AutoMorphoTrack 2.0.0__tar.gz → 2.0.2__tar.gz

automorphotrack-2.0.2/LICENSE.md

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2025 Armin Bayati
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

automorphotrack-2.0.2/PKG-INFO

@@ -0,0 +1,133 @@
+Metadata-Version: 2.4
+Name: automorphotrack
+Version: 2.0.2
+Summary: Automated pipeline for mitochondrial and lysosomal detection, tracking, morphology, and colocalization analysis in microscopy images.
+Home-page: https://github.com/abayatibrain/AMTpackage
+Author: Armin Bayati, Ph.D.
+Author-email: a.bayati.brain@gmail.com
+License: MIT
+Project-URL: Documentation, https://github.com/abayatibrain/AMTpackage
+Project-URL: Source, https://github.com/abayatibrain/AMTpackage
+Project-URL: Tracker, https://github.com/abayatibrain/AMTpackage/issues
+Classifier: Programming Language :: Python :: 3
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Classifier: Intended Audience :: Science/Research
+Classifier: Topic :: Scientific/Engineering :: Image Processing
+Requires-Python: >=3.9
+Description-Content-Type: text/markdown
+License-File: LICENSE.md
+Requires-Dist: numpy>=1.23.0
+Requires-Dist: pandas>=1.5.0
+Requires-Dist: matplotlib>=3.6.0
+Requires-Dist: seaborn>=0.12.0
+Requires-Dist: opencv-python>=4.6.0
+Requires-Dist: scikit-image>=0.19.0
+Requires-Dist: scipy>=1.9.0
+Requires-Dist: tifffile>=2022.8.12
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: home-page
+Dynamic: license
+Dynamic: license-file
+Dynamic: project-url
+Dynamic: requires-dist
+Dynamic: requires-python
+Dynamic: summary
+
+# AutoMorphoTrack
+
+**AutoMorphoTrack** is a modular image-analysis pipeline for automated detection, morphology classification, shape profiling, motility tracking, and colocalization analysis of mitochondria and lysosomes in multichannel fluorescence microscopy data.
+
+Developed by **Armin Bayati, Ph.D.**
+
+---
+
+## 🧬 Overview
+
+AutoMorphoTrack processes time-lapse `.tif` stacks (typically two-channel: mitochondria + lysosomes) and generates publication-ready visual and quantitative outputs at every step.
+
+**Pipeline stages:**
+
+1. **Detection** – Organelle segmentation and outline visualization  
+2. **Lysosomal Counting** – Per-frame lysosome counts and plots  
+3. **Morphology Classification** – Elongated vs. punctate mitochondria  
+4. **Shape Feature Extraction** – Circularity, solidity, aspect ratio, orientation  
+5. **Shape Profiling** – Combined violin plots of mitochondrial and lysosomal metrics  
+6. **Tracking** – Cumulative organelle trajectories (mitochondria, lysosomes, composite)  
+7. **Tracking Overlay** – Tracks drawn on real-intensity images  
+8. **Motility Analysis** – Velocity and displacement distributions + scatter plots  
+9. **Colocalization** – Bright-blue overlap visualization with Manders and Pearson coefficients  
+10. **Integrated Summary** – Correlation matrix across all extracted metrics  
+
+---
+
+## 📁 Installation
+
+```bash
+pip install automorphotrack
+```
+
+Or clone directly:
+
+```bash
+git clone https://github.com/abayatibrain/AutoMorphoTrack.git
+cd AutoMorphoTrack
+pip install -e .
+```
+
+---
+
+## 🚀 Basic Usage
+
+```python
+from automorphotrack import *
+
+tif_path = "Composite.tif"
+
+detect_organelles(tif_path)
+count_lysosomes_per_frame(tif_path)
+classify_morphology(tif_path)
+analyze_shape_features(tif_path)
+profile_shape_data()
+track_organelles(tif_path)
+track_overlay(tif_path)
+analyze_motility()
+analyze_colocalization(tif_path)
+summarize_integrated_data()
+```
+
+---
+
+## 📦 Outputs
+
+| Step | Output Type | Example Files |
+|------|--------------|---------------|
+| Detection | PNG + MP4 | `Mito_Frame0.png`, `Mitochondria_Detection.mp4` |
+| Lysosome Count | PNG + CSV + MP4 | `Lyso_Count_Plot.png`, `Lysosome_Counts.csv` |
+| Morphology | PNG + MP4 + CSV | `Morphology_Frame0_Labeled.png`, `Morphology_Labeled.mp4` |
+| Shape Features | PNG + CSV | `Shape_Distributions.png`, `Mito_ShapeMetrics.csv` |
+| Shape Profiling | PNG + CSV | `Shape_ViolinPlots.png`, `Combined_ShapeData.csv` |
+| Tracking | PNG + MP4 + CSV | `Cumulative_Mito.png`, `Mito_Tracks.csv` |
+| Tracking Overlay | PNG + MP4 | `Cumulative_Composite.png`, `Composite_CumulativeTracks.mp4` |
+| Motility | PNG + CSV | `Motility_Distributions.png`, `Motility_Scatter.png` |
+| Colocalization | PNG + MP4 + CSV | `Colocalization_Frame0.png`, `Colocalization.csv` |
+| Summary | PNG + CSV | `Integrated_CorrelationMatrix.png`, `Integrated_Merged_Data.csv` |
+
+---
+
+## 🔧 Dependencies
+
+- Python ≥ 3.9  
+- numpy, pandas, matplotlib, seaborn, opencv-python, scikit-image, scipy, tifffile
+
+---
+
+## 🧩 Citation
+
+If you use this pipeline in your work, please cite:
+
+> **Bayati, A. et al.** AutoMorphoTrack: Automated Organelle Tracking and Morphometric Profiling Toolkit (2025)

