ARCtrl 2.2.0__tar.gz → 2.2.2__tar.gz

{arctrl-2.2.0 → arctrl-2.2.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: ARCtrl
-Version: 2.2.0
+Version: 2.2.2
 Summary: Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems.
 Home-page: https://github.com/nfdi4plants/ARCtrl
 Keywords: arc,annotated research context,isa,research data,multi platform

{arctrl-2.2.0 → arctrl-2.2.2}/arctrl/CWL/cwltypes.py

@@ -6,7 +6,7 @@ from ..fable_modules.dynamic_obj.dyn_obj import set_property
 from ..fable_modules.fable_library.reflection import (TypeInfo, class_type, string_type, option_type, bool_type, record_type, union_type, array_type)
 from ..fable_modules.fable_library.types import (Record, Array, Union, FSharpRef)
 
-def _expr453() -> TypeInfo:
+def _expr431() -> TypeInfo:
     return class_type("ARCtrl.CWL.FileInstance", None, FileInstance, DynamicObj_reflection())
 
 
@@ -16,13 +16,13 @@ class FileInstance(DynamicObj):
         pass
 
 
-FileInstance_reflection = _expr453
+FileInstance_reflection = _expr431
 
 def FileInstance__ctor(__unit: None=None) -> FileInstance:
     return FileInstance(__unit)
 
 
-def _expr457() -> TypeInfo:
+def _expr433() -> TypeInfo:
     return class_type("ARCtrl.CWL.DirectoryInstance", None, DirectoryInstance, DynamicObj_reflection())
 
 
@@ -32,13 +32,13 @@ class DirectoryInstance(DynamicObj):
         pass
 
 
-DirectoryInstance_reflection = _expr457
+DirectoryInstance_reflection = _expr433
 
 def DirectoryInstance__ctor(__unit: None=None) -> DirectoryInstance:
     return DirectoryInstance(__unit)
 
 
-def _expr458() -> TypeInfo:
+def _expr434() -> TypeInfo:
     return record_type("ARCtrl.CWL.DirentInstance", [], DirentInstance, lambda: [("Entry", string_type), ("Entryname", option_type(string_type)), ("Writable", option_type(bool_type))])
 
 
@@ -48,9 +48,9 @@ class DirentInstance(Record):
     Entryname: str | None
     Writable: bool | None
 
-DirentInstance_reflection = _expr458
+DirentInstance_reflection = _expr434
 
-def _expr459() -> TypeInfo:
+def _expr435() -> TypeInfo:
     return union_type("ARCtrl.CWL.CWLType", [], CWLType, lambda: [[("Item", FileInstance_reflection())], [("Item", DirectoryInstance_reflection())], [("Item", DirentInstance_reflection())], [], [], [], [], [], [], [], [], [("Item", CWLType_reflection())]])
 
 
@@ -65,9 +65,9 @@ class CWLType(Union):
         return ["File", "Directory", "Dirent", "String", "Int", "Long", "Float", "Double", "Boolean", "Stdout", "Null", "Array"]
 
 
-CWLType_reflection = _expr459
+CWLType_reflection = _expr435
 
-def _expr460() -> TypeInfo:
+def _expr438() -> TypeInfo:
     return class_type("ARCtrl.CWL.InputRecordSchema", None, InputRecordSchema, DynamicObj_reflection())
 
 
@@ -77,13 +77,13 @@ class InputRecordSchema(DynamicObj):
         pass
 
 
-InputRecordSchema_reflection = _expr460
+InputRecordSchema_reflection = _expr438
 
 def InputRecordSchema__ctor(__unit: None=None) -> InputRecordSchema:
     return InputRecordSchema(__unit)
 
 
-def _expr461() -> TypeInfo:
+def _expr441() -> TypeInfo:
     return class_type("ARCtrl.CWL.InputEnumSchema", None, InputEnumSchema, DynamicObj_reflection())
 
 
@@ -93,13 +93,13 @@ class InputEnumSchema(DynamicObj):
         pass
 
 
-InputEnumSchema_reflection = _expr461
+InputEnumSchema_reflection = _expr441
 
 def InputEnumSchema__ctor(__unit: None=None) -> InputEnumSchema:
     return InputEnumSchema(__unit)
 
 
-def _expr462() -> TypeInfo:
+def _expr445() -> TypeInfo:
     return class_type("ARCtrl.CWL.InputArraySchema", None, InputArraySchema, DynamicObj_reflection())
 
 
@@ -109,13 +109,13 @@ class InputArraySchema(DynamicObj):
         pass
 
 
-InputArraySchema_reflection = _expr462
+InputArraySchema_reflection = _expr445
 
 def InputArraySchema__ctor(__unit: None=None) -> InputArraySchema:
     return InputArraySchema(__unit)
 
