BoolDog 0.1.0__tar.gz

booldog-0.1.0/BoolDog.egg-info/PKG-INFO

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+Metadata-Version: 2.4
+Name: BoolDog
+Version: 0.1.0
+Summary: A Python package for analyses of Boolean and semi-quantitative Boolean networks.
+Author-email: Carissa Bleker <carissa.bleker@nib.si>
+License-Expression: GPL-3.0
+Project-URL: Homepage, https://github.com/NIB-SI/BoolDog
+Project-URL: Repository, https://github.com/NIB-SI/BoolDog
+Project-URL: Issues, https://github.com/NIB-SI/BoolDog/issues
+Project-URL: Documentation, https://nib-si.github.io/BoolDog/
+Keywords: boolean networks,systems biology,computational biology,network analysis
+Classifier: Programming Language :: Python :: 3
+Classifier: Operating System :: OS Independent
+Requires-Python: >=3.12
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: pyboolnet==3.0.16
+Requires-Dist: matplotlib>=3.4
+Requires-Dist: numpy>=1.20
+Requires-Dist: scipy>=1.6
+Requires-Dist: xmltodict>=0.13.0
+Provides-Extra: sbml
+Requires-Dist: python-libsbml>=5.19; extra == "sbml"
+Requires-Dist: tabularqual; extra == "sbml"
+Provides-Extra: networks
+Requires-Dist: networkx; extra == "networks"
+Requires-Dist: igraph==0.11.9; extra == "networks"
+Provides-Extra: graphviz
+Requires-Dist: pygraphviz; extra == "graphviz"
+Provides-Extra: all
+Requires-Dist: python-libsbml>=5.19; extra == "all"
+Requires-Dist: tabularqual; extra == "all"
+Requires-Dist: networkx; extra == "all"
+Requires-Dist: igraph==0.11.9; extra == "all"
+Requires-Dist: pygraphviz; extra == "all"
+Dynamic: license-file
+
+# BoolDog <img src="docs/figures/logo.png" raw=true alt="BoolDoG icon"  width="240" align="right" >
+
+A Python package for analyses of Boolean and semi-quantitative Boolean networks.
+
+## Documentation
+
+For installation, usage, and examples, see the documentation at 
+[nib-si.github.io/BoolDoG](https://nib-si.github.io/BoolDoG)
+
+## Citation
+
+TODO
+
+## Development version
+
+Development version of BoolDog can be installed from GitHub.
+
+To install:
+
+```bash
+git clone https://github.com/NIB-SI/BoolDog.git
+cd BoolDoG
+pip install .
+```
+
+To remove:
+
+```bash
+pip uninstall booldog
+```
+
+---
+
+

booldog-0.1.0/BoolDog.egg-info/SOURCES.txt

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+LICENSE
+README.md
+pyproject.toml
+BoolDog.egg-info/PKG-INFO
+BoolDog.egg-info/SOURCES.txt
+BoolDog.egg-info/dependency_links.txt
+BoolDog.egg-info/requires.txt
+BoolDog.egg-info/top_level.txt
+booldog/__init__.py
+booldog/classes.py
+booldog/network.py
+booldog/boolean/__init__.py
+booldog/boolean/boolean.py
+booldog/boolean/modifications.py
+booldog/continuous/__init__.py
+booldog/continuous/ode_factory.py
+booldog/continuous/semi_quantitative.py
+booldog/io/__init__.py
+booldog/io/biomodels.py
+booldog/io/bnet.py
+booldog/io/circuit.py
+booldog/io/cytoscape.py
+booldog/io/igraph.py
+booldog/io/interaction_logic.py
+booldog/io/interaction_networks.py
+booldog/io/networkx.py
+booldog/io/primes.py
+booldog/io/sbml.py
+booldog/io/tabularqual.py
+booldog/resources/__init__.py
+booldog/resources/cytoscape_style.xml
+booldog/resources/stylesheet.mplstyle
+booldog/simulation_result/__init__.py
+booldog/simulation_result/boolean_result.py
+booldog/simulation_result/continuous_result.py
+booldog/utils/__init__.py
+booldog/utils/boolean_normal_forms.py
+booldog/utils/cytoscape_utils.py
+booldog/utils/decorators.py
+booldog/utils/logger.py
+booldog/utils/misc.py
+tests/test_biomodels.py
+tests/test_io.py
+tests/test_utils.py

booldog-0.1.0/BoolDog.egg-info/dependency_links.txt

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+

booldog-0.1.0/BoolDog.egg-info/requires.txt

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+pyboolnet==3.0.16
+matplotlib>=3.4
+numpy>=1.20
+scipy>=1.6
+xmltodict>=0.13.0
+
+[all]
+python-libsbml>=5.19
+tabularqual
+networkx
+igraph==0.11.9
+pygraphviz
+
+[graphviz]
+pygraphviz
+
+[networks]
+networkx
+igraph==0.11.9
+
+[sbml]
+python-libsbml>=5.19
+tabularqual

booldog-0.1.0/BoolDog.egg-info/top_level.txt

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+booldog