ARCtrl 3.2.2__tar.gz → 3.2.3__tar.gz

{arctrl-3.2.2 → arctrl-3.2.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: arctrl
-Version: 3.2.2
+Version: 3.2.3
 Summary: Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems.
 License-File: LICENSE
 Keywords: arc,annotated research context,isa,research data,multi platform
@@ -62,70 +62,6 @@ pip install arctrl
 
 Documentation can be found [here](https://nfdi4plants.github.io/nfdi4plants.knowledgebase/arctrl/)
 
-## Development
-
-#### Requirements
-
-- [nodejs and npm](https://nodejs.org/en/download)
-    - verify with `node --version` (Tested with v18.16.1)
-    - verify with `npm --version` (Tested with v9.2.0)
-- [.NET SDK](https://dotnet.microsoft.com/en-us/download)
-    - verify with `dotnet --version` (Tested with 7.0.306)
-- [Python](https://www.python.org/downloads/)
-    - verify with `py --version` (Tested with 3.12.2, known to work only for >=3.11)
-
-#### Local Setup
-
-##### Windows
-
-On windows you can use the `setup.cmd` to run the following steps automatically!
-
-1. Setup dotnet tools
-
-   `dotnet tool restore`
-
-
-2. Install NPM dependencies
-
-    `npm install`
-
-3. Setup python environment
-
-    `py -m venv .venv`
-
-4. Install [uv](https://docs.astral.sh/uv/) and dependencies
-
-   1. `.\.venv\Scripts\python.exe -m pip install -U pip setuptools`
-   2. `.\.venv\Scripts\python.exe -m pip install uv`
-   3. `.\.venv\Scripts\python.exe -m uv pip install -r pyproject.toml --group dev`
-
-Verify correct setup with `./build.cmd runtests` ✨
-
-##### Linux / macOS
-
-On unix you can use the `setup.sh` to run the following steps automatically!
-
-1. Setup dotnet tools
-
-   `dotnet tool restore`
-
-
-2. Install NPM dependencies
-
-    `npm install`
-
-3. Setup python environment
-
-    `python -m venv .venv`
-
-4. Install [uv](https://docs.astral.sh/uv/) and dependencies
-
-   1. `.venv/bin/python -m pip install -U pip setuptools`
-   2. `.venv/bin/python -m pip install uv`
-   3. `.venv/bin/python -m uv pip install -r pyproject.toml --group dev`
-
-Verify correct setup with `bash build.sh runtests` ✨
-
 ## Branding
 
 Feel free to reference `ARCtrl` on slides or elsewhere using our logos:

{arctrl-3.2.2 → arctrl-3.2.3}/README.md

@@ -41,70 +41,6 @@ pip install arctrl
 
 Documentation can be found [here](https://nfdi4plants.github.io/nfdi4plants.knowledgebase/arctrl/)
 
-## Development
-
-#### Requirements
-
-- [nodejs and npm](https://nodejs.org/en/download)
-    - verify with `node --version` (Tested with v18.16.1)
-    - verify with `npm --version` (Tested with v9.2.0)
-- [.NET SDK](https://dotnet.microsoft.com/en-us/download)
-    - verify with `dotnet --version` (Tested with 7.0.306)
-- [Python](https://www.python.org/downloads/)
-    - verify with `py --version` (Tested with 3.12.2, known to work only for >=3.11)
-
-#### Local Setup
-
-##### Windows
-
-On windows you can use the `setup.cmd` to run the following steps automatically!
-
-1. Setup dotnet tools
-
-   `dotnet tool restore`
-
-
-2. Install NPM dependencies
-
-    `npm install`
-
-3. Setup python environment
-
-    `py -m venv .venv`
-
-4. Install [uv](https://docs.astral.sh/uv/) and dependencies
-
-   1. `.\.venv\Scripts\python.exe -m pip install -U pip setuptools`
-   2. `.\.venv\Scripts\python.exe -m pip install uv`
-   3. `.\.venv\Scripts\python.exe -m uv pip install -r pyproject.toml --group dev`
-
-Verify correct setup with `./build.cmd runtests` ✨
-
-##### Linux / macOS
-
-On unix you can use the `setup.sh` to run the following steps automatically!
-
-1. Setup dotnet tools
-
-   `dotnet tool restore`
-
-
-2. Install NPM dependencies
-
-    `npm install`
-
-3. Setup python environment
-
-    `python -m venv .venv`
-
-4. Install [uv](https://docs.astral.sh/uv/) and dependencies
-
-   1. `.venv/bin/python -m pip install -U pip setuptools`
-   2. `.venv/bin/python -m pip install uv`
-   3. `.venv/bin/python -m uv pip install -r pyproject.toml --group dev`
-
-Verify correct setup with `bash build.sh runtests` ✨
-
 ## Branding
 
