BayesianEstimationTool 1.0.0__tar.gz

bayesianestimationtool-1.0.0/BayesianEstimationTool.egg-info/PKG-INFO

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+Metadata-Version: 2.4
+Name: BayesianEstimationTool
+Version: 1.0.0
+Summary: Hierarchical Bayesian estimation and prediction for mechanistic models
+License-Expression: Apache-2.0
+Project-URL: Repository, https://github.com/rafaelrbravo/BayesianEstimationTool
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: jax
+Requires-Dist: numpyro
+Requires-Dist: numpy
+Requires-Dist: cloudpickle
+Dynamic: license-file
+
+# BayesianEstimationTool (BET)
+
+BayesianEstimationTool fits population-level parameters and individual-specific latent variables with NumPyro inference methods.
+
+## Documentation
+
+Start here:
+
+- **[Manual (Markdown)](docs/Manual.md)** — model contracts, likelihoods, masking, JAX modeling, inference, persistence, and testing.
+- **[Manual (PDF)](docs/Manual.pdf)** — printable manual. If GitHub cannot preview the PDF, download it to view locally.
+- **[Cheatsheet (Markdown)](docs/Cheatsheet.md)** — compact API reference and common workflows.
+- **[Cheatsheet (PDF)](docs/Cheatsheet.pdf)** — one-page printable reference. If GitHub cannot preview the PDF, download it to view locally.
+
+**Manual.md is the authoritative manual.** Its PDF is rendered directly from that file using GitHub-like styling and print pagination. The cheatsheet is a separate compact, Python-generated reference. To regenerate locally, install `requests`, `playwright`, and `reportlab`, install Playwright Chromium (`python -m playwright install chromium`), and set `GITHUB_TOKEN` to a token permitted to call GitHub's Markdown API for this repository. The manual generator uses GitHub's Markdown rendering API and Playwright; the cheatsheet generator uses ReportLab:
+
+```bash
+python docs/generators/markdown_to_pdf.py docs/Manual.md
+python docs/generators/cheatsheet.py
+```
+
+The GitHub Actions test workflow regenerates the PDFs (and the Python-authored cheatsheet Markdown), checks that the cheatsheet is exactly one PDF page, uploads the outputs as a `bet-docs` artifact, and runs the test suite.
+
+## Installation
+
+BET requires Python 3.10 or newer. **After the first release is published**, install the latest version from [PyPI](https://pypi.org/project/BayesianEstimationTool/):
+
+```bash
+python -m pip install BayesianEstimationTool
+```
+
+To install the specific first release:
+
+```bash
+python -m pip install BayesianEstimationTool==1.0.0
+```
+
+Alternatively, install directly from the tagged GitHub source:
+
+```bash
+python -m pip install "git+https://github.com/rafaelrbravo/BayesianEstimationTool.git@v1.0.0"
+```
+
+You can also download a wheel (`.whl`) or source archive (`.tar.gz`) from [GitHub Releases](https://github.com/rafaelrbravo/BayesianEstimationTool/releases) and install it with `python -m pip install PATH_TO_DOWNLOADED_FILE`. These release assets become available after publishing.
+
+Verify installation:
+
+```bash
+python -c "import BayesianEstimationTool as bet; print(bet.Estimator)"
+```
+
+For editable development from a source checkout, run `python -m pip install -e .` in the repository root. The conda recipe in `conda-recipe/meta.yaml` is for local builds; BET is not yet published on conda-forge.
+
+See the manual for the minimal model and training examples.

bayesianestimationtool-1.0.0/BayesianEstimationTool.egg-info/SOURCES.txt

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+BayesianEstimationTool.py
+BayesianEstimationTool_CheatSheet.py
+LICENSE
+Method.py
+MethodValidation.py
+NutsMethod.py
+README.md
+SviMethod.py
+__init__.py
+pyproject.toml
+./BayesianEstimationTool.py
+./BayesianEstimationTool_CheatSheet.py
+./Method.py
+./MethodValidation.py
+./NutsMethod.py
+./SviMethod.py
+./__init__.py
+BayesianEstimationTool.egg-info/PKG-INFO
+BayesianEstimationTool.egg-info/SOURCES.txt
+BayesianEstimationTool.egg-info/dependency_links.txt
+BayesianEstimationTool.egg-info/requires.txt
+BayesianEstimationTool.egg-info/top_level.txt
+tests/test_custom_method.py
+tests/test_estimator_integration.py
+tests/test_estimator_validation.py
+tests/test_longitudinal_transfer.py
+tests/test_method_contract.py
+tests/test_method_validation.py
+tests/test_nuts_numerics.py
+tests/test_scientific_integration.py

bayesianestimationtool-1.0.0/BayesianEstimationTool.egg-info/dependency_links.txt

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+

bayesianestimationtool-1.0.0/BayesianEstimationTool.egg-info/requires.txt

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+jax
+numpyro
+numpy
+cloudpickle

bayesianestimationtool-1.0.0/BayesianEstimationTool.egg-info/top_level.txt

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+BayesianEstimationTool