 
-def _expr463() -> TypeInfo:
+def _expr446() -> TypeInfo:
     return class_type("ARCtrl.CWL.SchemaDefRequirementType", None, SchemaDefRequirementType, DynamicObj_reflection())
 
 
@@ -128,13 +128,13 @@ class SchemaDefRequirementType(DynamicObj):
         set_property("types", definitions, this.contents)
 
 
-SchemaDefRequirementType_reflection = _expr463
+SchemaDefRequirementType_reflection = _expr446
 
 def SchemaDefRequirementType__ctor_541DA560(types: Any=None, definitions: Any=None) -> SchemaDefRequirementType:
     return SchemaDefRequirementType(types, definitions)
 
 
-def _expr464() -> TypeInfo:
+def _expr448() -> TypeInfo:
     return record_type("ARCtrl.CWL.SoftwarePackage", [], SoftwarePackage, lambda: [("Package", string_type), ("Version", option_type(array_type(string_type))), ("Specs", option_type(array_type(string_type)))])
 
 
@@ -144,7 +144,7 @@ class SoftwarePackage(Record):
     Version: Array[str] | None
     Specs: Array[str] | None
 
-SoftwarePackage_reflection = _expr464
+SoftwarePackage_reflection = _expr448
 
 __all__ = ["FileInstance_reflection", "DirectoryInstance_reflection", "DirentInstance_reflection", "CWLType_reflection", "InputRecordSchema_reflection", "InputEnumSchema_reflection", "InputArraySchema_reflection", "SchemaDefRequirementType_reflection", "SoftwarePackage_reflection"]
 

{arctrl-2.2.0 → arctrl-2.2.2}/arctrl/CWL/decode.py

@@ -281,7 +281,7 @@ def Decode_cwlTypeStringMatcher(t: str, get: IGetters) -> tuple[CWLType, bool]:
     return (CWLType(0, FileInstance__ctor()) if (new_t == "File") else (CWLType(1, DirectoryInstance__ctor()) if (new_t == "Directory") else (_arrow523() if (new_t == "Dirent") else (CWLType(3) if (new_t == "string") else (CWLType(4) if (new_t == "int") else (CWLType(5) if (new_t == "long") else (CWLType(6) if (new_t == "float") else (CWLType(7) if (new_t == "double") else (CWLType(8) if (new_t == "boolean") else (CWLType(11, CWLType(0, FileInstance__ctor())) if (new_t == "File[]") else (CWLType(11, CWLType(1, DirectoryInstance__ctor())) if (new_t == "Directory[]") else (CWLType(11, _arrow524()) if (new_t == "Dirent[]") else (CWLType(11, CWLType(3)) if (new_t == "string[]") else (CWLType(11, CWLType(4)) if (new_t == "int[]") else (CWLType(11, CWLType(5)) if (new_t == "long[]") else (CWLType(11, CWLType(6)) if (new_t == "float[]") else (CWLType(11, CWLType(7)) if (new_t == "double[]") else (CWLType(11, CWLType(8)) if (new_t == "boolean[]") else (CWLType(9) if (new_t == "stdout") else (CWLType(10) if (new_t == "null") else _arrow525()))))))))))))))))))), pattern_input[0])
 
 
-def _arrow528(value_1: YAMLElement) -> tuple[CWLType, bool]:
+def _arrow527(value_1: YAMLElement) -> tuple[CWLType, bool]:
     def getter(get: IGetters) -> tuple[CWLType, bool]:
         cwl_type: str | None
         object_arg: IRequiredGetter = get.Required
@@ -325,11 +325,11 @@ def _arrow528(value_1: YAMLElement) -> tuple[CWLType, bool]:
 
         cwl_type = object_arg.Field("type", arg_1)
         if cwl_type is None:
-            def _arrow527(__unit: None=None, get: Any=get) -> CWLType:
+            def _arrow526(__unit: None=None, get: Any=get) -> CWLType:
                 object_arg_1: IRequiredGetter = get.Required
                 return object_arg_1.Field("type", Decode_cwlArrayTypeDecoder)
 
-            return (_arrow527(), False)
+            return (_arrow526(), False)
 
         else: 
             return Decode_cwlTypeStringMatcher(cwl_type, get)
@@ -338,45 +338,45 @@ def _arrow528(value_1: YAMLElement) -> tuple[CWLType, bool]:
     return object(getter, value_1)
 
 
-Decode_cwlTypeDecoder: Callable[[YAMLElement], tuple[CWLType, bool]] = _arrow528
+Decode_cwlTypeDecoder: Callable[[YAMLElement], tuple[CWLType, bool]] = _arrow527
 
