Braindecode 1.3.0.dev173675610__tar.gz → 1.3.0.dev173767962__tar.gz

{braindecode-1.3.0.dev173675610/braindecode.egg-info → braindecode-1.3.0.dev173767962}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: braindecode
-Version: 1.3.0.dev173675610
+Version: 1.3.0.dev173767962
 Summary: Deep learning software to decode EEG, ECG or MEG signals
 Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>
 Maintainer-email: Alexandre Gramfort <agramfort@meta.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Robin Tibor Schirrmeister <robintibor@gmail.com>
@@ -40,8 +40,6 @@ Requires-Dist: linear_attention_transformer
 Requires-Dist: docstring_inheritance
 Provides-Extra: moabb
 Requires-Dist: moabb>=1.2.0; extra == "moabb"
-Provides-Extra: eegprep
-Requires-Dist: eegprep[eeglabio]>=0.1.1; extra == "eegprep"
 Provides-Extra: hug
 Requires-Dist: huggingface_hub[torch]>=0.20.0; extra == "hug"
 Provides-Extra: tests
@@ -69,7 +67,7 @@ Requires-Dist: pre-commit; extra == "docs"
 Requires-Dist: openneuro-py; extra == "docs"
 Requires-Dist: plotly; extra == "docs"
 Provides-Extra: all
-Requires-Dist: braindecode[docs,eegprep,hug,moabb,tests]; extra == "all"
+Requires-Dist: braindecode[docs,hug,moabb,tests]; extra == "all"
 Dynamic: license-file
 
 .. image:: https://badges.gitter.im/braindecodechat/community.svg

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/datautil/__init__.py

@@ -2,10 +2,6 @@
 Utilities for data manipulation.
 """
 
-from .channel_utils import (
-    division_channels_idx,
-    match_hemisphere_chans,
-)
 from .serialization import (
     _check_save_dir_empty,
     load_concat_dataset,
@@ -53,10 +49,4 @@ def __getattr__(name):
     raise AttributeError("No possible import named " + name)
 
 
-__all__ = [
-    "load_concat_dataset",
-    "save_concat_dataset",
-    "_check_save_dir_empty",
-    "match_hemisphere_chans",
-    "division_channels_idx",
-]
+__all__ = ["load_concat_dataset", "save_concat_dataset", "_check_save_dir_empty"]

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/__init__.py

@@ -20,7 +20,6 @@ from .eegminer import EEGMiner
 from .eegnet import EEGNet, EEGNetv4
 from .eegnex import EEGNeX
 from .eegsimpleconv import EEGSimpleConv
-from .eegsym import EEGSym
 from .eegtcnet import EEGTCNet
 from .fbcnet import FBCNet
 from .fblightconvnet import FBLightConvNet
@@ -73,7 +72,6 @@ __all__ = [
     "EEGNet",
     "EEGNetv4",
     "EEGNeX",
-    "EEGSym",
     "EEGSimpleConv",
     "EEGTCNet",
     "FBCNet",

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/atcnet.py

@@ -15,7 +15,7 @@ from braindecode.modules import CausalConv1d, Ensure4d, MaxNormLinear
 class ATCNet(EEGModuleMixin, nn.Module):
     """ATCNet from Altaheri et al. (2022) [1]_.
 
-    :bdg-success:`Convolution` :bdg-secondary:`Recurrent` :bdg-info:`Small Attention`
+    :bdg-success:`Convolution` :bdg-info:`Small Attention`
 
     .. figure:: https://user-images.githubusercontent.com/25565236/185449791-e8539453-d4fa-41e1-865a-2cf7e91f60ef.png
         :align: center

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/attn_sleep.py

@@ -18,8 +18,6 @@ from braindecode.modules import CausalConv1d
 class AttnSleep(EEGModuleMixin, nn.Module):
     """Sleep Staging Architecture from Eldele et al. (2021) [Eldele2021]_.
 
