AMS-BP 0.4.31__tar.gz → 0.4.41__tar.gz

{ams_bp-0.4.31 → ams_bp-0.4.41}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: AMS_BP
-Version: 0.4.31
+Version: 0.4.41
 Summary: Advanced Microscopy Simulations developed for the Weber Lab by Baljyot Singh Parmar
 Project-URL: Documentation, https://joemans3.github.io/AMS_BP/
 Project-URL: Source code, https://github.com/joemans3/AMS_BP
@@ -44,7 +44,11 @@ Find detailed API references for the library at: [joemans3/github.io/AMS_BP](htt
 
 ## Examples (Click on the image buttons to be taken to the Jupyter notebooks):
 
-> !!ATTENTION!! - Please note that you NEED to install the developmental dependencies to run the examples in full. This is mainly for installing the Jupyter notebook extensions, matplotlib and other visualization packages.
+> !!ATTENTION!! - Please note that you NEED to install the optional dependencies to run the examples in full. This is mainly for installing the Jupyter notebook extensions, matplotlib and other visualization packages. In whatever environment you install this package, make sure to install with all dependencies. As an example, for UV this would be evoking: 
+```bash
+uv sync --all-extras
+```
+while inside the root of the project, for syncing the environment.
 
 [<img src="./docs/assets/buttons/ButtonFigure_FRAP.svg" width="300" height="120"/>](./examples/QuantitativeExperiments/FRAP/FRAP_methods.ipynb) [<img src="./docs/assets/buttons/ButtonFigure_fPALM_NPC.svg" width="300"/>](./examples/QuantitativeExperiments/PALM/fPALM/npc_palm.ipynb)
 
@@ -121,6 +125,7 @@ To start the GUI, run:
 
 run_AMS_BP gui
 ```
+Please note, the first time the package is used it will take a minute to start.
 For detailed walkthrough see the [GUI Documentation](./src/AMS_BP/gui/README.md).
 ## Configuration File
 

{ams_bp-0.4.31 → ams_bp-0.4.41}/README.md

@@ -18,7 +18,11 @@ Find detailed API references for the library at: [joemans3/github.io/AMS_BP](htt
 
 ## Examples (Click on the image buttons to be taken to the Jupyter notebooks):
 
-> !!ATTENTION!! - Please note that you NEED to install the developmental dependencies to run the examples in full. This is mainly for installing the Jupyter notebook extensions, matplotlib and other visualization packages.
+> !!ATTENTION!! - Please note that you NEED to install the optional dependencies to run the examples in full. This is mainly for installing the Jupyter notebook extensions, matplotlib and other visualization packages. In whatever environment you install this package, make sure to install with all dependencies. As an example, for UV this would be evoking: 
+```bash
+uv sync --all-extras
+```
+while inside the root of the project, for syncing the environment.
 
 [<img src="./docs/assets/buttons/ButtonFigure_FRAP.svg" width="300" height="120"/>](./examples/QuantitativeExperiments/FRAP/FRAP_methods.ipynb) [<img src="./docs/assets/buttons/ButtonFigure_fPALM_NPC.svg" width="300"/>](./examples/QuantitativeExperiments/PALM/fPALM/npc_palm.ipynb)
 
@@ -95,6 +99,7 @@ To start the GUI, run:
 
 run_AMS_BP gui
 ```
+Please note, the first time the package is used it will take a minute to start.
 For detailed walkthrough see the [GUI Documentation](./src/AMS_BP/gui/README.md).
 ## Configuration File
 

ams_bp-0.4.41/docs/API_Documentation/core/groundtruth_generators/nuclearporecomplexes.md

@@ -0,0 +1 @@
+::: AMS_BP.core.groundtruth_generators.nuclearporecomplexes