-def _arrow535(value_2: YAMLElement) -> Array[CWLOutput]:
+def _arrow537(value_2: YAMLElement) -> Array[CWLOutput]:
     def getter(get: IGetters) -> Array[CWLOutput]:
         dict_1: Any = get.Overflow.FieldList(empty())
-        def _arrow534(__unit: None=None, get: Any=get) -> IEnumerable_1[CWLOutput]:
-            def _arrow533(key: str) -> IEnumerable_1[CWLOutput]:
+        def _arrow536(__unit: None=None, get: Any=get) -> IEnumerable_1[CWLOutput]:
+            def _arrow535(key: str) -> IEnumerable_1[CWLOutput]:
                 value: YAMLElement = get_item_from_dict(dict_1, key)
                 output_binding: OutputBinding | None = Decode_outputBindingDecoder(value)
                 output_source: str | None
                 object_arg: IOptionalGetter = get.Optional
                 output_source = object_arg.Field("outputSource", string)
                 output: CWLOutput = CWLOutput(key, (((Decode_cwlTypeStringMatcher(head(value.fields[0]).fields[0].Value, get)[0] if is_empty(tail(value.fields[0])) else Decode_cwlTypeDecoder(value)[0]) if (head(value.fields[0]).tag == 1) else Decode_cwlTypeDecoder(value)[0]) if (not is_empty(value.fields[0])) else Decode_cwlTypeDecoder(value)[0]) if (value.tag == 3) else Decode_cwlTypeDecoder(value)[0])
-                def _expr529():
+                def _expr531():
                     set_optional_property("outputBinding", output_binding, output)
                     return empty_1()
 
-                def _arrow532(__unit: None=None) -> IEnumerable_1[CWLOutput]:
-                    def _expr530():
+                def _arrow534(__unit: None=None) -> IEnumerable_1[CWLOutput]:
+                    def _expr532():
                         set_optional_property("outputSource", output_source, output)
                         return empty_1()
 
-                    def _arrow531(__unit: None=None) -> IEnumerable_1[CWLOutput]:
+                    def _arrow533(__unit: None=None) -> IEnumerable_1[CWLOutput]:
                         return singleton(output)
 
-                    return append(_expr530() if (output_source is not None) else empty_1(), delay(_arrow531))
+                    return append(_expr532() if (output_source is not None) else empty_1(), delay(_arrow533))
 
-                return append(_expr529() if (output_binding is not None) else empty_1(), delay(_arrow532))
+                return append(_expr531() if (output_binding is not None) else empty_1(), delay(_arrow534))
 
-            return collect(_arrow533, dict_1.keys())
+            return collect(_arrow535, dict_1.keys())
 
-        return list(to_array(delay(_arrow534)))
+        return list(to_array(delay(_arrow536)))
 
     return object(getter, value_2)
 
 
-Decode_outputArrayDecoder: Callable[[YAMLElement], Array[CWLOutput]] = _arrow535
+Decode_outputArrayDecoder: Callable[[YAMLElement], Array[CWLOutput]] = _arrow537
 
-def _arrow536(value: YAMLElement) -> Array[CWLOutput]:
+def _arrow538(value: YAMLElement) -> Array[CWLOutput]:
     def getter(get: IGetters) -> Array[CWLOutput]:
         object_arg: IRequiredGetter = get.Required
         return object_arg.Field("outputs", Decode_outputArrayDecoder)
@@ -384,31 +384,31 @@ def _arrow536(value: YAMLElement) -> Array[CWLOutput]:
     return object(getter, value)
 
 
-Decode_outputsDecoder: Callable[[YAMLElement], Array[CWLOutput]] = _arrow536
+Decode_outputsDecoder: Callable[[YAMLElement], Array[CWLOutput]] = _arrow538
 
 def Decode_dockerRequirementDecoder(get: IGetters) -> DockerRequirement:
-    def _arrow537(__unit: None=None, get: Any=get) -> str | None:
+    def _arrow539(__unit: None=None, get: Any=get) -> str | None:
         object_arg: IOptionalGetter = get.Optional
         return object_arg.Field("dockerPull", string)
 
-    def _arrow539(__unit: None=None, get: Any=get) -> Any | None:
+    def _arrow541(__unit: None=None, get: Any=get) -> Any | None:
         object_arg_1: IOptionalGetter = get.Optional
         def arg_3(value_1: YAMLElement) -> Any:
             def key_decoder(x: str, value_1: Any=value_1) -> str:
                 return x
 