-    :bdg-success:`Convolution` :bdg-info:`Small Attention`
-
     .. figure:: https://raw.githubusercontent.com/emadeldeen24/AttnSleep/refs/heads/main/imgs/AttnSleep.png
         :align: center
         :alt: AttnSleep Architecture

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/contrawr.py

@@ -10,8 +10,6 @@ from braindecode.models.base import EEGModuleMixin
 class ContraWR(EEGModuleMixin, nn.Module):
     """Contrast with the World Representation ContraWR from Yang et al (2021) [Yang2021]_.
 
-    :bdg-success:`Convolution`
-
     This model is a convolutional neural network that uses a spectral
     representation with a series of convolutional layers and residual blocks.
     The model is designed to learn a representation of the EEG signal that can

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/ctnet.py

@@ -27,8 +27,6 @@ from braindecode.modules import (
 class CTNet(EEGModuleMixin, nn.Module):
     """CTNet from Zhao, W et al (2024) [ctnet]_.
 
-    :bdg-success:`Convolution` :bdg-info:`Small Attention`
-
      A Convolutional Transformer Network for EEG-Based Motor Imagery Classification
 
      .. figure:: https://raw.githubusercontent.com/snailpt/CTNet/main/architecture.png

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/deepsleepnet.py

@@ -10,7 +10,7 @@ from braindecode.models.base import EEGModuleMixin
 class DeepSleepNet(EEGModuleMixin, nn.Module):
     """DeepSleepNet from Supratak et al. (2017) [Supratak2017]_.
 
-    :bdg-success:`Convolution` :bdg-secondary:`Recurrent`
+    :bdg-success:`Convolution` :bdg-info:`Recurrent`
 
     .. figure:: https://raw.githubusercontent.com/akaraspt/deepsleepnet/master/img/deepsleepnet.png
         :align: center

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/eegitnet.py

@@ -11,8 +11,6 @@ from braindecode.modules import DepthwiseConv2d, Ensure4d, InceptionBlock
 class EEGITNet(EEGModuleMixin, nn.Sequential):
     """EEG-ITNet from Salami, et al (2022) [Salami2022]_
 
-    :bdg-success:`Convolution` :bdg-secondary:`Recurrent`
-
     .. figure:: https://braindecode.org/dev/_static/model/eegitnet.jpg
         :align: center
         :alt: EEG-ITNet Architecture

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/eegminer.py

@@ -21,8 +21,6 @@ _eeg_miner_methods = ["mag", "corr", "plv"]
 class EEGMiner(EEGModuleMixin, nn.Module):
     """EEGMiner from Ludwig et al (2024) [eegminer]_.
 
-    :bdg-success:`Convolution` :bdg-warning:`Interpretability`
-
     .. figure:: https://content.cld.iop.org/journals/1741-2552/21/3/036010/revision2/jnead44d7f1_hr.jpg
        :align: center
        :alt: EEGMiner Architecture

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/eegtcnet.py

@@ -15,8 +15,6 @@ from braindecode.modules import Chomp1d, MaxNormLinear
 class EEGTCNet(EEGModuleMixin, nn.Module):
     """EEGTCNet model from Ingolfsson et al. (2020) [ingolfsson2020]_.
 
-    :bdg-success:`Convolution` :bdg-secondary:`Recurrent`
-
     .. figure:: https://braindecode.org/dev/_static/model/eegtcnet.jpg
         :align: center
         :alt: EEGTCNet Architecture

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/fbcnet.py

@@ -31,8 +31,6 @@ _valid_layers = {
 class FBCNet(EEGModuleMixin, nn.Module):
     """FBCNet from Mane, R et al (2021) [fbcnet2021]_.
 
