BESS-JPL 1.16.0__tar.gz → 1.17.0__tar.gz

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  1. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/LAI_from_NDVI.py +0 -1
  2. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/load_C4_fraction.py +2 -1
  3. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/model.py +6 -1
  4. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL.egg-info/PKG-INFO +1 -1
  5. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/PKG-INFO +1 -1
  6. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/pyproject.toml +1 -1
  7. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/.github/workflows/ci.yml +0 -0
  8. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/.github/workflows/python-publish.yml +0 -0
  9. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/.gitignore +0 -0
  10. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS Sensitivity.ipynb +0 -0
  11. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/BESS_JPL.py +0 -0
  12. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/C3_photosynthesis.py +0 -0
  13. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/C4_fraction.jpeg +0 -0
  14. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/C4_fraction.tif +0 -0
  15. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/C4_photosynthesis.py +0 -0
  16. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/FVC_from_NDVI.py +0 -0
  17. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/NDVI_maximum.jpeg +0 -0
  18. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/NDVI_maximum.tif +0 -0
  19. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/NDVI_minimum.jpeg +0 -0
  20. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/NDVI_minimum.tif +0 -0
  21. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/__init__.py +0 -0
  22. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/ball_berry_intercept_C3.jpeg +0 -0
  23. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/ball_berry_intercept_C3.tif +0 -0
  24. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/ball_berry_slope_C3.jpeg +0 -0
  25. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/ball_berry_slope_C3.tif +0 -0
  26. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/ball_berry_slope_C4.jpeg +0 -0
  27. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/ball_berry_slope_C4.tif +0 -0
  28. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/calculate_VCmax.py +0 -0
  29. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/canopy_energy_balance.py +0 -0
  30. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/canopy_longwave_radiation.py +0 -0
  31. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/canopy_shortwave_radiation.py +0 -0
  32. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/carbon_uptake_efficiency.jpeg +0 -0
  33. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/carbon_uptake_efficiency.tif +0 -0
  34. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/carbon_water_fluxes.py +0 -0
  35. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/constants.py +0 -0
  36. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/interpolate_C3_C4.py +0 -0
  37. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/kn.jpeg +0 -0
  38. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/kn.tif +0 -0
  39. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/load_NDVI_maximum.py +0 -0
  40. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/load_NDVI_minimum.py +0 -0
  41. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/load_ball_berry_intercept_C3.py +0 -0
  42. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/load_ball_berry_slope_C3.py +0 -0
  43. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/load_ball_berry_slope_C4.py +0 -0
  44. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/load_carbon_uptake_efficiency.py +0 -0
  45. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/load_kn.py +0 -0
  46. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/load_peakVCmax_C3.py +0 -0
  47. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/load_peakVCmax_C4.py +0 -0
  48. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/meteorology.py +0 -0
  49. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/peakVCmax_C3.jpeg +0 -0
  50. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/peakVCmax_C3.tif +0 -0
  51. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/peakVCmax_C4.jpeg +0 -0
  52. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/peakVCmax_C4.tif +0 -0
  53. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/process_BESS_table.py +0 -0
  54. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/soil_energy_balance.py +0 -0
  55. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/version.txt +0 -0
  56. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL.egg-info/SOURCES.txt +0 -0
  57. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL.egg-info/dependency_links.txt +0 -0
  58. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL.egg-info/requires.txt +0 -0
  59. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL.egg-info/top_level.txt +0 -0
  60. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/C4 Fraction.ipynb +0 -0
  61. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/Dockerfile +0 -0
  62. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/LICENSE +0 -0
  63. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/Li_2023_RSE.pdf +0 -0
  64. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/MANIFEST.in +0 -0
  65. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/Processing BESS with rasters with default parameters.ipynb +0 -0
  66. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/Processing BESS with rasters.ipynb +0 -0
  67. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/README.md +0 -0
  68. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/makefile +0 -0
  69. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/processing_BESS_with_rasters_and_default_parameters.py +0 -0
  70. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/setup.cfg +0 -0
  71. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/tests/test_import_BESS_JPL.py +0 -0
  72. {bess_jpl-1.16.0 → bess_jpl-1.17.0}/tests/test_import_dependencies.py +0 -0
{bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/LAI_from_NDVI.py RENAMED
@@ -23,7 +23,6 @@ def LAI_from_NDVI(
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  Union[Raster, np.ndarray]: Converted LAI data.
