AMS-BP 0.0.24__tar.gz → 0.0.25__tar.gz

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Files changed (108) hide show
  1. {ams_bp-0.0.24 → ams_bp-0.0.25}/PKG-INFO +1 -1
  2. ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_base_[[0. 0.]].txt +10 -0
  3. ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_base_[[0.04 0.04]].txt +10 -0
  4. ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_base_[[0.1 0.1]].txt +10 -0
  5. ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_base_[[0.4 0.4]].txt +10 -0
  6. ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_data_[[0. 0.]].txt +10 -0
  7. ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_data_[[0.04 0.04]].txt +10 -0
  8. ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_data_[[0.1 0.1]].txt +10 -0
  9. ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_data_[[0.4 0.4]].txt +10 -0
  10. ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_methods.ipynb +1025 -0
  11. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/__init__.py +1 -1
  12. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/optics/lasers/laser_profiles.py +1 -1
  13. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/sim_microscopy.py +3 -1
  14. {ams_bp-0.0.24 → ams_bp-0.0.25}/.github/workflows/lint.yml +0 -0
  15. {ams_bp-0.0.24 → ams_bp-0.0.25}/.github/workflows/pages.yml +0 -0
  16. {ams_bp-0.0.24 → ams_bp-0.0.25}/.github/workflows/publish_pypi.yml +0 -0
  17. {ams_bp-0.0.24 → ams_bp-0.0.25}/.gitignore +0 -0
  18. {ams_bp-0.0.24 → ams_bp-0.0.25}/LICENSE +0 -0
  19. {ams_bp-0.0.24 → ams_bp-0.0.25}/README.md +0 -0
  20. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/cells/base_cell.md +0 -0
  21. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/cells/rectangular_cell.md +0 -0
  22. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/cells/rod_cell.md +0 -0
  23. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/cells/spherical_cell.md +0 -0
  24. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/configio/configmodels.md +0 -0
  25. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/configio/convertconfig.md +0 -0
  26. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/configio/experiments.md +0 -0
  27. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/configio/saving.md +0 -0
  28. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/metadata/metadata.md +0 -0
  29. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/motion/condensate_movement.md +0 -0
  30. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/motion/movement/boundary_conditions.md +0 -0
  31. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/motion/movement/fbm_BP.md +0 -0
  32. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/motion/track_gen.md +0 -0
  33. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/optics/camera/detectors.md +0 -0
  34. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/optics/camera/quantum_eff.md +0 -0
  35. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/optics/filters/channels/channelschema.md +0 -0
  36. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/optics/filters/filters.md +0 -0
  37. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/optics/lasers/laser_profiles.md +0 -0
  38. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/optics/psf/psf_engine.md +0 -0
  39. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/photophysics/photon_physics.md +0 -0
  40. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/photophysics/state_kinetics.md +0 -0
  41. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/probabilityfuncs/markov_chain.md +0 -0
  42. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/probabilityfuncs/probability_functions.md +0 -0
  43. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/run_cell_simulation.md +0 -0
  44. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/sample/flurophore/flurophore_schema.md +0 -0
  45. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/sample/sim_sampleplane.md +0 -0
  46. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/sim_config.md +0 -0
  47. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/sim_microscopy.md +0 -0
  48. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/utils/constants.md +0 -0
  49. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/utils/errors.md +0 -0
  50. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/API_Documentation/utils/util_functions.md +0 -0
  51. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/assets/icons/Cells-actin-like-a-tree-Jamie-Whitelaw-1.png +0 -0
  52. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/assets/icons/drawing.pdf +0 -0
  53. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/assets/icons/drawing.png +0 -0
  54. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/assets/icons/drawing.svg +0 -0
  55. {ams_bp-0.0.24 → ams_bp-0.0.25}/docs/index.md +0 -0
  56. {ams_bp-0.0.24 → ams_bp-0.0.25}/examples/VisualizingIndividualModules/laser_modulation.ipynb +0 -0
  57. {ams_bp-0.0.24 → ams_bp-0.0.25}/examples/VisualizingIndividualModules/modules_explained.ipynb +0 -0
  58. {ams_bp-0.0.24 → ams_bp-0.0.25}/mkdocs.yml +0 -0
  59. {ams_bp-0.0.24 → ams_bp-0.0.25}/pyproject.toml +0 -0
  60. {ams_bp-0.0.24 → ams_bp-0.0.25}/pytest.ini +0 -0
  61. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/cells/__init__.py +0 -0
  62. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/cells/base_cell.py +0 -0
  63. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/cells/rectangular_cell.py +0 -0
  64. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/cells/rod_cell.py +0 -0
  65. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/cells/spherical_cell.py +0 -0
  66. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/configio/__init__.py +0 -0
  67. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/configio/configmodels.py +0 -0
  68. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/configio/convertconfig.py +0 -0
  69. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/configio/experiments.py +0 -0
  70. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/configio/saving.py +0 -0
  71. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/metadata/__init__.py +0 -0
  72. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/metadata/metadata.py +0 -0
  73. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/motion/__init__.py +0 -0
  74. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/motion/condensate_movement.py +0 -0
  75. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/motion/movement/__init__.py +0 -0
  76. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/motion/movement/boundary_conditions.py +0 -0
  77. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/motion/movement/fbm_BP.py +0 -0
  78. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/motion/track_gen.py +0 -0
  79. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/optics/__init__.py +0 -0
  80. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/optics/camera/__init__.py +0 -0
  81. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/optics/camera/detectors.py +0 -0
  82. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/optics/camera/quantum_eff.py +0 -0
  83. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/optics/filters/__init__.py +0 -0
  84. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/optics/filters/channels/__init__.py +0 -0
  85. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/optics/filters/channels/channelschema.py +0 -0
  86. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/optics/filters/filters.py +0 -0
  87. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/optics/lasers/__init__.py +0 -0
  88. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/optics/psf/__init__.py +0 -0
  89. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/optics/psf/psf_engine.py +0 -0
  90. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/photophysics/__init__.py +0 -0
  91. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/photophysics/photon_physics.py +0 -0
  92. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/photophysics/state_kinetics.py +0 -0
  93. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/probabilityfuncs/__init__.py +0 -0
  94. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/probabilityfuncs/markov_chain.py +0 -0
  95. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/probabilityfuncs/probability_functions.py +0 -0
  96. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/run_cell_simulation.py +0 -0
  97. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/sample/__init__.py +0 -0
  98. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/sample/flurophores/__init__.py +0 -0
  99. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/sample/flurophores/flurophore_schema.py +0 -0
  100. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/sample/sim_sampleplane.py +0 -0
  101. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/sim_config.toml +0 -0
  102. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/utils/__init__.py +0 -0
  103. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/utils/constants.py +0 -0
  104. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/utils/decorators.py +0 -0
  105. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/utils/errors.py +0 -0
  106. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/utils/maskMaker.py +0 -0
  107. {ams_bp-0.0.24 → ams_bp-0.0.25}/src/AMS_BP/utils/util_functions.py +0 -0
  108. {ams_bp-0.0.24 → ams_bp-0.0.25}/uv.lock +0 -0
{ams_bp-0.0.24 → ams_bp-0.0.25}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: AMS_BP
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- Version: 0.0.24
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+ Version: 0.0.25
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  Summary: Advanced Microscopy Simulations developed for the Weber Lab by Baljyot Singh Parmar
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  Project-URL: Documentation, https://joemans3.github.io/AMS_BP/
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  Project-URL: Source code, https://github.com/joemans3/AMS_BP
ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_base_[[0. 0.]].txt ADDED
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