automorphotrack-2.0.2/README.md

@@ -0,0 +1,93 @@
+# AutoMorphoTrack
+
+**AutoMorphoTrack** is a modular image-analysis pipeline for automated detection, morphology classification, shape profiling, motility tracking, and colocalization analysis of mitochondria and lysosomes in multichannel fluorescence microscopy data.
+
+Developed by **Armin Bayati, Ph.D.**
+
+---
+
+## 🧬 Overview
+
+AutoMorphoTrack processes time-lapse `.tif` stacks (typically two-channel: mitochondria + lysosomes) and generates publication-ready visual and quantitative outputs at every step.
+
+**Pipeline stages:**
+
+1. **Detection** – Organelle segmentation and outline visualization  
+2. **Lysosomal Counting** – Per-frame lysosome counts and plots  
+3. **Morphology Classification** – Elongated vs. punctate mitochondria  
+4. **Shape Feature Extraction** – Circularity, solidity, aspect ratio, orientation  
+5. **Shape Profiling** – Combined violin plots of mitochondrial and lysosomal metrics  
+6. **Tracking** – Cumulative organelle trajectories (mitochondria, lysosomes, composite)  
+7. **Tracking Overlay** – Tracks drawn on real-intensity images  
+8. **Motility Analysis** – Velocity and displacement distributions + scatter plots  
+9. **Colocalization** – Bright-blue overlap visualization with Manders and Pearson coefficients  
+10. **Integrated Summary** – Correlation matrix across all extracted metrics  
+
+---
+
+## 📁 Installation
+
+```bash
+pip install automorphotrack
+```
+
+Or clone directly:
+
+```bash
+git clone https://github.com/abayatibrain/AutoMorphoTrack.git
+cd AutoMorphoTrack
+pip install -e .
+```
+
+---
+
+## 🚀 Basic Usage
+
+```python
+from automorphotrack import *
+
+tif_path = "Composite.tif"
+
+detect_organelles(tif_path)
+count_lysosomes_per_frame(tif_path)
+classify_morphology(tif_path)
+analyze_shape_features(tif_path)
+profile_shape_data()
+track_organelles(tif_path)
+track_overlay(tif_path)
+analyze_motility()
+analyze_colocalization(tif_path)
+summarize_integrated_data()
+```
+
+---
+
+## 📦 Outputs
+
+| Step | Output Type | Example Files |
+|------|--------------|---------------|
+| Detection | PNG + MP4 | `Mito_Frame0.png`, `Mitochondria_Detection.mp4` |
+| Lysosome Count | PNG + CSV + MP4 | `Lyso_Count_Plot.png`, `Lysosome_Counts.csv` |
+| Morphology | PNG + MP4 + CSV | `Morphology_Frame0_Labeled.png`, `Morphology_Labeled.mp4` |
+| Shape Features | PNG + CSV | `Shape_Distributions.png`, `Mito_ShapeMetrics.csv` |
+| Shape Profiling | PNG + CSV | `Shape_ViolinPlots.png`, `Combined_ShapeData.csv` |
+| Tracking | PNG + MP4 + CSV | `Cumulative_Mito.png`, `Mito_Tracks.csv` |
+| Tracking Overlay | PNG + MP4 | `Cumulative_Composite.png`, `Composite_CumulativeTracks.mp4` |
+| Motility | PNG + CSV | `Motility_Distributions.png`, `Motility_Scatter.png` |
+| Colocalization | PNG + MP4 + CSV | `Colocalization_Frame0.png`, `Colocalization.csv` |
+| Summary | PNG + CSV | `Integrated_CorrelationMatrix.png`, `Integrated_Merged_Data.csv` |
+
+---
+
+## 🔧 Dependencies
+
+- Python ≥ 3.9  
+- numpy, pandas, matplotlib, seaborn, opencv-python, scikit-image, scipy, tifffile
+
+---
+
+## 🧩 Citation
+
+If you use this pipeline in your work, please cite:
+
+> **Bayati, A. et al.** AutoMorphoTrack: Automated Organelle Tracking and Morphometric Profiling Toolkit (2025)