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  """
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  fIPAR = rt.clip(NDVI - 0.05, min_fIPAR, max_fIPAR)
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- fIPAR = np.where(fIPAR == 0, np.nan, fIPAR)
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  LAI = rt.clip(-np.log(1 - fIPAR) * (1 / KPAR), min_LAI, max_LAI)
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  return LAI
{bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/load_C4_fraction.py RENAMED
@@ -9,6 +9,7 @@ def load_C4_fraction(geometry: RasterGeometry = None, resampling: str = "nearest
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  filename = join(abspath(dirname(__file__)), "C4_fraction.tif")
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  image = Raster.open(filename, geometry=geometry, resampling=resampling, nodata=np.nan)
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  image = rt.clip(image, 0, 100)
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- # TODO: scale C4_fraction to be within 0 and 1?
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+ # Scale image to be between 0 and 1
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+ image /= 100.0
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  return image
{bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/model.py RENAMED
@@ -185,7 +185,12 @@ def BESS_JPL(
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  logger.warning(f"Variable '{name}' has a different size: {size} (expected: {reference_size}).")
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  # check if any of the FLiES outputs are not given
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- if None in (Rg, VISdiff, VISdir, NIRdiff, NIRdir, UV, albedo_visible, albedo_NIR):
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+ flies_variables = [Rg, VISdiff, VISdir, NIRdiff, NIRdir, UV, albedo_visible, albedo_NIR]
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+ flies_variables_missing = False
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+ for variable in flies_variables:
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+ if variable is None:
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+ flies_variables_missing = True
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+ if flies_variables_missing:
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  # load cloud optical thickness if not provided
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  if COT is None:
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  COT = GEOS5FP_connection.COT(time_UTC=time_UTC, geometry=geometry, resampling=resampling)
{bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: BESS-JPL
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- Version: 1.16.0
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+ Version: 1.17.0
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  Summary: Breathing Earth System Simulator (BESS) Gross Primary Production (GPP) and Evapotranspiration (ET) Model Python
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  Author-email: Gregory Halverson <gregory.h.halverson@jpl.nasa.gov>
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  Project-URL: Homepage, https://github.com/JPL-Evapotranspiration-Algorithms/BESS-JPL
{bess_jpl-1.16.0 → bess_jpl-1.17.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: BESS-JPL
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- Version: 1.16.0
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+ Version: 1.17.0
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  Summary: Breathing Earth System Simulator (BESS) Gross Primary Production (GPP) and Evapotranspiration (ET) Model Python
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  Author-email: Gregory Halverson <gregory.h.halverson@jpl.nasa.gov>
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  Project-URL: Homepage, https://github.com/JPL-Evapotranspiration-Algorithms/BESS-JPL
{bess_jpl-1.16.0 → bess_jpl-1.17.0}/pyproject.toml RENAMED
@@ -3,7 +3,7 @@ requires = ["setuptools>=60", "setuptools-scm>=8.0", "wheel"]
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  [project]
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  name = "BESS-JPL"
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- version = "1.16.0"
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+ version = "1.17.0"
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  description = "Breathing Earth System Simulator (BESS) Gross Primary Production (GPP) and Evapotranspiration (ET) Model Python"
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  readme = "README.md"
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  authors = [
{bess_jpl-1.16.0 → bess_jpl-1.17.0}/.gitignore RENAMED
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{bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/kn.jpeg RENAMED
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{bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/kn.tif RENAMED
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{bess_jpl-1.16.0 → bess_jpl-1.17.0}/BESS_JPL/load_kn.py RENAMED
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{bess_jpl-1.16.0 → bess_jpl-1.17.0}/Dockerfile RENAMED
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{bess_jpl-1.16.0 → bess_jpl-1.17.0}/LICENSE RENAMED
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{bess_jpl-1.16.0 → bess_jpl-1.17.0}/Li_2023_RSE.pdf RENAMED
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{bess_jpl-1.16.0 → bess_jpl-1.17.0}/MANIFEST.in RENAMED
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{bess_jpl-1.16.0 → bess_jpl-1.17.0}/README.md RENAMED
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{bess_jpl-1.16.0 → bess_jpl-1.17.0}/makefile RENAMED
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{bess_jpl-1.16.0 → bess_jpl-1.17.0}/setup.cfg RENAMED
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