 Feel free to reference `ARCtrl` on slides or elsewhere using our logos:

{arctrl-3.2.2 → arctrl-3.2.3}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "arctrl"
-version = "3.2.2"
+version = "3.2.3"
 description = "Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems."
 authors = [
     { name = "Heinrich Lukas Weil", email = "weil@rptu.de" },

{arctrl-3.2.2 → arctrl-3.2.3}/src/ARCtrl/py/CWL/cwlknown_field_names.py

@@ -7,215 +7,215 @@ module-level values compile consistently across .NET, JavaScript, and Python.
 from fable_library.set import (of_seq, FSharpSet)
 from fable_library.util import (to_enumerable, compare_primitives, UNIT)
 
-class ObjectExpr852:
+class ObjectExpr821:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-file_instance: FSharpSet[str] = of_seq(to_enumerable(["class", "type", "location", "path", "basename", "dirname", "nameroot", "nameext", "checksum", "size", "secondaryFiles", "format", "contents"]), ObjectExpr852())
+file_instance: FSharpSet[str] = of_seq(to_enumerable(["class", "type", "location", "path", "basename", "dirname", "nameroot", "nameext", "checksum", "size", "secondaryFiles", "format", "contents"]), ObjectExpr821())
 
-class ObjectExpr853:
+class ObjectExpr823:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-directory_instance: FSharpSet[str] = of_seq(to_enumerable(["class", "type", "location", "path", "basename", "listing"]), ObjectExpr853())
+directory_instance: FSharpSet[str] = of_seq(to_enumerable(["class", "type", "location", "path", "basename", "listing"]), ObjectExpr823())
 
-class ObjectExpr854:
+class ObjectExpr824:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-dirent_instance: FSharpSet[str] = of_seq(to_enumerable(["entry", "entryname", "writable"]), ObjectExpr854())
+dirent_instance: FSharpSet[str] = of_seq(to_enumerable(["entry", "entryname", "writable"]), ObjectExpr824())
 
-class ObjectExpr855:
+class ObjectExpr825:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-input_enum_schema: FSharpSet[str] = of_seq(to_enumerable(["type", "symbols", "label", "doc", "name"]), ObjectExpr855())
+input_enum_schema: FSharpSet[str] = of_seq(to_enumerable(["type", "symbols", "label", "doc", "name"]), ObjectExpr825())
 
-class ObjectExpr856:
+class ObjectExpr826:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-input_record_field: FSharpSet[str] = of_seq(to_enumerable(["name", "type", "doc", "label"]), ObjectExpr856())
+input_record_field: FSharpSet[str] = of_seq(to_enumerable(["name", "type", "doc", "label"]), ObjectExpr826())
 
-class ObjectExpr857:
+class ObjectExpr827:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-input_record_schema: FSharpSet[str] = of_seq(to_enumerable(["type", "fields", "label", "doc", "name"]), ObjectExpr857())
+input_record_schema: FSharpSet[str] = of_seq(to_enumerable(["type", "fields", "label", "doc", "name"]), ObjectExpr827())
 
-class ObjectExpr858:
+class ObjectExpr828:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-input_array_schema: FSharpSet[str] = of_seq(to_enumerable(["type", "items", "label", "doc", "name"]), ObjectExpr858())
+input_array_schema: FSharpSet[str] = of_seq(to_enumerable(["type", "items", "label", "doc", "name"]), ObjectExpr828())
 
-class ObjectExpr859:
+class ObjectExpr829:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-schema_def_requirement_type: FSharpSet[str] = of_seq(to_enumerable(["name", "type"]), ObjectExpr859())
+schema_def_requirement_type: FSharpSet[str] = of_seq(to_enumerable(["name", "type"]), ObjectExpr829())
 
-class ObjectExpr860:
+class ObjectExpr830:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-software_package: FSharpSet[str] = of_seq(to_enumerable(["package", "version", "specs"]), ObjectExpr860())
+software_package: FSharpSet[str] = of_seq(to_enumerable(["package", "version", "specs"]), ObjectExpr830())
 
