ARCtrl 3.2.2__tar.gz → 3.3.0__tar.gz

{arctrl-3.2.2 → arctrl-3.3.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: arctrl
-Version: 3.2.2
+Version: 3.3.0
 Summary: Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems.
 License-File: LICENSE
 Keywords: arc,annotated research context,isa,research data,multi platform
@@ -13,7 +13,7 @@ Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
 Classifier: Programming Language :: Python :: 3.14
 Classifier: Programming Language :: Python :: 3.15
-Requires-Dist: fable-library (==5.18.0)
+Requires-Dist: fable-library (==5.26.0)
 Requires-Dist: openpyxl (>=3.1.5,<4)
 Requires-Dist: requests (>=2.28.1,<3.0.0)
 Project-URL: Repository, https://github.com/nfdi4plants/ARCtrl
@@ -62,70 +62,6 @@ pip install arctrl
 
 Documentation can be found [here](https://nfdi4plants.github.io/nfdi4plants.knowledgebase/arctrl/)
 
-## Development
-
-#### Requirements
-
-- [nodejs and npm](https://nodejs.org/en/download)
-    - verify with `node --version` (Tested with v18.16.1)
-    - verify with `npm --version` (Tested with v9.2.0)
-- [.NET SDK](https://dotnet.microsoft.com/en-us/download)
-    - verify with `dotnet --version` (Tested with 7.0.306)
-- [Python](https://www.python.org/downloads/)
-    - verify with `py --version` (Tested with 3.12.2, known to work only for >=3.11)
-
-#### Local Setup
-
-##### Windows
-
-On windows you can use the `setup.cmd` to run the following steps automatically!
-
-1. Setup dotnet tools
-
-   `dotnet tool restore`
-
-
-2. Install NPM dependencies
-
-    `npm install`
-
-3. Setup python environment
-
-    `py -m venv .venv`
-
-4. Install [uv](https://docs.astral.sh/uv/) and dependencies
-
-   1. `.\.venv\Scripts\python.exe -m pip install -U pip setuptools`
-   2. `.\.venv\Scripts\python.exe -m pip install uv`
-   3. `.\.venv\Scripts\python.exe -m uv pip install -r pyproject.toml --group dev`
-
-Verify correct setup with `./build.cmd runtests` ✨
-
-##### Linux / macOS
-
-On unix you can use the `setup.sh` to run the following steps automatically!
-
-1. Setup dotnet tools
-
-   `dotnet tool restore`
-
-
-2. Install NPM dependencies
-
-    `npm install`
-
-3. Setup python environment
-
-    `python -m venv .venv`
-
-4. Install [uv](https://docs.astral.sh/uv/) and dependencies
-
-   1. `.venv/bin/python -m pip install -U pip setuptools`
-   2. `.venv/bin/python -m pip install uv`
-   3. `.venv/bin/python -m uv pip install -r pyproject.toml --group dev`
-
-Verify correct setup with `bash build.sh runtests` ✨
-
 ## Branding
 
 Feel free to reference `ARCtrl` on slides or elsewhere using our logos:

{arctrl-3.2.2 → arctrl-3.3.0}/README.md

@@ -41,70 +41,6 @@ pip install arctrl
 
 Documentation can be found [here](https://nfdi4plants.github.io/nfdi4plants.knowledgebase/arctrl/)
 
-## Development
-
-#### Requirements
-
-- [nodejs and npm](https://nodejs.org/en/download)
-    - verify with `node --version` (Tested with v18.16.1)
-    - verify with `npm --version` (Tested with v9.2.0)
-- [.NET SDK](https://dotnet.microsoft.com/en-us/download)
-    - verify with `dotnet --version` (Tested with 7.0.306)
-- [Python](https://www.python.org/downloads/)
-    - verify with `py --version` (Tested with 3.12.2, known to work only for >=3.11)
-
-#### Local Setup
-
-##### Windows
-
-On windows you can use the `setup.cmd` to run the following steps automatically!
-
-1. Setup dotnet tools
-
-   `dotnet tool restore`
-
-
-2. Install NPM dependencies
-
-    `npm install`
-
-3. Setup python environment
-
-    `py -m venv .venv`
-
-4. Install [uv](https://docs.astral.sh/uv/) and dependencies
-
-   1. `.\.venv\Scripts\python.exe -m pip install -U pip setuptools`
-   2. `.\.venv\Scripts\python.exe -m pip install uv`
-   3. `.\.venv\Scripts\python.exe -m uv pip install -r pyproject.toml --group dev`
-
-Verify correct setup with `./build.cmd runtests` ✨
-
-##### Linux / macOS
-
-On unix you can use the `setup.sh` to run the following steps automatically!
-
-1. Setup dotnet tools
-
-   `dotnet tool restore`
-
-
-2. Install NPM dependencies
-
-    `npm install`
-
-3. Setup python environment
-
-    `python -m venv .venv`
-
-4. Install [uv](https://docs.astral.sh/uv/) and dependencies
-
-   1. `.venv/bin/python -m pip install -U pip setuptools`
-   2. `.venv/bin/python -m pip install uv`
-   3. `.venv/bin/python -m uv pip install -r pyproject.toml --group dev`
-
-Verify correct setup with `bash build.sh runtests` ✨
-
 ## Branding
 