-    :bdg-success:`Convolution` :bdg-primary:`Filterbank`
-
     .. figure:: https://raw.githubusercontent.com/ravikiran-mane/FBCNet/refs/heads/master/FBCNet-V2.png
         :align: center
         :alt: FBCNet Architecture
@@ -69,9 +67,7 @@ class FBCNet(EEGModuleMixin, nn.Module):
     linear_max_norm : float, default=0.5
         Maximum norm for the final linear layer.
     filter_parameters: dict, default None
-        Dictionary of parameters to use for the FilterBankLayer.
-        If None, a default Chebyshev Type II filter with transition bandwidth of
-        2 Hz and stop-band ripple of 30 dB will be used.
+        Parameters for the FilterBankLayer
 
     References
     ----------

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/fblightconvnet.py

@@ -18,8 +18,6 @@ from braindecode.modules import (
 class FBLightConvNet(EEGModuleMixin, nn.Module):
     """LightConvNet from Ma, X et al (2023) [lightconvnet]_.
 
-    :bdg-success:`Convolution` :bdg-primary:`Filterbank`
-
     .. figure:: https://raw.githubusercontent.com/Ma-Xinzhi/LightConvNet/refs/heads/main/network_architecture.png
         :align: center
         :alt: LightConvNet Neural Network

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/fbmsnet.py

@@ -1,6 +1,6 @@
 from __future__ import annotations
 
-from typing import Any, Sequence
+from typing import Optional, Sequence
 
 import torch
 from einops.layers.torch import Rearrange
@@ -19,8 +19,6 @@ from braindecode.modules import (
 class FBMSNet(EEGModuleMixin, nn.Module):
     """FBMSNet from Liu et al (2022) [fbmsnet]_.
 
-    :bdg-success:`Convolution` :bdg-primary:`Filterbank`
-
     .. figure:: https://raw.githubusercontent.com/Want2Vanish/FBMSNet/refs/heads/main/FBMSNet.png
         :align: center
         :alt: FBMSNet Architecture
@@ -57,28 +55,16 @@ class FBMSNet(EEGModuleMixin, nn.Module):
     ----------
     n_bands : int, default=9
         Number of input channels (e.g., number of frequency bands).
-    n_filters_spat : int, default=36
-        Number of output channels from the MixedConv2d layer.
-    temporal_layer : str, default='LogVarLayer'
-        Temporal aggregation layer to use.
-    n_dim: int, default=3
-        Dimension of the temporal reduction layer.
     stride_factor : int, default=4
         Stride factor for temporal segmentation.
+    temporal_layer : str, default='LogVarLayer'
+        Temporal aggregation layer to use.
+    n_filters_spat : int, default=36
+        Number of output channels from the MixedConv2d layer.
     dilatability : int, default=8
         Expansion factor for the spatial convolution block.
     activation : nn.Module, default=nn.SiLU
         Activation function class to apply.
-    kernels_weights : Sequence[int], default=(15, 31, 63, 125)
-        Kernel sizes for the MixedConv2d layer.
-    cnn_max_norm : float, default=2
-        Maximum norm constraint for the convolutional layers.
-    linear_max_norm : float, default=0.5
-        Maximum norm constraint for the linear layers.
-    filter_parameters : dict, default=None
-        Dictionary of parameters to use for the FilterBankLayer.
-        If None, a default Chebyshev Type II filter with transition bandwidth of
-        2 Hz and stop-band ripple of 30 dB will be used.
     verbose: bool, default False
         Verbose parameter to create the filter using mne.
 
@@ -115,7 +101,7 @@ class FBMSNet(EEGModuleMixin, nn.Module):
         cnn_max_norm: float = 2,
         linear_max_norm: float = 0.5,
         verbose: bool = False,
-        filter_parameters: dict[Any, Any] | None = None,
+        filter_parameters: Optional[dict] = None,
     ):
         super().__init__(
             n_chans=n_chans,

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/ifnet.py

@@ -31,8 +31,6 @@ from braindecode.modules import (
 class IFNet(EEGModuleMixin, nn.Module):
     """IFNetV2 from Wang J et al (2023) [ifnet]_.
 