-class ObjectExpr862:
+class ObjectExpr831:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-input_binding: FSharpSet[str] = of_seq(to_enumerable(["loadContents", "position", "prefix", "separate", "itemSeparator", "valueFrom", "shellQuote"]), ObjectExpr862())
+input_binding: FSharpSet[str] = of_seq(to_enumerable(["loadContents", "position", "prefix", "separate", "itemSeparator", "valueFrom", "shellQuote"]), ObjectExpr831())
 
-class ObjectExpr864:
+class ObjectExpr832:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-cwl_input: FSharpSet[str] = of_seq(to_enumerable(["id", "type", "label", "secondaryFiles", "streamable", "doc", "format", "loadContents", "loadListing", "default", "inputBinding"]), ObjectExpr864())
+cwl_input: FSharpSet[str] = of_seq(to_enumerable(["id", "type", "label", "secondaryFiles", "streamable", "doc", "format", "loadContents", "loadListing", "default", "inputBinding"]), ObjectExpr832())
 
-class ObjectExpr865:
+class ObjectExpr833:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-output_binding: FSharpSet[str] = of_seq(to_enumerable(["loadContents", "loadListing", "glob", "outputEval"]), ObjectExpr865())
+output_binding: FSharpSet[str] = of_seq(to_enumerable(["loadContents", "loadListing", "glob", "outputEval"]), ObjectExpr833())
 
-class ObjectExpr866:
+class ObjectExpr834:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-cwl_output: FSharpSet[str] = of_seq(to_enumerable(["id", "type", "label", "secondaryFiles", "streamable", "doc", "format", "outputBinding", "outputSource"]), ObjectExpr866())
+cwl_output: FSharpSet[str] = of_seq(to_enumerable(["id", "type", "label", "secondaryFiles", "streamable", "doc", "format", "outputBinding", "outputSource"]), ObjectExpr834())
 
-class ObjectExpr867:
+class ObjectExpr835:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-docker_requirement: FSharpSet[str] = of_seq(to_enumerable(["class", "dockerPull", "dockerFile", "dockerImageId", "dockerLoad", "dockerImport", "dockerOutputDirectory", "cwltool:dockerRunOptions"]), ObjectExpr867())
+docker_requirement: FSharpSet[str] = of_seq(to_enumerable(["class", "dockerPull", "dockerFile", "dockerImageId", "dockerLoad", "dockerImport", "dockerOutputDirectory", "cwltool:dockerRunOptions"]), ObjectExpr835())
 
-class ObjectExpr868:
+class ObjectExpr836:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-environment_def: FSharpSet[str] = of_seq(to_enumerable(["envName", "envValue"]), ObjectExpr868())
+environment_def: FSharpSet[str] = of_seq(to_enumerable(["envName", "envValue"]), ObjectExpr836())
 
-class ObjectExpr869:
+class ObjectExpr837:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-load_listing_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "loadListing"]), ObjectExpr869())
+load_listing_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "loadListing"]), ObjectExpr837())
 
-class ObjectExpr871:
+class ObjectExpr838:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-work_reuse_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "enableReuse"]), ObjectExpr871())
+work_reuse_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "enableReuse"]), ObjectExpr838())
 
-class ObjectExpr872:
+class ObjectExpr839:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-network_access_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "networkAccess"]), ObjectExpr872())
+network_access_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "networkAccess"]), ObjectExpr839())
 
-class ObjectExpr873:
+class ObjectExpr840:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-inplace_update_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "inplaceUpdate"]), ObjectExpr873())
+inplace_update_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "inplaceUpdate"]), ObjectExpr840())
 
-class ObjectExpr875:
+class ObjectExpr841:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-resource_requirement_instance: FSharpSet[str] = of_seq(to_enumerable(["class", "coresMin", "coresMax", "ramMin", "ramMax", "tmpdirMin", "tmpdirMax", "outdirMin", "outdirMax"]), ObjectExpr875())
+resource_requirement_instance: FSharpSet[str] = of_seq(to_enumerable(["class", "coresMin", "coresMax", "ramMin", "ramMax", "tmpdirMin", "tmpdirMax", "outdirMin", "outdirMax"]), ObjectExpr841())
 
-class ObjectExpr876:
+class ObjectExpr842:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-inline_javascript_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "expressionLib"]), ObjectExpr876())
+inline_javascript_requirement_value: FSharpSet[str] = of_seq(to_enumerable(["class", "expressionLib"]), ObjectExpr842())
 