-            def _arrow538(value_2: YAMLElement, value_1: Any=value_1) -> str:
+            def _arrow540(value_2: YAMLElement, value_1: Any=value_1) -> str:
                 return string(value_2)
 
-            return map_1(key_decoder, _arrow538, value_1)
+            return map_1(key_decoder, _arrow540, value_1)
 
         return object_arg_1.Field("dockerFile", arg_3)
 
-    def _arrow540(__unit: None=None, get: Any=get) -> str | None:
+    def _arrow542(__unit: None=None, get: Any=get) -> str | None:
         object_arg_2: IOptionalGetter = get.Optional
         return object_arg_2.Field("dockerImageId", string)
 
-    return DockerRequirement(_arrow537(), _arrow539(), _arrow540())
+    return DockerRequirement(_arrow539(), _arrow541(), _arrow542())
 
 
 def Decode_envVarRequirementDecoder(get: IGetters) -> Array[EnvironmentDef]:
@@ -416,15 +416,15 @@ def Decode_envVarRequirementDecoder(get: IGetters) -> Array[EnvironmentDef]:
     def arg_1(value_3: YAMLElement, get: Any=get) -> Array[EnvironmentDef]:
         def decoder(value_2: YAMLElement, value_3: Any=value_3) -> EnvironmentDef:
             def getter(get2: IGetters, value_2: Any=value_2) -> EnvironmentDef:
-                def _arrow541(__unit: None=None, get2: Any=get2) -> str:
+                def _arrow543(__unit: None=None, get2: Any=get2) -> str:
                     object_arg_1: IRequiredGetter = get2.Required
                     return object_arg_1.Field("envName", string)
 
-                def _arrow542(__unit: None=None, get2: Any=get2) -> str:
+                def _arrow544(__unit: None=None, get2: Any=get2) -> str:
                     object_arg_2: IRequiredGetter = get2.Required
                     return object_arg_2.Field("envValue", string)
 
-                return EnvironmentDef(_arrow541(), _arrow542())
+                return EnvironmentDef(_arrow543(), _arrow544())
 
             return object(getter, value_2)
 
@@ -438,31 +438,31 @@ def Decode_softwareRequirementDecoder(get: IGetters) -> Array[SoftwarePackage]:
     def arg_1(value_6: YAMLElement, get: Any=get) -> Array[SoftwarePackage]:
         def decoder(value_5: YAMLElement, value_6: Any=value_6) -> SoftwarePackage:
             def getter(get2: IGetters, value_5: Any=value_5) -> SoftwarePackage:
-                def _arrow543(__unit: None=None, get2: Any=get2) -> str:
+                def _arrow545(__unit: None=None, get2: Any=get2) -> str:
                     object_arg_1: IRequiredGetter = get2.Required
                     return object_arg_1.Field("package", string)
 
-                def _arrow545(__unit: None=None, get2: Any=get2) -> Array[str] | None:
+                def _arrow547(__unit: None=None, get2: Any=get2) -> Array[str] | None:
                     object_arg_2: IOptionalGetter = get2.Optional
                     def arg_5(value_1: YAMLElement) -> Array[str]:
-                        def _arrow544(value_2: YAMLElement, value_1: Any=value_1) -> str:
+                        def _arrow546(value_2: YAMLElement, value_1: Any=value_1) -> str:
                             return string(value_2)
 
-                        return resizearray(_arrow544, value_1)
+                        return resizearray(_arrow546, value_1)
 
                     return object_arg_2.Field("version", arg_5)
 
-                def _arrow547(__unit: None=None, get2: Any=get2) -> Array[str] | None:
+                def _arrow549(__unit: None=None, get2: Any=get2) -> Array[str] | None:
                     object_arg_3: IOptionalGetter = get2.Optional
                     def arg_7(value_3: YAMLElement) -> Array[str]:
-                        def _arrow546(value_4: YAMLElement, value_3: Any=value_3) -> str:
+                        def _arrow548(value_4: YAMLElement, value_3: Any=value_3) -> str:
                             return string(value_4)
 
-                        return resizearray(_arrow546, value_3)
+                        return resizearray(_arrow548, value_3)
 
                     return object_arg_3.Field("specs", arg_7)
 
-                return SoftwarePackage(_arrow543(), _arrow545(), _arrow547())
+                return SoftwarePackage(_arrow545(), _arrow547(), _arrow549())
 
             return object(getter, value_5)
 

{arctrl-2.2.0 → arctrl-2.2.2}/arctrl/Contract/arc_assay.py

@@ -14,10 +14,10 @@ from .contract import (Contract, DTOType, DTO)
 
 def _007CAssayPath_007C__007C(input: Array[str]) -> str | None:
     (pattern_matching_result,) = (None,)
-    def _arrow3082(x: str, y: str, input: Any=input) -> bool:
+    def _arrow3085(x: str, y: str, input: Any=input) -> bool:
         return x == y
 