-    :bdg-success:`Convolution` :bdg-primary:`Filterbank`
-
     .. figure:: https://raw.githubusercontent.com/Jiaheng-Wang/IFNet/main/IFNet.png
         :align: center
         :alt: IFNetV2 Architecture

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/labram.py

@@ -2,7 +2,6 @@
 Labram module.
 Authors: Wei-Bang Jiang
          Bruno Aristimunha <b.aristimunha@gmail.com>
-         Matthew Chen <matt.chen4260@gmail.com>
 License: BSD 3 clause
 """
 
@@ -23,14 +22,14 @@ from braindecode.modules import MLP, DropPath
 class Labram(EEGModuleMixin, nn.Module):
     """Labram from Jiang, W B et al (2024) [Jiang2024]_.
 
-    :bdg-success:`Convolution` :bdg-danger:`Large Brain Model`
+    :bdg-danger:`Large Brain Model`
 
     .. figure:: https://arxiv.org/html/2405.18765v1/x1.png
         :align: center
         :alt: Labram Architecture.
 
     Large Brain Model for Learning Generic Representations with Tremendous
-    EEG Data in BCI from [Jiang2024]_.
+    EEG Data in BCI from [Jiang2024]_
 
     This is an **adaptation** of the code [Code2024]_ from the Labram model.
 
@@ -38,8 +37,7 @@ class Labram(EEGModuleMixin, nn.Module):
     BEiTv2 [BeiTv2]_.
 
     The models can be used in two modes:
-
-    - Neural Tokenizer: Design to get an embedding layers (e.g. classification).
+    - Neural Tokenizor: Design to get an embedding layers (e.g. classification).
     - Neural Decoder: To extract the ampliture and phase outputs with a VQSNP.
 
     The braindecode's modification is to allow the model to be used in
@@ -123,7 +121,7 @@ class Labram(EEGModuleMixin, nn.Module):
     init_scale : float (default=0.001)
         The initial scale to be used in the parameters of the model.
     neural_tokenizer : bool (default=True)
-        The model can be used in two modes: Neural Tokenizer or Neural Decoder.
+        The model can be used in two modes: Neural Tokenizor or Neural Decoder.
     attn_head_dim : bool (default=None)
         The head dimension to be used in the attention layer, to be used only
         during pre-training.

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/msvtnet.py

@@ -13,8 +13,6 @@ from braindecode.models.base import EEGModuleMixin
 class MSVTNet(EEGModuleMixin, nn.Module):
     """MSVTNet model from Liu K et al (2024) from [msvt2024]_.
 
-    :bdg-success:`Convolution` :bdg-secondary:`Recurrent` :bdg-info:`Small Attention`
-
     This model implements a multi-scale convolutional transformer network
     for EEG signal classification, as described in [msvt2024]_.
 

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/patchedtransformer.py

@@ -16,7 +16,7 @@ from braindecode.models.base import EEGModuleMixin
 class PBT(EEGModuleMixin, nn.Module):
     r"""Patched Brain Transformer (PBT) model from Klein et al. (2025) [pbt]_.
 
-    :bdg-danger:`Large Brain Model`
+    :bdg-danger:`Large Brain Models`
 
     This implementation was based in https://github.com/timonkl/PatchedBrainTransformer/
 

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/signal_jepa.py

@@ -146,7 +146,7 @@ class _BaseSignalJEPA(EEGModuleMixin, nn.Module):
 class SignalJEPA(_BaseSignalJEPA):
     """Architecture introduced in signal-JEPA for self-supervised pre-training, Guetschel, P et al (2024) [1]_
 
-    :bdg-success:`Convolution` :bdg-dark-line:`Channel` :bdg-danger:`Large Brain Model`
+    :bdg-danger:`Large Brain Model`
 
     This model is not meant for classification but for SSL pre-training.
     Its output shape depends on the input shape.
@@ -234,7 +234,7 @@ class SignalJEPA(_BaseSignalJEPA):
 class SignalJEPA_Contextual(_BaseSignalJEPA):
     """Contextual downstream architecture introduced in signal-JEPA Guetschel, P et al (2024) [1]_.
 
