AMS-BP 0.0.22__tar.gz → 0.0.25__tar.gz

{ams_bp-0.0.22 → ams_bp-0.0.25}/.github/workflows/lint.yml

@@ -21,6 +21,5 @@ jobs:
       # Update output format to enable automatic inline annotations.
       - name: Run Ruff
         run: |
-          ruff check --fix
           ruff format
           ruff format --check --diff

{ams_bp-0.0.22 → ams_bp-0.0.25}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: AMS_BP
-Version: 0.0.22
+Version: 0.0.25
 Summary: Advanced Microscopy Simulations developed for the Weber Lab by Baljyot Singh Parmar
 Project-URL: Documentation, https://joemans3.github.io/AMS_BP/
 Project-URL: Source code, https://github.com/joemans3/AMS_BP
@@ -10,7 +10,6 @@ License-File: LICENSE
 Keywords: SMS
 Requires-Python: >=3.10
 Requires-Dist: jsonschema>=4.23.0
-Requires-Dist: matplotlib>=3.6.0
 Requires-Dist: numpy>=1.21.2
 Requires-Dist: pydantic>=2.9.2
 Requires-Dist: scikit-image>=0.18.3
@@ -172,3 +171,5 @@ frames, metadata = function_exp(microscope=microscope, config=config_exp)
 from AMS_BP.configio.saving import save_config_frames
 save_config_frames(metadata, frames, setup_config["base_config"].OutputParameters)
 ```
+
+> A more detailed example is provided in the jupyter notebook in the examples. For starters refer to the [VisualizingIndividualModules](examples/VisualizingIndividualModules/modules_explained.ipynb)

{ams_bp-0.0.22 → ams_bp-0.0.25}/README.md

@@ -151,3 +151,5 @@ frames, metadata = function_exp(microscope=microscope, config=config_exp)
 from AMS_BP.configio.saving import save_config_frames
 save_config_frames(metadata, frames, setup_config["base_config"].OutputParameters)
 ```
+
+> A more detailed example is provided in the jupyter notebook in the examples. For starters refer to the [VisualizingIndividualModules](examples/VisualizingIndividualModules/modules_explained.ipynb)

{ams_bp-0.0.22 → ams_bp-0.0.25}/docs/API_Documentation/configio/configmodels.md

@@ -41,18 +41,10 @@ class MoleculeParameters(BaseModel)
   - Description: Diffusion coefficients in μm²/s
   - 2D array automatically converted to numpy array
 
-- `diffusion_track_amount: List[List[float]]`
-  - Description: Amount of diffusive tracking for each state
-  - 2D array automatically converted to numpy array
-
 - `hurst_exponent: List[List[float]]`
   - Description: Hurst exponents for fractional Brownian motion
   - 2D array automatically converted to numpy array
 
-- `hurst_track_amount: List[List[float]]`
-  - Description: Amount of Hurst tracking for each state
-  - 2D array automatically converted to numpy array
-
 - `allow_transition_probability: List[bool]`
   - Description: Whether to allow state transitions
 

ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_base_[[0. 0.]].txt

@@ -0,0 +1,10 @@
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ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_base_[[0.04 0.04]].txt

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ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_base_[[0.1 0.1]].txt

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ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_base_[[0.4 0.4]].txt

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ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_data_[[0. 0.]].txt

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ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_data_[[0.04 0.04]].txt

@@ -0,0 +1,10 @@
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ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_data_[[0.1 0.1]].txt

@@ -0,0 +1,10 @@
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ams_bp-0.0.25/examples/QuantitativeExperiments/FRAP_data_[[0.4 0.4]].txt

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