AOT-biomaps 2.9.332__tar.gz → 2.9.334__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (53) hide show
  1. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AnalyticRecon.py +5 -3
  2. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/__init__.py +3 -1
  3. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps.egg-info/PKG-INFO +1 -1
  4. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/PKG-INFO +1 -1
  5. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/setup.py +3 -1
  6. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Acoustic/AcousticEnums.py +0 -0
  7. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Acoustic/AcousticTools.py +0 -0
  8. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Acoustic/FocusedWave.py +0 -0
  9. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Acoustic/IrregularWave.py +0 -0
  10. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Acoustic/PlaneWave.py +0 -0
  11. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Acoustic/StructuredWave.py +0 -0
  12. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Acoustic/__init__.py +0 -0
  13. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Acoustic/_mainAcoustic.py +0 -0
  14. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Experiment/ExperimentTools.py +0 -0
  15. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Experiment/Focus.py +0 -0
  16. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Experiment/Tomography.py +0 -0
  17. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Experiment/__init__.py +0 -0
  18. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Experiment/_mainExperiment.py +0 -0
  19. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Optic/Absorber.py +0 -0
  20. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Optic/Laser.py +0 -0
  21. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Optic/OpticEnums.py +0 -0
  22. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Optic/__init__.py +0 -0
  23. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Optic/_mainOptic.py +0 -0
  24. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AOT_Optimizers/DEPIERRO.py +0 -0
  25. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AOT_Optimizers/LS.py +0 -0
  26. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AOT_Optimizers/MAPEM.py +0 -0
  27. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AOT_Optimizers/MLEM.py +0 -0
  28. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AOT_Optimizers/PDHG.py +0 -0
  29. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AOT_Optimizers/__init__.py +0 -0
  30. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AOT_PotentialFunctions/Huber.py +0 -0
  31. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AOT_PotentialFunctions/Quadratic.py +0 -0
  32. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AOT_PotentialFunctions/RelativeDifferences.py +0 -0
  33. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AOT_PotentialFunctions/__init__.py +0 -0
  34. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AOT_SparseSMatrix/SparseSMatrix_CSR.py +0 -0
  35. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AOT_SparseSMatrix/SparseSMatrix_SELL.py +0 -0
  36. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AOT_SparseSMatrix/__init__.py +0 -0
  37. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AOT_biomaps_kernels.cubin +0 -0
  38. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AlgebraicRecon.py +0 -0
  39. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/BayesianRecon.py +0 -0
  40. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/DeepLearningRecon.py +0 -0
  41. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/PrimalDualRecon.py +0 -0
  42. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/ReconEnums.py +0 -0
  43. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/ReconTools.py +0 -0
  44. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/__init__.py +0 -0
  45. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/_mainRecon.py +0 -0
  46. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/Config.py +0 -0
  47. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/Settings.py +0 -0
  48. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps.egg-info/SOURCES.txt +0 -0
  49. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps.egg-info/dependency_links.txt +0 -0
  50. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps.egg-info/requires.txt +0 -0
  51. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps.egg-info/top_level.txt +0 -0
  52. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/README.md +0 -0
  53. {aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/setup.cfg +0 -0
{aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/AOT_Recon/AnalyticRecon.py RENAMED
@@ -14,6 +14,7 @@ class AnalyticRecon(Recon):
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  super().__init__(**kwargs)
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  self.reconType = ReconType.Analytic
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  self.analyticType = analyticType
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+ self.AOsignal_demoldulated = None
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@@ -97,10 +98,9 @@ class AnalyticRecon(Recon):
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  real = s0 - s_pi
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  imag = s_pi_2 - s_3pi_2
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-
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-
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+
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  demodulated_data[(fs, theta)] = (real - 1j * imag) / (2/np.pi)
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-
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  return demodulated_data
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  def run(self, processType = ProcessType.PYTHON, withTumor= True):
@@ -127,6 +127,7 @@ class AnalyticRecon(Recon):
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  analyticType: The type of analytic reconstruction to perform (default is iFOURIER).
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  """
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  if withTumor:
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+ self.AOsignal_demoldulated = self.parse_and_demodulate(withTumor=True)
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  if self.analyticType == AnalyticType.iFOURIER:
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  self.reconPhantom = self._iFourierRecon(self.experiment.AOsignal_withTumor)
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  elif self.analyticType == AnalyticType.iRADON:
@@ -134,6 +135,7 @@ class AnalyticRecon(Recon):
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  else:
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  raise ValueError(f"Unknown analytic type: {self.analyticType}")
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  else:
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+ self.AOsignal_demoldulated = self.parse_and_demodulate(withTumor=False)
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  if self.analyticType == AnalyticType.iFOURIER:
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  self.reconLaser = self._iFourierRecon(self.experiment.AOsignal_withoutTumor)
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  elif self.analyticType == AnalyticType.iRADON:
{aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps/__init__.py RENAMED
@@ -85,7 +85,7 @@ from .AOT_Recon.AOT_PotentialFunctions.RelativeDifferences import *
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  from .Config import config
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  from .Settings import *
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- __version__ = '2.9.332'
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+ __version__ = '2.9.334'
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  __process__ = config.get_process()
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  def initialize(process=None):
@@ -193,6 +193,8 @@ def initialize(process=None):
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{aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/AOT_biomaps.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: AOT_biomaps
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- Version: 2.9.332
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+ Version: 2.9.334
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  Summary: Acousto-Optic Tomography
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  Home-page: https://github.com/LucasDuclos/AcoustoOpticTomography
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  Author: Lucas Duclos
{aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: AOT_biomaps
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- Version: 2.9.332
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+ Version: 2.9.334
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  Summary: Acousto-Optic Tomography
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  Home-page: https://github.com/LucasDuclos/AcoustoOpticTomography
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  Author: Lucas Duclos
{aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/setup.py RENAMED
@@ -2,7 +2,7 @@ from setuptools import setup, find_packages
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  setup(
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  name='AOT_biomaps',
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- version='2.9.332',
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+ version='2.9.334',
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  packages=find_packages(),
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  include_package_data=True,
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@@ -351,6 +351,8 @@ setup(
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{aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/README.md RENAMED
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{aot_biomaps-2.9.332 → aot_biomaps-2.9.334}/setup.cfg RENAMED
File without changes