 Feel free to reference `ARCtrl` on slides or elsewhere using our logos:

{arctrl-3.2.2 → arctrl-3.3.0}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "arctrl"
-version = "3.2.2"
+version = "3.3.0"
 description = "Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems."
 authors = [
     { name = "Heinrich Lukas Weil", email = "weil@rptu.de" },
@@ -19,7 +19,7 @@ keywords = [
 dependencies = [
     "requests>= 2.28.1, <3.0.0",
     "openpyxl>=3.1.5,<4",
-    "fable-library==5.18.0"
+    "fable-library==5.26.0"
 ]
 
 [project.urls]

{arctrl-3.2.2 → arctrl-3.3.0}/src/ARCtrl/__init__.py

@@ -3,9 +3,14 @@ from collections.abc import Callable
 from typing import Any
 from .py.Contract.contract import Contract, _DTO as DTO, _DTOType as DTOType, DTO_Spreadsheet, DTO_Text, DTO_CLITool
 from .py.Core.data_context import DataContext
+from .py.Core.data import Data
+from .py.Core.data_file import _DataFile as DataFile
+from .py.Core.Process.component import Component
+from .py.Core.scalar_value import _ScalarValue as ScalarValue
 from .py.Core.datamap import Datamap
-from .py.Core.comment import Comment
+from .py.Core.comment import Comment, Remark
 from .py.Core.ontology_annotation import OntologyAnnotation
+from .py.Core.ontology_source_reference import OntologySourceReference
 from .py.Core.person import Person
 from .py.Core.publication import Publication
 # Unions are transpiled into an implementation class holding the members and a
@@ -18,9 +23,11 @@ from .py.Core.Table.composite_column import CompositeColumn
 from .py.Core.Table.arc_table import ArcTable
 from .py.Core.Table.arc_tables import ArcTables
 from .py.Core.arc_types import ArcAssay, ArcStudy, ArcRun, ArcWorkflow, ArcInvestigation
-from .py.Core.template import Template
+from .py.Core.template import Template, _Organisation as Organisation
 from .py.FileSystem.file_system import FileSystem
 from .py.FileSystem.file_system_tree import _FileSystemTree as FileSystemTree
+from .py.FileSystem.commit import Commit
+from .py.license import License
 from .py.json import JsonController
 from .py.yaml import YamlController
 from .py.xlsx import XlsxController

arctrl-3.3.0/src/ARCtrl/cwl.py

@@ -0,0 +1,29 @@
+from __future__ import annotations
+from collections.abc import Callable
+from typing import Any
+# Unions are transpiled into an implementation class holding the members and a
+# type alias over the case classes. The public name has to be the implementation
+# class, otherwise members and `isinstance` are unavailable. See ARCtrl/__init__.py.
+from .py.CWL.cwlprocessing_unit import _CWLProcessingUnit as CWLProcessingUnit
+from .py.CWL.cwltypes import _CWLType as CWLType, _SchemaSaladString as SchemaSaladString, _SchemaSaladBool as SchemaSaladBool, _FileSize as FileSize, _DocText as DocText, _ListEntry_1 as ListEntry, FileInstance, DirectoryInstance, DirentInstance, InputEnumSchema, InputRecordField, InputRecordSchema, InputArraySchema, _SchemaDefinition as SchemaDefinition, SoftwarePackage
+from .py.CWL.parameter_value import _CWLParameterValue as CWLParameterValue, CWLParameterRecordField
+from .py.CWL.parameter_reference import CWLParameterReference
+from .py.CWL.inputs import CWLInput, InputBinding, _InputFormat as InputFormat, _BindingPosition as BindingPosition
+from .py.CWL.outputs import CWLOutput, OutputBinding, _OutputSource as OutputSource, _OutputGlob as OutputGlob
+from .py.CWL.tool_description import CWLToolDescription
+from .py.CWL.workflow_description import CWLWorkflowDescription
+from .py.CWL.expression_tool_description import CWLExpressionToolDescription
+from .py.CWL.operation_description import CWLOperationDescription
+from .py.CWL.workflow_steps import (
+    WorkflowStep, ResolvedRun, StepInput, _StepOutput as StepOutput, StepOutputParameter,
+    _WorkflowStepRun as WorkflowStepRun, _LinkMergeMethod as LinkMergeMethod,
+    _PickValueMethod as PickValueMethod, _ScatterMethod as ScatterMethod,
+)
+from .py.CWL.requirements import (
+    _Requirement as Requirement, _SchemaDefEntry as SchemaDefEntry, DockerRequirement, EnvironmentDef, ResourceRequirementInstance,
+    _HintEntry as HintEntry, HintUnknownValue, _InitialWorkDirEntry as InitialWorkDirEntry,
+    InlineJavascriptRequirementValue, InplaceUpdateRequirementValue,
+    _LoadListingEnum as LoadListingEnum, LoadListingRequirementValue,
+    NetworkAccessRequirementValue, _ToolTimeLimitValue as ToolTimeLimitValue,
+    WorkReuseRequirementValue,
+)