{automorphotrack-2.0.0 → automorphotrack-2.0.2}/automorphotrack/__init__.py

@@ -33,7 +33,7 @@
 #     )
 # ============================================================
 
-__version__ = "2.0.0"
+__version__ = "2.0.2"
 __author__ = "Armin Bayati"
 
 # --- Utility Imports ---

{automorphotrack-2.0.0 → automorphotrack-2.0.2}/automorphotrack/colocalization.py

@@ -77,15 +77,22 @@ def analyze_colocalization(
         mito_sum.append(mito.sum())
         lyso_sum.append(lyso.sum())
 
-        # Visualization with bright-blue overlay
-        mito_norm = (mito / mito.max() * 255).astype(np.uint8)
-        lyso_norm = (lyso / lyso.max() * 255).astype(np.uint8)
+        # Visualization with CB-safe blue (mito) / orange (lyso) overlay
+        mito_norm = (mito / (mito.max() + 1e-12) * 255).astype(np.uint8)
+        lyso_norm = (lyso / (lyso.max() + 1e-12) * 255).astype(np.uint8)
         rgb = np.zeros((*mito.shape, 3), np.uint8)
-        rgb[..., 0], rgb[..., 1] = mito_norm, lyso_norm
+        # Mito → blue (1, 115, 178)
+        rgb[..., 0] = (mito_norm * (1 / 255)).astype(np.uint8)
+        rgb[..., 1] = (mito_norm * (115 / 255)).astype(np.uint8)
+        rgb[..., 2] = (mito_norm * (178 / 255)).astype(np.uint8)
+        # Lyso → orange (222, 143, 5) added on top
+        rgb[..., 0] = np.clip(rgb[..., 0].astype(int) + (lyso_norm * (222 / 255)).astype(int), 0, 255).astype(np.uint8)
+        rgb[..., 1] = np.clip(rgb[..., 1].astype(int) + (lyso_norm * (143 / 255)).astype(int), 0, 255).astype(np.uint8)
+        rgb[..., 2] = np.clip(rgb[..., 2].astype(int) + (lyso_norm * (5 / 255)).astype(int), 0, 255).astype(np.uint8)
 
         mask = overlap_mask.astype(bool)
-        bright_blue_overlay = np.full_like(rgb[mask], (0, 150, 255), dtype=np.uint8)
-        rgb[mask] = cv2.addWeighted(rgb[mask], 1 - overlay_alpha, bright_blue_overlay, overlay_alpha, 0)
+        white_overlay = np.full_like(rgb[mask], (255, 255, 255), dtype=np.uint8)
+        rgb[mask] = cv2.addWeighted(rgb[mask], 1 - overlay_alpha, white_overlay, overlay_alpha, 0)
 
         frames_out.append(upscale_frame(rgb))
 

