AMS-BP 0.0.231__tar.gz → 0.0.251__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {ams_bp-0.0.231 → ams_bp-0.0.251}/PKG-INFO +3 -1
- {ams_bp-0.0.231 → ams_bp-0.0.251}/README.md +2 -0
- ams_bp-0.0.251/examples/QuantitativeExperiments/FRAP_base_[[0. 0.]].txt +10 -0
- ams_bp-0.0.251/examples/QuantitativeExperiments/FRAP_base_[[0.04 0.04]].txt +10 -0
- ams_bp-0.0.251/examples/QuantitativeExperiments/FRAP_base_[[0.1 0.1]].txt +10 -0
- ams_bp-0.0.251/examples/QuantitativeExperiments/FRAP_base_[[0.4 0.4]].txt +10 -0
- ams_bp-0.0.251/examples/QuantitativeExperiments/FRAP_data_[[0. 0.]].txt +10 -0
- ams_bp-0.0.251/examples/QuantitativeExperiments/FRAP_data_[[0.04 0.04]].txt +10 -0
- ams_bp-0.0.251/examples/QuantitativeExperiments/FRAP_data_[[0.1 0.1]].txt +10 -0
- ams_bp-0.0.251/examples/QuantitativeExperiments/FRAP_data_[[0.4 0.4]].txt +10 -0
- ams_bp-0.0.251/examples/QuantitativeExperiments/FRAP_methods.ipynb +1025 -0
- ams_bp-0.0.251/examples/VisualizingIndividualModules/laser_modulation.ipynb +1094 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/__init__.py +1 -1
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/optics/lasers/laser_profiles.py +5 -168
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/photophysics/state_kinetics.py +4 -1
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/sim_microscopy.py +3 -1
- {ams_bp-0.0.231 → ams_bp-0.0.251}/.github/workflows/lint.yml +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/.github/workflows/pages.yml +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/.github/workflows/publish_pypi.yml +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/.gitignore +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/LICENSE +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/cells/base_cell.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/cells/rectangular_cell.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/cells/rod_cell.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/cells/spherical_cell.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/configio/configmodels.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/configio/convertconfig.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/configio/experiments.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/configio/saving.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/metadata/metadata.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/motion/condensate_movement.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/motion/movement/boundary_conditions.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/motion/movement/fbm_BP.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/motion/track_gen.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/optics/camera/detectors.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/optics/camera/quantum_eff.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/optics/filters/channels/channelschema.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/optics/filters/filters.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/optics/lasers/laser_profiles.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/optics/psf/psf_engine.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/photophysics/photon_physics.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/photophysics/state_kinetics.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/probabilityfuncs/markov_chain.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/probabilityfuncs/probability_functions.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/run_cell_simulation.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/sample/flurophore/flurophore_schema.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/sample/sim_sampleplane.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/sim_config.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/sim_microscopy.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/utils/constants.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/utils/errors.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/API_Documentation/utils/util_functions.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/assets/icons/Cells-actin-like-a-tree-Jamie-Whitelaw-1.png +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/assets/icons/drawing.pdf +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/assets/icons/drawing.png +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/assets/icons/drawing.svg +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/docs/index.md +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/examples/VisualizingIndividualModules/modules_explained.ipynb +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/mkdocs.yml +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/pyproject.toml +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/pytest.ini +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/cells/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/cells/base_cell.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/cells/rectangular_cell.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/cells/rod_cell.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/cells/spherical_cell.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/configio/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/configio/configmodels.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/configio/convertconfig.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/configio/experiments.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/configio/saving.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/metadata/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/metadata/metadata.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/motion/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/motion/condensate_movement.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/motion/movement/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/motion/movement/boundary_conditions.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/motion/movement/fbm_BP.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/motion/track_gen.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/optics/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/optics/camera/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/optics/camera/detectors.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/optics/camera/quantum_eff.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/optics/filters/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/optics/filters/channels/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/optics/filters/channels/channelschema.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/optics/filters/filters.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/optics/lasers/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/optics/psf/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/optics/psf/psf_engine.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/photophysics/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/photophysics/photon_physics.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/probabilityfuncs/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/probabilityfuncs/markov_chain.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/probabilityfuncs/probability_functions.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/run_cell_simulation.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/sample/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/sample/flurophores/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/sample/flurophores/flurophore_schema.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/sample/sim_sampleplane.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/sim_config.toml +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/utils/__init__.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/utils/constants.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/utils/decorators.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/utils/errors.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/utils/maskMaker.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/src/AMS_BP/utils/util_functions.py +0 -0
- {ams_bp-0.0.231 → ams_bp-0.0.251}/uv.lock +0 -0
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Metadata-Version: 2.4
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Name: AMS_BP
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Version: 0.0.
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Version: 0.0.251
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Summary: Advanced Microscopy Simulations developed for the Weber Lab by Baljyot Singh Parmar
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Project-URL: Documentation, https://joemans3.github.io/AMS_BP/
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Project-URL: Source code, https://github.com/joemans3/AMS_BP
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from AMS_BP.configio.saving import save_config_frames
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save_config_frames(metadata, frames, setup_config["base_config"].OutputParameters)
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```
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> A more detailed example is provided in the jupyter notebook in the examples. For starters refer to the [VisualizingIndividualModules](examples/VisualizingIndividualModules/modules_explained.ipynb). Then head over to the [laser modulation module](examples/VisualizingIndividualModules/laser_modulation.ipynb) which will show how to change the laser power over time in the simulations. Then view an example of a complex experiment setup for [FRAP](examples/QuantitativeExperiments/FRAP_methods.ipynb) which is possible by the use of compositions of modules in this simulation library.
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save_config_frames(metadata, frames, setup_config["base_config"].OutputParameters)
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```
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> A more detailed example is provided in the jupyter notebook in the examples. For starters refer to the [VisualizingIndividualModules](examples/VisualizingIndividualModules/modules_explained.ipynb). Then head over to the [laser modulation module](examples/VisualizingIndividualModules/laser_modulation.ipynb) which will show how to change the laser power over time in the simulations. Then view an example of a complex experiment setup for [FRAP](examples/QuantitativeExperiments/FRAP_methods.ipynb) which is possible by the use of compositions of modules in this simulation library.
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