-    :bdg-success:`Convolution` :bdg-dark-line:`Channel` :bdg-danger:`Large Brain Model`
+    :bdg-danger:`Large Brain Model`
 
     This architecture is one of the variants of :class:`SignalJEPA`
     that can be used for classification purposes.
@@ -407,7 +407,7 @@ class SignalJEPA_Contextual(_BaseSignalJEPA):
 class SignalJEPA_PostLocal(_BaseSignalJEPA):
     """Post-local downstream architecture introduced in signal-JEPA Guetschel, P et al (2024) [1]_.
 
-    :bdg-success:`Convolution` :bdg-dark-line:`Channel` :bdg-danger:`Large Brain Model`
+    :bdg-danger:`Large Brain Model`
 
     This architecture is one of the variants of :class:`SignalJEPA`
     that can be used for classification purposes.
@@ -558,8 +558,6 @@ class SignalJEPA_PostLocal(_BaseSignalJEPA):
 class SignalJEPA_PreLocal(_BaseSignalJEPA):
     """Pre-local downstream architecture introduced in signal-JEPA Guetschel, P et al (2024) [1]_.
 
-    :bdg-success:`Convolution` :bdg-dark-line:`Channel` :bdg-danger:`Large Brain Model`
-
     This architecture is one of the variants of :class:`SignalJEPA`
     that can be used for classification purposes.
 

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/sinc_shallow.py

@@ -12,8 +12,6 @@ from braindecode.models.base import EEGModuleMixin
 class SincShallowNet(EEGModuleMixin, nn.Module):
     """Sinc-ShallowNet from Borra, D et al (2020) [borra2020]_.
 
-    :bdg-success:`Convolution` :bdg-warning:`Interpretability`
-
     .. figure:: https://ars.els-cdn.com/content/image/1-s2.0-S0893608020302021-gr2_lrg.jpg
         :align: center
         :alt: SincShallowNet Architecture

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/summary.csv

@@ -13,7 +13,6 @@ EEGInceptionMI,Motor Imagery,Classification,250,"n_chans, n_outputs, n_times",55
 EEGITNet,Motor Imagery,Classification,125,"n_chans, n_outputs, n_times",5212,"EEGITNet(n_chans=22,  n_outputs=4,  n_times=500)","Convolution,Recurrent"
 EEGNet,General,Classification,128,"n_chans, n_outputs, n_times",2484,"EEGNet(n_chans=22,  n_outputs=4,  n_times=512)","Convolution"
 EEGNeX,Motor Imagery,Classification,125,"n_chans, n_outputs, n_times",55940,"EEGNeX(n_chans=22,  n_outputs=4,  n_times=500)","Convolution"
-EEGSym,Motor Imagery,Classification,250,"n_chans, n_outputs, n_times, sfreq",299218,"EEGSym(n_chans=22, n_outputs=4, n_times=1000, sfreq=250)","Convolution,Channel"
 EEGMiner,Emotion Recognition,Classification,128,"n_chans, n_outputs, n_times, sfreq",7572,"EEGMiner(n_chans=62, n_outputs=2, n_times=2560, sfreq=128)","Convolution,Interpretability"
 EEGSimpleConv,Motor Imagery,Classification,80,"n_chans, n_outputs, sfreq",730404,"EEGSimpleConv(n_chans=22,  n_outputs=4,  n_times=320, sfreq=80)","Convolution"
 EEGTCNet,Motor Imagery,Classification,250,"n_chans, n_outputs",4516,"EEGTCNet(n_chans=22,  n_outputs=4,  n_times=1000, kern_length=32)","Convolution,Recurrent"

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/syncnet.py

@@ -10,8 +10,6 @@ from braindecode.models.base import EEGModuleMixin
 class SyncNet(EEGModuleMixin, nn.Module):
     """Synchronization Network (SyncNet) from Li, Y et al (2017) [Li2017]_.
 