{automorphotrack-2.0.0 → automorphotrack-2.0.2}/automorphotrack/detection.py

@@ -12,7 +12,7 @@ from automorphotrack.utils import ensure_dir, write_video, upscale_frame
 def detect_mask(frame, ch, thr_factor=0.8, min_size=3):
     """Threshold and clean a single channel."""
     img = frame[..., ch].astype(float)
-    img = (img - img.min()) / (img.ptp() + 1e-12)
+    img = (img - img.min()) / (np.ptp(img) + 1e-12)
     thr = threshold_otsu(img) * thr_factor
     mask = clear_border(binary_opening(img > thr, footprint=disk(1)))
     mask = remove_small_objects(mask, min_size)

{automorphotrack-2.0.0 → automorphotrack-2.0.2}/automorphotrack/lyso_count.py

@@ -12,7 +12,7 @@ from automorphotrack.utils import ensure_dir, write_video, upscale_frame
 def detect_mask(frame, ch, thr_factor=0.8, min_size=2):
     """Detect lysosomes in a single channel frame."""
     img = frame[..., ch].astype(float)
-    img = (img - img.min()) / (img.ptp() + 1e-12)
+    img = (img - img.min()) / (np.ptp(img) + 1e-12)
     thr = threshold_otsu(img) * thr_factor
     mask = clear_border(binary_opening(img > thr, footprint=disk(1)))
     mask = remove_small_objects(mask, min_size)

{automorphotrack-2.0.0 → automorphotrack-2.0.2}/automorphotrack/morphology.py

@@ -13,7 +13,7 @@ from automorphotrack.utils import ensure_dir, upscale_frame, save_high_dpi
 def detect_mask(frame, ch, thr_factor=0.8, min_size=10):
     """Threshold a channel to obtain clean mitochondrial mask."""
     img = frame[..., ch].astype(float)
-    img = (img - img.min()) / (img.ptp() + 1e-12)
+    img = (img - img.min()) / (np.ptp(img) + 1e-12)
     thr = threshold_otsu(img) * thr_factor
     mask = clear_border(binary_opening(img > thr, footprint=disk(1)))
     mask = remove_small_objects(mask, min_size)

{automorphotrack-2.0.0 → automorphotrack-2.0.2}/automorphotrack/shape_features.py

@@ -17,7 +17,7 @@ CB_LYSO = "#DE8F05"   # orange
 def detect_mask(frame, ch, min_size=3, thr_factor=0.8):
     """Threshold and clean a single channel."""
     img = frame[..., ch].astype(float)
-    img = (img - img.min()) / (img.ptp() + 1e-12)
+    img = (img - img.min()) / (np.ptp(img) + 1e-12)
     thr = threshold_otsu(img) * thr_factor
     mask = clear_border(binary_opening(img > thr, footprint=disk(1)))
     mask = remove_small_objects(mask, min_size)