-    if (len(input) == 3) if (not equals_with(_arrow3082, input, None)) else False:
+    if (len(input) == 3) if (not equals_with(_arrow3085, input, None)) else False:
         if input[0] == "assays":
             if input[2] == "isa.assay.xlsx":
                 pattern_matching_result = 0
@@ -46,20 +46,20 @@ def ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(this: ArcAssay, WithFold
     with_folder: bool = default_arg(WithFolder, False)
     path: str = Assay_fileNameFromIdentifier(this.Identifier)
     c: Contract = Contract.create_create(path, DTOType(0), DTO(0, ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(this)))
-    def _arrow3086(__unit: None=None, this: Any=this, WithFolder: Any=WithFolder) -> IEnumerable_1[Contract]:
-        def _arrow3084(__unit: None=None) -> IEnumerable_1[Contract]:
+    def _arrow3089(__unit: None=None, this: Any=this, WithFolder: Any=WithFolder) -> IEnumerable_1[Contract]:
+        def _arrow3087(__unit: None=None) -> IEnumerable_1[Contract]:
             folder_fs: FileSystemTree = FileSystemTree.create_assays_folder([FileSystemTree.create_assay_folder(this.Identifier)])
-            def _arrow3083(p: str) -> IEnumerable_1[Contract]:
+            def _arrow3086(p: str) -> IEnumerable_1[Contract]:
                 return singleton(Contract.create_create(p, DTOType(8))) if ((p != "assays/.gitkeep") if (p != path) else False) else empty()
 
-            return collect(_arrow3083, folder_fs.ToFilePaths(False))
+            return collect(_arrow3086, folder_fs.ToFilePaths(False))
 
-        def _arrow3085(__unit: None=None) -> IEnumerable_1[Contract]:
+        def _arrow3088(__unit: None=None) -> IEnumerable_1[Contract]:
             return singleton(c)
 
-        return append(_arrow3084() if with_folder else empty(), delay(_arrow3085))
+        return append(_arrow3087() if with_folder else empty(), delay(_arrow3088))
 
-    return to_array(delay(_arrow3086))
+    return to_array(delay(_arrow3089))
 
 
 def ARCtrl_ArcAssay__ArcAssay_ToUpdateContract(this: ArcAssay) -> Contract:

{arctrl-2.2.0 → arctrl-2.2.2}/arctrl/Contract/arc_investigation.py

@@ -9,10 +9,10 @@ from .contract import (Contract, DTOType, DTO)
 
 def _007CInvestigationPath_007C__007C(input: Array[str]) -> str | None:
     (pattern_matching_result,) = (None,)
-    def _arrow3092(x: str, y: str, input: Any=input) -> bool:
+    def _arrow3095(x: str, y: str, input: Any=input) -> bool:
         return x == y
 
-    if (len(input) == 1) if (not equals_with(_arrow3092, input, None)) else False:
+    if (len(input) == 1) if (not equals_with(_arrow3095, input, None)) else False:
         if input[0] == "isa.investigation.xlsx":
             pattern_matching_result = 0
 

{arctrl-2.2.0 → arctrl-2.2.2}/arctrl/Contract/arc_study.py

@@ -15,10 +15,10 @@ from .contract import (Contract, DTOType, DTO)
 
 def _007CStudyPath_007C__007C(input: Array[str]) -> str | None:
     (pattern_matching_result,) = (None,)
-    def _arrow3087(x: str, y: str, input: Any=input) -> bool:
+    def _arrow3090(x: str, y: str, input: Any=input) -> bool:
         return x == y
 
-    if (len(input) == 3) if (not equals_with(_arrow3087, input, None)) else False:
+    if (len(input) == 3) if (not equals_with(_arrow3090, input, None)) else False:
         if input[0] == "studies":
             if input[2] == "isa.study.xlsx":
                 pattern_matching_result = 0
@@ -47,20 +47,20 @@ def ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49(this: ArcStudy, WithFold
     with_folder: bool = default_arg(WithFolder, False)
     path: str = Study_fileNameFromIdentifier(this.Identifier)
     c: Contract = Contract.create_create(path, DTOType(1), DTO(0, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(this)))
-    def _arrow3091(__unit: None=None, this: Any=this, WithFolder: Any=WithFolder) -> IEnumerable_1[Contract]:
-        def _arrow3089(__unit: None=None) -> IEnumerable_1[Contract]:
+    def _arrow3094(__unit: None=None, this: Any=this, WithFolder: Any=WithFolder) -> IEnumerable_1[Contract]:
+        def _arrow3092(__unit: None=None) -> IEnumerable_1[Contract]:
             folder_fs: FileSystemTree = FileSystemTree.create_studies_folder([FileSystemTree.create_study_folder(this.Identifier)])
-            def _arrow3088(p: str) -> IEnumerable_1[Contract]:
+            def _arrow3091(p: str) -> IEnumerable_1[Contract]:
                 return singleton(Contract.create_create(p, DTOType(8))) if ((p != "studies/.gitkeep") if (p != path) else False) else empty()
 