-    :bdg-warning:`Interpretability`
-
     .. figure:: https://braindecode.org/dev/_static/model/SyncNet.png
         :align: center
         :alt: SyncNet Architecture

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/tcn.py

@@ -14,8 +14,6 @@ from braindecode.modules import Chomp1d, Ensure4d, SqueezeFinalOutput
 class BDTCN(EEGModuleMixin, nn.Module):
     """Braindecode TCN from Gemein, L et al (2020) [gemein2020]_.
 
-    :bdg-success:`Convolution` :bdg-secondary:`Recurrent`
-
     .. figure:: https://ars.els-cdn.com/content/image/1-s2.0-S1053811920305073-gr3_lrg.jpg
        :align: center
        :alt: Braindecode TCN Architecture

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/models/util.py

@@ -79,7 +79,6 @@ models_mandatory_parameters = [
     ("SPARCNet", ["n_chans", "n_outputs", "n_times"], None),
     ("ContraWR", ["n_chans", "n_outputs", "sfreq", "n_times"], dict(sfreq=200.0)),
     ("EEGNeX", ["n_chans", "n_outputs", "n_times"], None),
-    ("EEGSym", ["chs_info", "n_chans", "n_outputs", "n_times", "sfreq"], None),
     ("TSception", ["n_chans", "n_outputs", "n_times", "sfreq"], dict(sfreq=200.0)),
     ("EEGTCNet", ["n_chans", "n_outputs", "n_times"], None),
     ("SyncNet", ["n_chans", "n_outputs", "n_times"], None),

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/modules/filter.py

@@ -109,6 +109,11 @@ class FilterBankLayer(nn.Module):
         or "firwin2" to use :func:`scipy.signal.firwin2`. "firwin" uses
         a time-domain design technique that generally gives improved
         attenuation using fewer samples than "firwin2".
+    pad : str, default='reflect_limited'
+        The type of padding to use. Supports all func:`numpy.pad()` mode options.
+        Can also be "reflect_limited", which pads with a reflected version of
+        each vector mirrored on the first and last values of the vector,
+        followed by zeros. Only used for ``method='fir'``.
     verbose: bool | str | int | None, default=True
         Control verbosity of the logging output. If ``None``, use the default
         verbosity level. See the func:`mne.verbose` for details.
@@ -178,6 +183,7 @@ class FilterBankLayer(nn.Module):
                     "The band_filters items should be splitable in 2 values."
                 )
 
+        # and we accepted as
         self.band_filters = band_filters
         self.n_bands = len(band_filters)
         self.phase = phase

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/preprocessing/__init__.py

@@ -1,16 +1,3 @@
-from .eegprep_preprocess import (
-    EEGPrep,
-    ReinterpolateRemovedChannels,
-    RemoveBadChannels,
-    RemoveBadChannelsNoLocs,
-    RemoveBadWindows,
-    RemoveBursts,
-    RemoveCommonAverageReference,
-    RemoveDCOffset,
-    RemoveDrifts,
-    RemoveFlatChannels,
-    Resampling,
-)
 from .mne_preprocess import (  # type: ignore[attr-defined]
     Crop,
     DropChannels,
@@ -44,17 +31,6 @@ __all__ = [
     "Filter",
     "Pick",
     "Crop",
-    "EEGPrep",
-    "RemoveDCOffset",
-    "Resampling",
-    "RemoveFlatChannels",
-    "RemoveDrifts",
-    "RemoveBadChannels",
-    "RemoveBadChannelsNoLocs",
-    "RemoveBursts",
-    "RemoveBadWindows",
-    "ReinterpolateRemovedChannels",
-    "RemoveCommonAverageReference",
     "create_windows_from_events",
     "create_fixed_length_windows",
     "create_windows_from_target_channels",

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode/preprocessing/windowers.py