-class ObjectExpr877:
+class ObjectExpr844:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-hint_unknown_value: FSharpSet[str] = of_seq(to_enumerable(["class", "raw"]), ObjectExpr877())
+hint_unknown_value: FSharpSet[str] = of_seq(to_enumerable(["class", "raw"]), ObjectExpr844())
 
-class ObjectExpr879:
+class ObjectExpr846:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-tool_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "class", "id", "label", "doc", "intent", "requirements", "hints", "cwlVersion", "baseCommand", "arguments", "stdin", "stderr", "stdout", "successCodes", "temporaryFailCodes", "permanentFailCodes"]), ObjectExpr879())
+tool_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "class", "id", "label", "doc", "intent", "requirements", "hints", "cwlVersion", "baseCommand", "arguments", "stdin", "stderr", "stdout", "successCodes", "temporaryFailCodes", "permanentFailCodes"]), ObjectExpr846())
 
-class ObjectExpr881:
+class ObjectExpr847:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-expression_tool_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "class", "id", "label", "doc", "intent", "requirements", "hints", "cwlVersion", "expression"]), ObjectExpr881())
+expression_tool_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "class", "id", "label", "doc", "intent", "requirements", "hints", "cwlVersion", "expression"]), ObjectExpr847())
 
-class ObjectExpr882:
+class ObjectExpr848:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-operation_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "label", "doc", "intent", "class", "id", "requirements", "hints", "cwlVersion"]), ObjectExpr882())
+operation_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "label", "doc", "intent", "class", "id", "requirements", "hints", "cwlVersion"]), ObjectExpr848())
 
-class ObjectExpr883:
+class ObjectExpr849:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-workflow_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "label", "doc", "intent", "class", "steps", "id", "requirements", "hints", "cwlVersion"]), ObjectExpr883())
+workflow_description: FSharpSet[str] = of_seq(to_enumerable(["inputs", "outputs", "label", "doc", "intent", "class", "steps", "id", "requirements", "hints", "cwlVersion"]), ObjectExpr849())
 
-class ObjectExpr884:
+class ObjectExpr850:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-step_input: FSharpSet[str] = of_seq(to_enumerable(["id", "source", "default", "valueFrom", "linkMerge", "pickValue", "doc", "loadContents", "loadListing", "label"]), ObjectExpr884())
+step_input: FSharpSet[str] = of_seq(to_enumerable(["id", "source", "default", "valueFrom", "linkMerge", "pickValue", "doc", "loadContents", "loadListing", "label"]), ObjectExpr850())
 
-class ObjectExpr885:
+class ObjectExpr851:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-step_output_parameter: FSharpSet[str] = of_seq(to_enumerable(["id"]), ObjectExpr885())
+step_output_parameter: FSharpSet[str] = of_seq(to_enumerable(["id"]), ObjectExpr851())
 
-class ObjectExpr886:
+class ObjectExpr852:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-workflow_step: FSharpSet[str] = of_seq(to_enumerable(["id", "run", "in", "out", "requirements", "hints", "label", "doc", "scatter", "scatterMethod", "when"]), ObjectExpr886())
+workflow_step: FSharpSet[str] = of_seq(to_enumerable(["id", "run", "in", "out", "requirements", "hints", "label", "doc", "scatter", "scatterMethod", "when"]), ObjectExpr852())
 
-class ObjectExpr887:
+class ObjectExpr853:
     def Compare(self, x: str, y: str) -> int:
         return compare_primitives(x, y)
 
 
-parameter_reference: FSharpSet[str] = of_seq(to_enumerable(["class", "path", "location", "type", "value"]), ObjectExpr887())
+parameter_reference: FSharpSet[str] = of_seq(to_enumerable(["class", "path", "location", "type", "value"]), ObjectExpr853())
 
 __all__ = ["cwl_input", "cwl_output", "directory_instance", "dirent_instance", "docker_requirement", "environment_def", "expression_tool_description", "file_instance", "hint_unknown_value", "inline_javascript_requirement_value", "inplace_update_requirement_value", "input_array_schema", "input_binding", "input_enum_schema", "input_record_field", "input_record_schema", "load_listing_requirement_value", "network_access_requirement_value", "operation_description", "output_binding", "parameter_reference", "resource_requirement_instance", "schema_def_requirement_type", "software_package", "step_input", "step_output_parameter", "tool_description", "work_reuse_requirement_value", "workflow_description", "workflow_step"]