-            return collect(_arrow3088, folder_fs.ToFilePaths(False))
+            return collect(_arrow3091, folder_fs.ToFilePaths(False))
 
-        def _arrow3090(__unit: None=None) -> IEnumerable_1[Contract]:
+        def _arrow3093(__unit: None=None) -> IEnumerable_1[Contract]:
             return singleton(c)
 
-        return append(_arrow3089() if with_folder else empty(), delay(_arrow3090))
+        return append(_arrow3092() if with_folder else empty(), delay(_arrow3093))
 
-    return to_array(delay(_arrow3091))
+    return to_array(delay(_arrow3094))
 
 
 def ARCtrl_ArcStudy__ArcStudy_ToUpdateContract(this: ArcStudy) -> Contract:

{arctrl-2.2.0 → arctrl-2.2.2}/arctrl/Contract/contract.py

@@ -5,7 +5,7 @@ from ..fable_modules.fable_library.option import default_arg
 from ..fable_modules.fable_library.reflection import (TypeInfo, union_type, string_type, array_type, record_type, obj_type, option_type)
 from ..fable_modules.fable_library.types import (Array, Union, Record)
 
-def _expr3069() -> TypeInfo:
+def _expr3072() -> TypeInfo:
     return union_type("ARCtrl.Contract.DTOType", [], DTOType, lambda: [[], [], [], [], [], [], [], [], [], []])
 
 
@@ -20,9 +20,9 @@ class DTOType(Union):
         return ["ISA_Assay", "ISA_Study", "ISA_Investigation", "ISA_Datamap", "JSON", "Markdown", "CWL", "YAML", "PlainText", "Cli"]
 
 
-DTOType_reflection = _expr3069
+DTOType_reflection = _expr3072
 
-def _expr3070() -> TypeInfo:
+def _expr3073() -> TypeInfo:
     return record_type("ARCtrl.Contract.CLITool", [], CLITool, lambda: [("Name", string_type), ("Arguments", array_type(string_type))])
 
 
@@ -35,9 +35,9 @@ class CLITool(Record):
         return CLITool(name, arguments)
 
 
-CLITool_reflection = _expr3070
+CLITool_reflection = _expr3073
 
-def _expr3071() -> TypeInfo:
+def _expr3074() -> TypeInfo:
     return union_type("ARCtrl.Contract.DTO", [], DTO, lambda: [[("Item", obj_type)], [("Item", string_type)], [("Item", CLITool_reflection())]])
 
 
@@ -52,7 +52,7 @@ class DTO(Union):
         return ["Spreadsheet", "Text", "CLITool"]
 
 
-DTO_reflection = _expr3071
+DTO_reflection = _expr3074
 
 def DTO__get_isSpreadsheet(this: DTO) -> bool:
     if this.tag == 0:
@@ -108,7 +108,7 @@ def DTO__AsCLITool(this: DTO) -> CLITool:
 
 
 
-def _expr3072() -> TypeInfo:
+def _expr3075() -> TypeInfo:
     return record_type("ARCtrl.Contract.Contract", [], Contract, lambda: [("Operation", string_type), ("Path", string_type), ("DTOType", option_type(DTOType_reflection())), ("DTO", option_type(DTO_reflection()))])
 
 
@@ -147,7 +147,7 @@ class Contract(Record):
         return Contract("RENAME", old_path, None, DTO(1, new_path))
 
 
-Contract_reflection = _expr3072
+Contract_reflection = _expr3075
 
 __all__ = ["DTOType_reflection", "CLITool_reflection", "DTO_reflection", "DTO__get_isSpreadsheet", "DTO__get_isText", "DTO__get_isCLITool", "DTO__AsSpreadsheet", "DTO__AsText", "DTO__AsCLITool", "Contract_reflection"]
 

{arctrl-2.2.0 → arctrl-2.2.2}/arctrl/Contract/datamap.py

@@ -12,10 +12,10 @@ from .contract import (Contract, DTOType, DTO)
 
 def _007CDatamapPath_007C__007C(input: Array[str]) -> str | None:
     (pattern_matching_result,) = (None,)
-    def _arrow3073(x: str, y: str, input: Any=input) -> bool:
+    def _arrow3076(x: str, y: str, input: Any=input) -> bool:
         return x == y
 