automorphotrack-2.0.2/automorphotrack.egg-info/PKG-INFO

@@ -0,0 +1,133 @@
+Metadata-Version: 2.4
+Name: automorphotrack
+Version: 2.0.2
+Summary: Automated pipeline for mitochondrial and lysosomal detection, tracking, morphology, and colocalization analysis in microscopy images.
+Home-page: https://github.com/abayatibrain/AMTpackage
+Author: Armin Bayati, Ph.D.
+Author-email: a.bayati.brain@gmail.com
+License: MIT
+Project-URL: Documentation, https://github.com/abayatibrain/AMTpackage
+Project-URL: Source, https://github.com/abayatibrain/AMTpackage
+Project-URL: Tracker, https://github.com/abayatibrain/AMTpackage/issues
+Classifier: Programming Language :: Python :: 3
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Classifier: Intended Audience :: Science/Research
+Classifier: Topic :: Scientific/Engineering :: Image Processing
+Requires-Python: >=3.9
+Description-Content-Type: text/markdown
+License-File: LICENSE.md
+Requires-Dist: numpy>=1.23.0
+Requires-Dist: pandas>=1.5.0
+Requires-Dist: matplotlib>=3.6.0
+Requires-Dist: seaborn>=0.12.0
+Requires-Dist: opencv-python>=4.6.0
+Requires-Dist: scikit-image>=0.19.0
+Requires-Dist: scipy>=1.9.0
+Requires-Dist: tifffile>=2022.8.12
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: home-page
+Dynamic: license
+Dynamic: license-file
+Dynamic: project-url
+Dynamic: requires-dist
+Dynamic: requires-python
+Dynamic: summary
+
+# AutoMorphoTrack
+
+**AutoMorphoTrack** is a modular image-analysis pipeline for automated detection, morphology classification, shape profiling, motility tracking, and colocalization analysis of mitochondria and lysosomes in multichannel fluorescence microscopy data.
+
+Developed by **Armin Bayati, Ph.D.**
+
+---
+
+## 🧬 Overview
+
+AutoMorphoTrack processes time-lapse `.tif` stacks (typically two-channel: mitochondria + lysosomes) and generates publication-ready visual and quantitative outputs at every step.
+
+**Pipeline stages:**
+
+1. **Detection** – Organelle segmentation and outline visualization  
+2. **Lysosomal Counting** – Per-frame lysosome counts and plots  
+3. **Morphology Classification** – Elongated vs. punctate mitochondria  
+4. **Shape Feature Extraction** – Circularity, solidity, aspect ratio, orientation  
+5. **Shape Profiling** – Combined violin plots of mitochondrial and lysosomal metrics  
+6. **Tracking** – Cumulative organelle trajectories (mitochondria, lysosomes, composite)  
+7. **Tracking Overlay** – Tracks drawn on real-intensity images  
+8. **Motility Analysis** – Velocity and displacement distributions + scatter plots  
+9. **Colocalization** – Bright-blue overlap visualization with Manders and Pearson coefficients  
+10. **Integrated Summary** – Correlation matrix across all extracted metrics  
+
+---
+
+## 📁 Installation
+
+```bash
+pip install automorphotrack
+```
+
+Or clone directly:
+
+```bash
+git clone https://github.com/abayatibrain/AutoMorphoTrack.git
+cd AutoMorphoTrack
+pip install -e .
+```
+
+---
+
+## 🚀 Basic Usage
+
+```python
+from automorphotrack import *
+
+tif_path = "Composite.tif"
+
+detect_organelles(tif_path)
+count_lysosomes_per_frame(tif_path)
+classify_morphology(tif_path)
+analyze_shape_features(tif_path)
+profile_shape_data()
+track_organelles(tif_path)
+track_overlay(tif_path)
+analyze_motility()
+analyze_colocalization(tif_path)
+summarize_integrated_data()
+```
+
+---
+
+## 📦 Outputs
+
+| Step | Output Type | Example Files |
+|------|--------------|---------------|
+| Detection | PNG + MP4 | `Mito_Frame0.png`, `Mitochondria_Detection.mp4` |
+| Lysosome Count | PNG + CSV + MP4 | `Lyso_Count_Plot.png`, `Lysosome_Counts.csv` |
+| Morphology | PNG + MP4 + CSV | `Morphology_Frame0_Labeled.png`, `Morphology_Labeled.mp4` |
+| Shape Features | PNG + CSV | `Shape_Distributions.png`, `Mito_ShapeMetrics.csv` |
+| Shape Profiling | PNG + CSV | `Shape_ViolinPlots.png`, `Combined_ShapeData.csv` |
+| Tracking | PNG + MP4 + CSV | `Cumulative_Mito.png`, `Mito_Tracks.csv` |
+| Tracking Overlay | PNG + MP4 | `Cumulative_Composite.png`, `Composite_CumulativeTracks.mp4` |
+| Motility | PNG + CSV | `Motility_Distributions.png`, `Motility_Scatter.png` |
+| Colocalization | PNG + MP4 + CSV | `Colocalization_Frame0.png`, `Colocalization.csv` |
+| Summary | PNG + CSV | `Integrated_CorrelationMatrix.png`, `Integrated_Merged_Data.csv` |
+
+---
+
+## 🔧 Dependencies
+
+- Python ≥ 3.9  
+- numpy, pandas, matplotlib, seaborn, opencv-python, scikit-image, scipy, tifffile
+
+---
+
+## 🧩 Citation
+
+If you use this pipeline in your work, please cite:
+
+> **Bayati, A. et al.** AutoMorphoTrack: Automated Organelle Tracking and Morphometric Profiling Toolkit (2025)

{automorphotrack-2.0.0 → automorphotrack-2.0.2}/automorphotrack.egg-info/SOURCES.txt

