AMS-BP 0.4.40__tar.gz → 0.4.42__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {ams_bp-0.4.40 → ams_bp-0.4.42}/.github/workflows/publish_pypi.yml +23 -7
- {ams_bp-0.4.40 → ams_bp-0.4.42}/PKG-INFO +2 -1
- {ams_bp-0.4.40 → ams_bp-0.4.42}/README.md +1 -0
- ams_bp-0.4.42/docs/API_Documentation/core/groundtruth_generators/nuclearporecomplexes.md +1 -0
- ams_bp-0.4.42/examples/QuantitativeExperiments/FRAP/FRAP_methods.ipynb +1026 -0
- ams_bp-0.4.42/examples/QuantitativeExperiments/PALM/fPALM/npc_palm.ipynb +1084 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/examples/QuantitativeExperiments/PALM/sptPALM/motionmodels_sptmmaple.ipynb +47 -41
- ams_bp-0.4.42/examples/QuantitativeExperiments/TwoColor/Confocal/confocal_twocolor.ipynb +1395 -0
- ams_bp-0.4.42/examples/QuantitativeExperiments/TwoColor/Widefield/widefield_twocolor.ipynb +1424 -0
- ams_bp-0.4.42/examples/VisualizingIndividualModules/laser_modulation.ipynb +1085 -0
- ams_bp-0.4.42/examples/VisualizingIndividualModules/modules_explained.ipynb +1456 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/__init__.py +1 -1
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/configio/convertconfig.py +13 -0
- ams_bp-0.4.42/src/AMS_BP/core/optics/collection_efficiency.py +24 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/photophysics/photon_physics.py +6 -2
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/sim_microscopy.py +5 -1
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/main.py +0 -7
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/camera_config_widget.py +1 -5
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/channel_config_widget.py +0 -1
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/condensate_config_widget.py +0 -4
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/laser_config_widget.py +56 -11
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/utility_widgets/toggleswitch_widget.py +0 -2
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/windows/configuration_window.py +0 -4
- {ams_bp-0.4.40 → ams_bp-0.4.42}/uv.lock +1 -1
- ams_bp-0.4.40/docs/API_Documentation/core/groundtruth_generators/nuclearporecomplexes.md +0 -1
- ams_bp-0.4.40/examples/QuantitativeExperiments/FRAP/FRAP_methods.ipynb +0 -1028
- ams_bp-0.4.40/examples/QuantitativeExperiments/PALM/fPALM/npc_palm.ipynb +0 -1084
- ams_bp-0.4.40/examples/QuantitativeExperiments/TwoColor/Confocal/confocal_twocolor.ipynb +0 -1407
- ams_bp-0.4.40/examples/QuantitativeExperiments/TwoColor/Widefield/widefield_twocolor.ipynb +0 -1436
- ams_bp-0.4.40/examples/VisualizingIndividualModules/laser_modulation.ipynb +0 -1087
- ams_bp-0.4.40/examples/VisualizingIndividualModules/modules_explained.ipynb +0 -1468
- {ams_bp-0.4.40 → ams_bp-0.4.42}/.github/workflows/lint.yml +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/.github/workflows/pages.yml +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/.gitignore +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/LICENSE +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/configio/configmodels.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/configio/convertconfig.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/configio/experiments.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/configio/saving.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/metadata/metadata.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/motion/condensate_movement.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/motion/movement/boundary_conditions.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/motion/movement/fbm_BP.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/motion/track_gen.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/optics/camera/detectors.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/optics/camera/quantum_eff.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/optics/filters/channels/channelschema.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/optics/filters/filters.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/optics/lasers/laser_profiles.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/optics/psf/psf_engine.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/photophysics/photon_physics.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/photophysics/state_kinetics.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/probabilityfuncs/markov_chain.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/probabilityfuncs/probability_functions.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/sample/flurophore/flurophore_schema.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/sample/sim_sampleplane.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/core/sim_microscopy.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/main_cli.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/sim_config.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/utils/constants.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/utils/errors.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/API_Documentation/utils/util_functions.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/assets/buttons/ButtonFigure_FRAP.svg +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/assets/buttons/ButtonFigure_fPALM_NPC.svg +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/assets/buttons/ButtonFigure_sptPALM_mmaple.svg +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/assets/buttons/ButtonFigure_zstack_twocolor_confocal.svg +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/assets/buttons/ButtonFigure_zstack_twocolor_widefield.svg +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/assets/figures/Fig1_Schema.svg +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/assets/icons/Cells-actin-like-a-tree-Jamie-Whitelaw-1.png +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/assets/icons/drawing.pdf +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/assets/icons/drawing.png +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/assets/icons/drawing.svg +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/docs/index.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/examples/QuantitativeExperiments/FRAP/FRAP_base_[[0. 0.]].txt +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/examples/QuantitativeExperiments/FRAP/FRAP_base_[[0.04 0.04]].txt +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/examples/QuantitativeExperiments/FRAP/FRAP_base_[[0.1 0.1]].txt +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/examples/QuantitativeExperiments/FRAP/FRAP_base_[[0.4 0.4]].txt +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/examples/QuantitativeExperiments/FRAP/FRAP_data_[[0. 0.]].txt +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/examples/QuantitativeExperiments/FRAP/FRAP_data_[[0.04 0.04]].txt +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/examples/QuantitativeExperiments/FRAP/FRAP_data_[[0.1 0.1]].txt +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/examples/QuantitativeExperiments/FRAP/FRAP_data_[[0.4 0.4]].txt +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/examples/QuantitativeExperiments/MotionModels/groundtruth_boundedfbm.ipynb +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/examples/QuantitativeExperiments/PALM/fPALM/export_full2_0039_039.csv +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/mkdocs.yml +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/pyproject.toml +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/pytest.ini +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/cells/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/cells/budding_yeast_cell.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/cells/cell_factory.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/configio/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/configio/configmodels.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/configio/experiments.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/configio/saving.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/groundtruth_generators/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/groundtruth_generators/nuclearporecomplexes.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/metadata/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/metadata/metadata.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/motion/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/motion/condensate_movement.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/motion/movement/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/motion/movement/boundary_conditions.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/motion/track_gen.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/optics/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/optics/camera/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/optics/camera/detectors.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/optics/camera/quantum_eff.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/optics/filters/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/optics/filters/channels/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/optics/filters/channels/channelschema.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/optics/filters/filters.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/optics/lasers/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/optics/lasers/laser_profiles.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/optics/lasers/scanning_patterns.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/optics/psf/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/optics/psf/psf_engine.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/photophysics/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/photophysics/state_kinetics.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/probabilityfuncs/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/probabilityfuncs/markov_chain.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/probabilityfuncs/probability_functions.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/run_sim_util.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/sample/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/sample/flurophores/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/sample/flurophores/flurophore_schema.