-    if (len(input) == 3) if (not equals_with(_arrow3073, input, None)) else False:
+    if (len(input) == 3) if (not equals_with(_arrow3076, input, None)) else False:
         if input[0] == "assays":
             if input[2] == "isa.datamap.xlsx":
                 pattern_matching_result = 0
@@ -68,17 +68,17 @@ def ARCtrl_DataMap__DataMap_ToDeleteContractForAssay_Z721C83C5(this: DataMap, as
 
 
 def ARCtrl_DataMap__DataMap_toDeleteContractForAssay_Static_Z721C83C5(assay_identifier: str) -> Callable[[DataMap], Contract]:
-    def _arrow3074(data_map: DataMap, assay_identifier: Any=assay_identifier) -> Contract:
+    def _arrow3077(data_map: DataMap, assay_identifier: Any=assay_identifier) -> Contract:
         return ARCtrl_DataMap__DataMap_ToDeleteContractForAssay_Z721C83C5(data_map, assay_identifier)
 
-    return _arrow3074
+    return _arrow3077
 
 
 def ARCtrl_DataMap__DataMap_toUpdateContractForAssay_Static_Z721C83C5(assay_identifier: str) -> Callable[[DataMap], Contract]:
-    def _arrow3075(data_map: DataMap, assay_identifier: Any=assay_identifier) -> Contract:
+    def _arrow3078(data_map: DataMap, assay_identifier: Any=assay_identifier) -> Contract:
         return ARCtrl_DataMap__DataMap_ToUpdateContractForAssay_Z721C83C5(data_map, assay_identifier)
 
-    return _arrow3075
+    return _arrow3078
 
 
 def ARCtrl_DataMap__DataMap_tryFromReadContractForAssay_Static(assay_identifier: str, c: Contract) -> DataMap | None:
@@ -89,11 +89,11 @@ def ARCtrl_DataMap__DataMap_tryFromReadContractForAssay_Static(assay_identifier:
             if c.DTOType.tag == 3:
                 if c.DTO is not None:
                     if c.DTO.tag == 0:
-                        def _arrow3076(__unit: None=None, assay_identifier: Any=assay_identifier, c: Any=c) -> bool:
+                        def _arrow3079(__unit: None=None, assay_identifier: Any=assay_identifier, c: Any=c) -> bool:
                             fsworkbook: Any = c.DTO.fields[0]
                             return c.Path == path
 
-                        if _arrow3076():
+                        if _arrow3079():
                             pattern_matching_result = 0
                             fsworkbook_1 = c.DTO.fields[0]
                             p_1 = c.Path
@@ -147,17 +147,17 @@ def ARCtrl_DataMap__DataMap_ToDeleteContractForStudy_Z721C83C5(this: DataMap, st
 
 
 def ARCtrl_DataMap__DataMap_toDeleteContractForStudy_Static_Z721C83C5(study_identifier: str) -> Callable[[DataMap], Contract]:
-    def _arrow3077(data_map: DataMap, study_identifier: Any=study_identifier) -> Contract:
+    def _arrow3080(data_map: DataMap, study_identifier: Any=study_identifier) -> Contract:
         return ARCtrl_DataMap__DataMap_ToDeleteContractForStudy_Z721C83C5(data_map, study_identifier)
 
-    return _arrow3077
+    return _arrow3080
 
 
 def ARCtrl_DataMap__DataMap_toUpdateContractForStudy_Static_Z721C83C5(study_identifier: str) -> Callable[[DataMap], Contract]:
-    def _arrow3078(data_map: DataMap, study_identifier: Any=study_identifier) -> Contract:
+    def _arrow3081(data_map: DataMap, study_identifier: Any=study_identifier) -> Contract:
         return ARCtrl_DataMap__DataMap_ToUpdateContractForStudy_Z721C83C5(data_map, study_identifier)
 
-    return _arrow3078
+    return _arrow3081
 
 
 def ARCtrl_DataMap__DataMap_tryFromReadContractForStudy_Static(study_identifier: str, c: Contract) -> DataMap | None:
@@ -168,11 +168,11 @@ def ARCtrl_DataMap__DataMap_tryFromReadContractForStudy_Static(study_identifier:
             if c.DTOType.tag == 3:
                 if c.DTO is not None:
                     if c.DTO.tag == 0:
-                        def _arrow3079(__unit: None=None, study_identifier: Any=study_identifier, c: Any=c) -> bool:
+                        def _arrow3082(__unit: None=None, study_identifier: Any=study_identifier, c: Any=c) -> bool:
                             fsworkbook: Any = c.DTO.fields[0]
                             return c.Path == path
 