@@ -11,7 +11,6 @@
 #          Maciej Sliwowski <maciek.sliwowski@gmail.com>
 #          Mohammed Fattouh <mo.fattouh@gmail.com>
 #          Robin Schirrmeister <robintibor@gmail.com>
-#          Matthew Chen <matt.chen42601@gmail.com>
 #
 # License: BSD (3-clause)
 
@@ -515,7 +514,7 @@ def _create_windows_from_events(
             }
         )
 
-    events, events_id = mne.events_from_annotations(ds.raw, mapping, verbose=verbose)
+    events, events_id = mne.events_from_annotations(ds.raw, mapping)
     onsets = events[:, 0]
     # Onsets are relative to the beginning of the recording
     filtered_durations = np.array(

braindecode-1.3.0.dev173767962/braindecode/version.py

@@ -0,0 +1 @@
+__version__ = "1.3.0.dev173767962"

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962/braindecode.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: braindecode
-Version: 1.3.0.dev173675610
+Version: 1.3.0.dev173767962
 Summary: Deep learning software to decode EEG, ECG or MEG signals
 Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>
 Maintainer-email: Alexandre Gramfort <agramfort@meta.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Robin Tibor Schirrmeister <robintibor@gmail.com>
@@ -40,8 +40,6 @@ Requires-Dist: linear_attention_transformer
 Requires-Dist: docstring_inheritance
 Provides-Extra: moabb
 Requires-Dist: moabb>=1.2.0; extra == "moabb"
-Provides-Extra: eegprep
-Requires-Dist: eegprep[eeglabio]>=0.1.1; extra == "eegprep"
 Provides-Extra: hug
 Requires-Dist: huggingface_hub[torch]>=0.20.0; extra == "hug"
 Provides-Extra: tests
@@ -69,7 +67,7 @@ Requires-Dist: pre-commit; extra == "docs"
 Requires-Dist: openneuro-py; extra == "docs"
 Requires-Dist: plotly; extra == "docs"
 Provides-Extra: all
-Requires-Dist: braindecode[docs,eegprep,hug,moabb,tests]; extra == "all"
+Requires-Dist: braindecode[docs,hug,moabb,tests]; extra == "all"
 Dynamic: license-file
 
 .. image:: https://badges.gitter.im/braindecodechat/community.svg

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode.egg-info/SOURCES.txt

@@ -33,7 +33,6 @@ braindecode/datasets/sleep_physionet.py
 braindecode/datasets/tuh.py
 braindecode/datasets/xy.py
 braindecode/datautil/__init__.py
-braindecode/datautil/channel_utils.py
 braindecode/datautil/serialization.py
 braindecode/datautil/util.py
 braindecode/functional/__init__.py
@@ -58,7 +57,6 @@ braindecode/models/eegminer.py
 braindecode/models/eegnet.py
 braindecode/models/eegnex.py
 braindecode/models/eegsimpleconv.py
-braindecode/models/eegsym.py
 braindecode/models/eegtcnet.py
 braindecode/models/fbcnet.py
 braindecode/models/fblightconvnet.py
@@ -96,10 +94,8 @@ braindecode/modules/stats.py
 braindecode/modules/util.py
 braindecode/modules/wrapper.py
 braindecode/preprocessing/__init__.py
-braindecode/preprocessing/eegprep_preprocess.py
 braindecode/preprocessing/mne_preprocess.py
 braindecode/preprocessing/preprocess.py
-braindecode/preprocessing/util.py
 braindecode/preprocessing/windowers.py
 braindecode/samplers/__init__.py
 braindecode/samplers/base.py

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/braindecode.egg-info/requires.txt

@@ -17,7 +17,7 @@ linear_attention_transformer
 docstring_inheritance
 
 [all]
-braindecode[docs,eegprep,hug,moabb,tests]
+braindecode[docs,hug,moabb,tests]
 