{arctrl-3.2.2 → arctrl-3.3.0}/src/ARCtrl/py/CWL/cwlknown_field_names.py

@@ -7,215 +7,201 @@ module-level values compile consistently across .NET, JavaScript, and Python.
 from fable_library.set import (of_seq, FSharpSet)
 from fable_library.util import (to_enumerable, compare_primitives, UNIT)
 
-class ObjectExpr852:
+class ObjectExpr878:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-file_instance: FSharpSet[str] = of_seq(to_enumerable(["class", "type", "location", "path", "basename", "dirname", "nameroot", "nameext", "checksum", "size", "secondaryFiles", "format", "contents"]), ObjectExpr852())
+file_instance: FSharpSet[str] = of_seq(to_enumerable(["class", "type", "location", "path", "basename", "dirname", "nameroot", "nameext", "checksum", "size", "secondaryFiles", "format", "contents"]), ObjectExpr878())
 
-class ObjectExpr853:
-    def Compare(self, x: str, y: str) -> int:
-        return compare_primitives(x, y)
-
-
-directory_instance: FSharpSet[str] = of_seq(to_enumerable(["class", "type", "location", "path", "basename", "listing"]), ObjectExpr853())
-
-class ObjectExpr854:
-    def Compare(self, x: str, y: str) -> int:
-        return compare_primitives(x, y)
-
-
-dirent_instance: FSharpSet[str] = of_seq(to_enumerable(["entry", "entryname", "writable"]), ObjectExpr854())
-
-class ObjectExpr855:
+class ObjectExpr879:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-input_enum_schema: FSharpSet[str] = of_seq(to_enumerable(["type", "symbols", "label", "doc", "name"]), ObjectExpr855())
+directory_instance: FSharpSet[str] = of_seq(to_enumerable(["class", "type", "location", "path", "basename", "listing"]), ObjectExpr879())
 
-class ObjectExpr856:
+class ObjectExpr880:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-input_record_field: FSharpSet[str] = of_seq(to_enumerable(["name", "type", "doc", "label"]), ObjectExpr856())
+dirent_instance: FSharpSet[str] = of_seq(to_enumerable(["entry", "entryname", "writable"]), ObjectExpr880())
 
-class ObjectExpr857:
+class ObjectExpr881:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-input_record_schema: FSharpSet[str] = of_seq(to_enumerable(["type", "fields", "label", "doc", "name"]), ObjectExpr857())
+input_enum_schema: FSharpSet[str] = of_seq(to_enumerable(["type", "symbols", "label", "doc", "name"]), ObjectExpr881())
 
-class ObjectExpr858:
+class ObjectExpr882:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-input_array_schema: FSharpSet[str] = of_seq(to_enumerable(["type", "items", "label", "doc", "name"]), ObjectExpr858())
+input_record_field: FSharpSet[str] = of_seq(to_enumerable(["name", "type", "doc", "label"]), ObjectExpr882())
 
-class ObjectExpr859:
+class ObjectExpr883:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-schema_def_requirement_type: FSharpSet[str] = of_seq(to_enumerable(["name", "type"]), ObjectExpr859())
+input_record_schema: FSharpSet[str] = of_seq(to_enumerable(["type", "fields", "label", "doc", "name"]), ObjectExpr883())
 
-class ObjectExpr860:
+class ObjectExpr884:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-software_package: FSharpSet[str] = of_seq(to_enumerable(["package", "version", "specs"]), ObjectExpr860())
+input_array_schema: FSharpSet[str] = of_seq(to_enumerable(["type", "items", "label", "doc", "name"]), ObjectExpr884())
 