-                        if _arrow3079():
+                        if _arrow3082():
                             pattern_matching_result = 0
                             fsworkbook_1 = c.DTO.fields[0]
                             p_1 = c.Path

{arctrl-2.2.0 → arctrl-2.2.2}/arctrl/Contract/git.py

@@ -26,23 +26,23 @@ gitignore_contract: Contract = Contract.create_create(".gitignore", DTOType(8),
 
 gitattributes_contract: Contract = Contract.create_create(".gitattributes", DTOType(8), DTO(1, dga))
 
-def _expr3093() -> TypeInfo:
+def _expr3096() -> TypeInfo:
     return class_type("ARCtrl.Contract.Git.Init", None, Init)
 
 
 class Init:
     ...
 
-Init_reflection = _expr3093
+Init_reflection = _expr3096
 
-def _expr3094() -> TypeInfo:
+def _expr3097() -> TypeInfo:
     return class_type("ARCtrl.Contract.Git.Clone", None, Clone)
 
 
 class Clone:
     ...
 
-Clone_reflection = _expr3094
+Clone_reflection = _expr3097
 
 def Init_get_init(__unit: None=None) -> str:
     return "init"
@@ -93,25 +93,25 @@ def Clone_createCloneContract_5000466F(remote_url: str, merge: bool | None=None,
     nolfs_1: bool = default_arg(nolfs, False)
     merge_1: bool = default_arg(merge, False)
     remote_url_1: str = remote_url if (token is None) else Clone_formatRepoString(token[0], token[1], remote_url)
-    def _arrow3100(__unit: None=None, remote_url: Any=remote_url, merge: Any=merge, branch: Any=branch, token: Any=token, nolfs: Any=nolfs) -> IEnumerable_1[str]:
-        def _arrow3099(__unit: None=None) -> IEnumerable_1[str]:
-            def _arrow3098(__unit: None=None) -> IEnumerable_1[str]:
-                def _arrow3097(__unit: None=None) -> IEnumerable_1[str]:
-                    def _arrow3096(__unit: None=None) -> IEnumerable_1[str]:
-                        def _arrow3095(__unit: None=None) -> IEnumerable_1[str]:
+    def _arrow3103(__unit: None=None, remote_url: Any=remote_url, merge: Any=merge, branch: Any=branch, token: Any=token, nolfs: Any=nolfs) -> IEnumerable_1[str]:
+        def _arrow3102(__unit: None=None) -> IEnumerable_1[str]:
+            def _arrow3101(__unit: None=None) -> IEnumerable_1[str]:
+                def _arrow3100(__unit: None=None) -> IEnumerable_1[str]:
+                    def _arrow3099(__unit: None=None) -> IEnumerable_1[str]:
+                        def _arrow3098(__unit: None=None) -> IEnumerable_1[str]:
                             return singleton(".") if merge_1 else empty()
 
-                        return append(singleton(remote_url_1), delay(_arrow3095))
+                        return append(singleton(remote_url_1), delay(_arrow3098))
 
-                    return append(singleton(value(branch)) if (branch is not None) else empty(), delay(_arrow3096))
+                    return append(singleton(value(branch)) if (branch is not None) else empty(), delay(_arrow3099))
 
-                return append(singleton(Clone_get_branchFlag()) if (branch is not None) else empty(), delay(_arrow3097))
+                return append(singleton(Clone_get_branchFlag()) if (branch is not None) else empty(), delay(_arrow3100))
 
-            return append(singleton(Clone_get_noLFSConfig()) if nolfs_1 else empty(), delay(_arrow3098))
+            return append(singleton(Clone_get_noLFSConfig()) if nolfs_1 else empty(), delay(_arrow3101))
 
-        return append(singleton(Clone_get_clone()), delay(_arrow3099))
+        return append(singleton(Clone_get_clone()), delay(_arrow3102))
 
-    return create_git_contract(to_array(delay(_arrow3100)))
+    return create_git_contract(to_array(delay(_arrow3103)))
 
 
 __all__ = ["git_with_args", "create_git_contract_at", "create_git_contract", "gitignore_contract", "gitattributes_contract", "Init_reflection", "Clone_reflection", "Init_get_init", "Init_get_branchFlag", "Init_get_remote", "Init_get_add", "Init_get_origin", "Init_createInitContract_6DFDD678", "Init_createAddRemoteContract_Z721C83C5", "Clone_get_clone", "Clone_get_branchFlag", "Clone_get_noLFSConfig", "Clone_formatRepoString", "Clone_createCloneContract_5000466F"]