int):
         """Get a window and its target.
@@ -374,12 +385,16 @@ class WindowsDataset(RecordDataset):
         return len(self.windows.events)
 
 
-class BaseConcatDataset(ConcatDataset, Generic[T]):
+@register_dataset
+class BaseConcatDataset(ConcatDataset, HubDatasetMixin, Generic[T]):
     """A base class for concatenated datasets.
 
     Holds either mne.Raw or mne.Epoch in self.datasets and has
     a pandas DataFrame with additional description.
 
+    Includes Hugging Face Hub integration via HubDatasetMixin for
+    uploading and downloading datasets.
+
     Parameters
     ----------
     list_of_ds : list
@@ -794,7 +809,7 @@ class BaseConcatDataset(ConcatDataset, Generic[T]):
                 kwargs = getattr(ds, kwargs_name)
                 if kwargs is not None:
                     with open(kwargs_file_path, "w") as f:
-                        json.dump(kwargs, f)
+                        json.dump(kwargs, f, indent=2)
 
     @staticmethod
     def _save_target_name(sub_dir, ds):