-class ObjectExpr862:
+class ObjectExpr885:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-input_binding: FSharpSet[str] = of_seq(to_enumerable(["loadContents", "position", "prefix", "separate", "itemSeparator", "valueFrom", "shellQuote"]), ObjectExpr862())
+software_package: FSharpSet[str] = of_seq(to_enumerable(["package", "version", "specs"]), ObjectExpr885())
 
-class ObjectExpr864:
+class ObjectExpr886:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-cwl_input: FSharpSet[str] = of_seq(to_enumerable(["id", "type", "label", "secondaryFiles", "streamable", "doc", "format", "loadContents", "loadListing", "default", "inputBinding"]), ObjectExpr864())
+input_binding: FSharpSet[str] = of_seq(to_enumerable(["loadContents", "position", "prefix", "separate", "itemSeparator", "valueFrom", "shellQuote"]), ObjectExpr886())
 
-class ObjectExpr865:
+class ObjectExpr887:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-output_binding: FSharpSet[str] = of_seq(to_enumerable(["loadContents", "loadListing", "glob", "outputEval"]), ObjectExpr865())
+cwl_input: FSharpSet[str] = of_seq(to_enumerable(["id", "type", "label", "secondaryFiles", "streamable", "doc", "format", "loadContents", "loadListing", "default", "inputBinding"]), ObjectExpr887())
 
-class ObjectExpr866:
+class ObjectExpr888:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-cwl_output: FSharpSet[str] = of_seq(to_enumerable(["id", "type", "label", "secondaryFiles", "streamable", "doc", "format", "outputBinding", "outputSource"]), ObjectExpr866())
+output_binding: FSharpSet[str] = of_seq(to_enumerable(["loadContents", "loadListing", "glob", "outputEval"]), ObjectExpr888())
 
-class ObjectExpr867:
+class ObjectExpr889:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-docker_requirement: FSharpSet[str] = of_seq(to_enumerable(["class", "dockerPull", "dockerFile", "dockerImageId", "dockerLoad", "dockerImport", "dockerOutputDirectory", "cwltool:dockerRunOptions"]), ObjectExpr867())
+cwl_output: FSharpSet[str] = of_seq(to_enumerable(["id", "type", "label", "secondaryFiles", "streamable", "doc", "format", "outputBinding", "outputSource"]), ObjectExpr889())
 
-class ObjectExpr868:
+class ObjectExpr890:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-environment_def: FSharpSet[str] = of_seq(to_enumerable(["envName", "envValue"]), ObjectExpr868())
+docker_requirement: FSharpSet[str] = of_seq(to_enumerable(["class", "dockerPull", "dockerFile", "dockerImageId", "dockerLoad", "dockerImport", "dockerOutputDirectory", "cwltool:dockerRunOptions"]), ObjectExpr890())
 
-class ObjectExpr869:
+class ObjectExpr891:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-load_listing_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "loadListing"]), ObjectExpr869())
+environment_def: FSharpSet[str] = of_seq(to_enumerable(["envName", "envValue"]), ObjectExpr891())
 
-class ObjectExpr871:
+class ObjectExpr892:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-work_reuse_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "enableReuse"]), ObjectExpr871())
+load_listing_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "loadListing"]), ObjectExpr892())
 
-class ObjectExpr872:
+class ObjectExpr893:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-network_access_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "networkAccess"]), ObjectExpr872())
+work_reuse_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "enableReuse"]), ObjectExpr893())
 
-class ObjectExpr873:
+class ObjectExpr894:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-inplace_update_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "inplaceUpdate"]), ObjectExpr873())
+network_access_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "networkAccess"]), ObjectExpr894())
 
-class ObjectExpr875:
+class ObjectExpr895:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-resource_requirement_instance: FSharpSet[str] = of_seq(to_enumerable(["class", "coresMin", "coresMax", "ramMin", "ramMax", "tmpdirMin", "tmpdirMax", "outdirMin", "outdirMax"]), ObjectExpr875())
+inplace_update_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "inplaceUpdate"]), ObjectExpr895())
 
-class ObjectExpr876:
+class ObjectExpr896:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-inline_javascript_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "expressionLib"]), ObjectExpr876())
+resource_requirement_instance: FSharpSet[str] = of_seq(to_enumerable(["class", "coresMin", "coresMax", "ramMin", "ramMax", "tmpdirMin", "tmpdirMax", "outdirMin", "outdirMax"]), ObjectExpr896())
 
-class ObjectExpr877:
+class ObjectExpr897:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-hint_unknown_value: FSharpSet[str] = of_seq(to_enumerable(["class", "raw"]), ObjectExpr877())
+inline_javascript_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "expressionLib"]), ObjectExpr897())
 