 [docs]
 sphinx_gallery
@@ -38,9 +38,6 @@ pre-commit
 openneuro-py
 plotly
 
-[eegprep]
-eegprep[eeglabio]>=0.1.1
-
 [hug]
 huggingface_hub[torch]>=0.20.0
 

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/docs/api.rst

@@ -73,7 +73,6 @@ save and load models from the Hugging Face Hub, if the ``braindecode[hug]`` pack
     EEGNet
     EEGNeX
     EEGSimpleConv
-    EEGSym
     EEGTCNet
     FBCNet
     FBLightConvNet
@@ -375,39 +374,12 @@ Preprocessing
     filterbank
     preprocess
     Preprocessor
-    EEGPrep
-
-
-Preprocessing Transform
-''''''''''''''''''''''''
-
-These modules implement various preprocessing transforms that can be applied
-to EEG data, including cropping, filtering, resampling, and channel selection.
-
-:py:mod:`braindecode.preprocessing`:
-
-.. currentmodule:: braindecode.preprocessing
-
-.. autosummary::
-   :toctree: generated/
-
-    Crop
+    Resample
     DropChannels
+    SetEEGReference
     Filter
     Pick
-    ReinterpolateRemovedChannels
-    RemoveBadChannels
-    RemoveBadChannelsNoLocs
-    RemoveBadWindows
-    RemoveBursts
-    RemoveCommonAverageReference
-    RemoveDCOffset
-    RemoveDrifts
-    RemoveFlatChannels
-    Resample
-    Resampling
-    SetEEGReference
-
+    Crop
 
 Data Utils
 ==========

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/docs/whats_new.rst

@@ -27,14 +27,9 @@ Enhancements
 - Adding :class:`braindecode.models.SSTDPN`  (:gh:`790` by `Can Han`_ and `Bruno Aristimunha`_ )
 - Added :class:`braindecode.models.BENDR`  (:gh:`802` by `Bruno Aristimunha`_ )
 - Adding a tutorial for fine-tuning a pre-trained foundation model (:gh:`794` by `Pierre Guetschel`_)
-- Adding artifact removal preprocessing steps, incl. :class:`braindecode.preprocessing.EEGPrep` (:gh:`796` by `Christian Kothe`_)
 - Including huggingface hub mixin to all models (:gh:`795` by `Kuntal Kokate`_ )
 - Better inheritance between the different dataset classes (:gh:`806` by `Pierre Guetschel`_ )
-- Fix minor documentation issues in Labram (:gh:`808` by `Matthew Chen`_)
-- Including missed tag in all the models and creating some test for it (:gh:`811` by `Bruno Aristimunha`_ )
-- Modify verbosity of create_window_from_events (:gh:`814` by `Matthew Chen`_)
-- Modify the interface of FBMSNet for consistency with FBCNet + Unit Tests (:gh:`819` by `Matthew Chen`_)
-- Adding :class:`braindecode.models.EEGSym` model (:gh:`697` by `Pierre Guetschel`_ and `Bruno Aristimunha`_ )
+
 
 
 API changes
@@ -417,6 +412,4 @@ Authors
 .. _Hamdi Altaheri: https://github.com/Altaheri
 .. _José Mauricio: https://github.com/josemaurici
 .. _Can Han: https://github.com/hancan16
-.. _Christian Kothe: https://github.com/chkothe
 .. _Kuntal Kokate: https://github.com/Kkuntal990
-.. _Matthew Chen: https://github.com/MatthewChen37

{braindecode-1.3.0.dev173675610 → braindecode-1.3.0.dev173767962}/pyproject.toml

@@ -65,7 +65,6 @@ documentation = "https://braindecode.org/stable/index.html"
 
 [project.optional-dependencies]
 moabb = ["moabb>=1.2.0"]
-eegprep = ["eegprep[eeglabio]>=0.1.1"]
 hug = ["huggingface_hub[torch]>=0.20.0"]
 tests = [
     'pytest',
@@ -94,7 +93,7 @@ docs = [
     'plotly',
 ]
 all = [
-    "braindecode[moabb,hug,tests,docs,eegprep]"
+    "braindecode[moabb,hug,tests,docs]"
 ]
 
 [tool.setuptools]