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/core/sample/sim_sampleplane.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/README.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/assets/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/assets/drawing.svg +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/help_docs/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/help_docs/cell_help.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/help_docs/channels_help.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/help_docs/condensate_help.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/help_docs/detector_help.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/help_docs/experiment_help.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/help_docs/fluorophore_help.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/help_docs/general_help.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/help_docs/global_help.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/help_docs/laser_help.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/help_docs/molecule_help.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/help_docs/output_help.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/help_docs/psf_help.md +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/sim_worker.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/themes/dark_theme.qss +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/themes/light_theme.qss +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/cell_config_widget.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/experiment_config_widget.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/flurophore_config_widget.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/general_config_widget.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/global_config_widget.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/molecule_config_widget.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/output_config_widget.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/psf_config_widget.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/utility_widgets/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/utility_widgets/scinotation_widget.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/widgets/utility_widgets/spectrum_widget.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/windows/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/windows/help_window.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/windows/logging_window.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/gui/windows/template_window_selection.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/main_cli.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/resources/template_configs/metadata_configs.json +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/resources/template_configs/sim_config.toml +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/resources/template_configs/twocolor_confocal_timeseries_live.toml +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/resources/template_configs/twocolor_confocal_zstack_fixed.toml +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/resources/template_configs/twocolor_confocal_zstack_live.toml +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/resources/template_configs/twocolor_widefield_timeseries_live.toml +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/resources/template_configs/twocolor_widefield_zstack_fixed.toml +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/resources/template_configs/twocolor_widefield_zstack_live.toml +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/tools/logging/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/tools/logging/logutil.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/tools/logging/setup_run_directory.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/utils/__init__.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/utils/constants.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/utils/decorators.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/utils/errors.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/utils/maskMaker.py +0 -0
- {ams_bp-0.4.40 → ams_bp-0.4.42}/src/AMS_BP/utils/util_functions.py +0 -0
@@ -54,12 +54,12 @@ jobs:
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Sign the Python 🐍 distribution 📦 with Sigstore
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and upload them to GitHub Release
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needs:
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-
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- publish-to-pypi
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runs-on: ubuntu-latest
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permissions:
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contents: write #
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id-token: write #
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contents: write # mandatory for making GitHub Releases
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id-token: write # mandatory for sigstore
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steps:
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- name: Download all the dists
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with:
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name: python-package-distributions
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path: dist/
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+
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- name: Sign the dists with Sigstore
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uses: sigstore/gh-action-sigstore-python@v3.0.0
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with:
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inputs: >-
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./dist/*.tar.gz
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./dist/*.whl
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- name: Generate Changelog
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id: changelog
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run: |
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git fetch --tags
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PREV_TAG=$(git describe --tags --abbrev=0 HEAD^)
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CURRENT_TAG=$(git describe --tags --abbrev=0 HEAD)
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echo "Previous tag: $PREV_TAG"
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echo "Current tag: $CURRENT_TAG"
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echo "## Changes" > changelog.txt
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echo "" >> changelog.txt
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git log $PREV_TAG..$CURRENT_TAG --pretty=format:"- %s (%h)" >> changelog.txt
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echo 'changelog<<EOF' >> $GITHUB_ENV
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cat changelog.txt >> $GITHUB_ENV
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echo 'EOF' >> $GITHUB_ENV
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+
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- name: Create GitHub Release
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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changelog: ${{ env.changelog }}
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run: >-
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gh release create
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'${{ github.ref_name }}'
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--repo '${{ github.repository }}'
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-
--notes ""
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--notes "${changelog}"
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+
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- name: Upload artifact signatures to GitHub Release
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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-
# Upload to GitHub Release using the `gh` CLI.
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# `dist/` contains the built packages, and the
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-
# sigstore-produced signatures and certificates.
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run: >-
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gh release upload
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'${{ github.ref_name }}' dist/**
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.4
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Name: AMS_BP
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-
Version: 0.4.
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Version: 0.4.42
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Summary: Advanced Microscopy Simulations developed for the Weber Lab by Baljyot Singh Parmar
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Project-URL: Documentation, https://joemans3.github.io/AMS_BP/
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Project-URL: Source code, https://github.com/joemans3/AMS_BP
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@@ -125,6 +125,7 @@ To start the GUI, run:
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run_AMS_BP gui
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```
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Please note, the first time the package is used it will take a minute to start.
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For detailed walkthrough see the [GUI Documentation](./src/AMS_BP/gui/README.md).
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## Configuration File
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@@ -0,0 +1 @@
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1
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::: AMS_BP.core.groundtruth_generators.nuclearporecomplexes
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