@@ -1,4 +1,6 @@
+LICENSE.md
 MANIFEST.in
+README.md
 pyproject.toml
 setup.py
 automorphotrack/.___init__.py

{automorphotrack-2.0.0 → automorphotrack-2.0.2}/setup.py

@@ -10,7 +10,7 @@ if os.path.exists(readme_path):
 
 setup(
     name="automorphotrack",
-    version="2.0.0",
+    version="2.0.2",
     author="Armin Bayati, Ph.D.",
     author_email="a.bayati.brain@gmail.com",
     description="Automated pipeline for mitochondrial and lysosomal detection, tracking, morphology, and colocalization analysis in microscopy images.",

automorphotrack-2.0.0/PKG-INFO

@@ -1,36 +0,0 @@
-Metadata-Version: 2.4
-Name: automorphotrack
-Version: 2.0.0
-Summary: Automated pipeline for mitochondrial and lysosomal detection, tracking, morphology, and colocalization analysis in microscopy images.
-Home-page: https://github.com/abayatibrain/AMTpackage
-Author: Armin Bayati, Ph.D.
-Author-email: a.bayati.brain@gmail.com
-License: MIT
-Project-URL: Documentation, https://github.com/abayatibrain/AMTpackage
-Project-URL: Source, https://github.com/abayatibrain/AMTpackage
-Project-URL: Tracker, https://github.com/abayatibrain/AMTpackage/issues
-Classifier: Programming Language :: Python :: 3
-Classifier: License :: OSI Approved :: MIT License
-Classifier: Operating System :: OS Independent
-Classifier: Intended Audience :: Science/Research
-Classifier: Topic :: Scientific/Engineering :: Image Processing
-Requires-Python: >=3.9
-Description-Content-Type: text/markdown
-Requires-Dist: numpy>=1.23.0
-Requires-Dist: pandas>=1.5.0
-Requires-Dist: matplotlib>=3.6.0
-Requires-Dist: seaborn>=0.12.0
-Requires-Dist: opencv-python>=4.6.0
-Requires-Dist: scikit-image>=0.19.0
-Requires-Dist: scipy>=1.9.0
-Requires-Dist: tifffile>=2022.8.12
-Dynamic: author
-Dynamic: author-email
-Dynamic: classifier
-Dynamic: description-content-type
-Dynamic: home-page
-Dynamic: license
-Dynamic: project-url
-Dynamic: requires-dist
-Dynamic: requires-python
-Dynamic: summary

automorphotrack-2.0.0/automorphotrack.egg-info/PKG-INFO

@@ -1,36 +0,0 @@
-Metadata-Version: 2.4
-Name: automorphotrack
-Version: 2.0.0
-Summary: Automated pipeline for mitochondrial and lysosomal detection, tracking, morphology, and colocalization analysis in microscopy images.
-Home-page: https://github.com/abayatibrain/AMTpackage
-Author: Armin Bayati, Ph.D.
-Author-email: a.bayati.brain@gmail.com
-License: MIT
-Project-URL: Documentation, https://github.com/abayatibrain/AMTpackage
-Project-URL: Source, https://github.com/abayatibrain/AMTpackage
-Project-URL: Tracker, https://github.com/abayatibrain/AMTpackage/issues
-Classifier: Programming Language :: Python :: 3
-Classifier: License :: OSI Approved :: MIT License
-Classifier: Operating System :: OS Independent
-Classifier: Intended Audience :: Science/Research
-Classifier: Topic :: Scientific/Engineering :: Image Processing
-Requires-Python: >=3.9
-Description-Content-Type: text/markdown
-Requires-Dist: numpy>=1.23.0
-Requires-Dist: pandas>=1.5.0
-Requires-Dist: matplotlib>=3.6.0
-Requires-Dist: seaborn>=0.12.0
-Requires-Dist: opencv-python>=4.6.0
-Requires-Dist: scikit-image>=0.19.0
-Requires-Dist: scipy>=1.9.0
-Requires-Dist: tifffile>=2022.8.12
-Dynamic: author
-Dynamic: author-email
-Dynamic: classifier
-Dynamic: description-content-type
-Dynamic: home-page
-Dynamic: license
-Dynamic: project-url
-Dynamic: requires-dist
-Dynamic: requires-python
-Dynamic: summary