-class ObjectExpr879:
+class ObjectExpr898:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-tool_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "class", "id", "label", "doc", "intent", "requirements", "hints", "cwlVersion", "baseCommand", "arguments", "stdin", "stderr", "stdout", "successCodes", "temporaryFailCodes", "permanentFailCodes"]), ObjectExpr879())
+hint_unknown_value: FSharpSet[str] = of_seq(to_enumerable(["class", "raw"]), ObjectExpr898())
 
-class ObjectExpr881:
+class ObjectExpr899:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-expression_tool_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "class", "id", "label", "doc", "intent", "requirements", "hints", "cwlVersion", "expression"]), ObjectExpr881())
+tool_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "class", "id", "label", "doc", "intent", "requirements", "hints", "cwlVersion", "baseCommand", "arguments", "stdin", "stderr", "stdout", "successCodes", "temporaryFailCodes", "permanentFailCodes"]), ObjectExpr899())
 
-class ObjectExpr882:
+class ObjectExpr900:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-operation_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "label", "doc", "intent", "class", "id", "requirements", "hints", "cwlVersion"]), ObjectExpr882())
+expression_tool_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "class", "id", "label", "doc", "intent", "requirements", "hints", "cwlVersion", "expression"]), ObjectExpr900())
 
-class ObjectExpr883:
+class ObjectExpr901:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-workflow_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "label", "doc", "intent", "class", "steps", "id", "requirements", "hints", "cwlVersion"]), ObjectExpr883())
+operation_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "label", "doc", "intent", "class", "id", "requirements", "hints", "cwlVersion"]), ObjectExpr901())
 
-class ObjectExpr884:
+class ObjectExpr902:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-step_input: FSharpSet[str] = of_seq(to_enumerable(["id", "source", "default", "valueFrom", "linkMerge", "pickValue", "doc", "loadContents", "loadListing", "label"]), ObjectExpr884())
+workflow_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "label", "doc", "intent", "class", "steps", "id", "requirements", "hints", "cwlVersion"]), ObjectExpr902())
 
-class ObjectExpr885:
+class ObjectExpr903:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-step_output_parameter: FSharpSet[str] = of_seq(to_enumerable(["id"]), ObjectExpr885())
+step_input: FSharpSet[str] = of_seq(to_enumerable(["id", "source", "default", "valueFrom", "linkMerge", "pickValue", "doc", "loadContents", "loadListing", "label"]), ObjectExpr903())
 
-class ObjectExpr886:
+class ObjectExpr904:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-workflow_step: FSharpSet[str] = of_seq(to_enumerable(["id", "run", "in", "out", "requirements", "hints", "label", "doc", "scatter", "scatterMethod", "when"]), ObjectExpr886())
+step_output_parameter: FSharpSet[str] = of_seq(to_enumerable(["id"]), ObjectExpr904())
 
-class ObjectExpr887:
+class ObjectExpr905:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-parameter_reference: FSharpSet[str] = of_seq(to_enumerable(["class", "path", "location", "type", "value"]), ObjectExpr887())
+workflow_step: FSharpSet[str] = of_seq(to_enumerable(["id", "run", "in", "out", "requirements", "hints", "label", "doc", "scatter", "scatterMethod", "when"]), ObjectExpr905())
 
-__all__ = ["cwl_input", "cwl_output", "directory_instance", "dirent_instance", "docker_requirement", "environment_def", "expression_tool_description", "file_instance", "hint_unknown_value", "inline_javascript_requirement_value", "inplace_update_requirement_value", "input_array_schema", "input_binding", "input_enum_schema", "input_record_field", "input_record_schema", "load_listing_requirement_value", "network_access_requirement_value", "operation_description", "output_binding", "parameter_reference", "resource_requirement_instance", "schema_def_requirement_type", "software_package", "step_input", "step_output_parameter", "tool_description", "work_reuse_requirement_value", "workflow_description", "workflow_step"]
+__all__ = ["cwl_input", "cwl_output", "directory_instance", "dirent_instance", "docker_requirement", "environment_def", "expression_tool_description", "file_instance", "hint_unknown_value", "inline_javascript_requirement_value", "inplace_update_requirement_value", "input_array_schema", "input_binding", "input_enum_schema", "input_record_field", "input_record_schema", "load_listing_requirement_value", "network_access_requirement_value", "operation_description", "output_binding", "resource_requirement_instance", "software_package", "step_input", "step_output_parameter", "tool_description", "work_reuse_requirement_value", "workflow_description", "workflow_step"]