ACBICI 2.1.0__tar.gz

acbici-2.1.0/LICENSE

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+BSD-3-Clause License
+
+Copyright (c) 2025, Fundación IMDEA Materiales (IMDEA Materials Institute), Getafe, Madrid, Spain and Universidad Politécnica de Madrid (UPM), Madrid, Spain
+
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

acbici-2.1.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: ACBICI
+Version: 2.1.0
+Summary: A Configurable BayesIan Calibration and Inference package
+Author: Christina Schenk, Ignacio Romero
+License: BSD-3-Clause License
+        
+        Copyright (c) 2025, Fundación IMDEA Materiales (IMDEA Materials Institute), Getafe, Madrid, Spain and Universidad Politécnica de Madrid (UPM), Madrid, Spain
+        
+        All rights reserved.
+        
+        Redistribution and use in source and binary forms, with or without
+        modification, are permitted provided that the following conditions are met:
+        
+        1. Redistributions of source code must retain the above copyright notice, this
+           list of conditions and the following disclaimer.
+        
+        2. Redistributions in binary form must reproduce the above copyright notice,
+           this list of conditions and the following disclaimer in the documentation
+           and/or other materials provided with the distribution.
+        
+        3. Neither the name of the copyright holder nor the names of its
+           contributors may be used to endorse or promote products derived from
+           this software without specific prior written permission.
+        
+        THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+        AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+        IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+        DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+        FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+        DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+        SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+        CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+        OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+        OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+        
+Project-URL: Homepage, https://gitlab.com/schenkch/ACBICI
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Requires-Python: >=3.9
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: matplotlib
+Requires-Dist: scipy
+Requires-Dist: pyDOE
+Requires-Dist: emcee
+Requires-Dist: corner
+Requires-Dist: pyvbmc
+Requires-Dist: tqdm
+Requires-Dist: sphinx
+Requires-Dist: sphinx-rtd-theme
+Requires-Dist: sphinx-math-dollar
+Requires-Dist: seaborn
+Requires-Dist: SALib
+Dynamic: license-file
+
+# <img alt="ACBICI" src="branding/ACBICI_Logo.svg" height="80">
+
+[![License](https://img.shields.io/gitlab/license/schenkch/ACBICI?cacheSeconds=300)](https://gitlab.com/schenkch/ACBICI/-/blob/master/LICENSE)
+[![Last Commit](https://img.shields.io/gitlab/last-commit/schenkch/ACBICI)](https://gitlab.com/schenkch/ACBICI/)
+[![Documentation Status](https://readthedocs.org/projects/acbici/badge/?version=latest)](https://acbici.readthedocs.io/en/latest/py-modindex.html)
+
+ACBICI (A Configurable BayesIan Calibration and Inference package) is a Python package designed to calibrate models including uncertainty estimates.
+
+- **Documentation:** - https://acbici.readthedocs.io / Alternatively can be compiled following the instructions in docs/ReadmeDoc.txt file.  
+- **Examples and Tutorials** - https://gitlab.com/schenkch/acbici/tree/master/examples
+- **Source code:** - https://gitlab.com/schenkch/acbici/tree/master/src/ACBICI
+- **Bug reports:** - https://gitlab.com/schenkch/acbici/issues
+
+
+It has the following functionality:
+ - Bayesian calibration
+ - provide distribution for the model parameters
+ - estimate aleatoric and epistemic uncertainty
+ - Gaussian process surrogate models for faster predictions
+ - visualization of results
+
+<br>
+
+
+
+## Installation
+    Before installing ACBICI, you need to install make, git and one of the tested Python versions (3.9, 3.12, 3.13, 3.14).
+
+    Then, if using Python for other purposes than ACBICI, it is recommended to use a virtual environment, you can create one for example via:
+    - python3 -m venv acbici_env
+    or:
+    - virtualenv acbici_env
+    Then activate the virtual environment by:
+    - source acbici_env/bin/activate
+
+    Upgrade packaging tools (recommended):
+    pip install --upgrade pip setuptools wheel
+
+    or with Anaconda (Windows) in the Anaconda prompt to create a virtual environment:
+    - conda create -n myenv python=3.14
+    Then to activate it:
+    - conda activate myenv
+
+    Next you can install ACBICI in this virtual environment:
+    Either:
+    Go to the folder where you want to install it via: cd "installation_directory"
+    Clone and install the repo into that folder in the following way:
+    - git clone https://gitlab.com/schenkch/ACBICI.git
+    - cd ACBICI
+    - pip install -e .
+    Or:
+    Install as an already built pip package via:
+    pip install ACBICI (pending)
+
+
+
+
+### Examples and Tutorials
+
+The example problems are in the examples subfolder at https://gitlab.com/schenkch/acbici/tree/master/examples.
+
+    To run all the examples and test their correctness, open a terminal and change into the `examples` directory of the downloaded repository:
+    cd examples
+
+    Execute the following command:
+    make
+
+This will trigger the build process defined in the Makefile and run all the example problems within the folder.
+This may take some time but if everything is set up correctly and all dependencies are satisfied, you should see output indicating whether each example has passed or failed.
+In addition, each example subfolder contains a make file for automatic clean up of old results.
+
+
+
+## License
+
+BSD-3
+
+
+
+## Authors
+
+    - Christina Schenk - IMDEA Materials Institute
+    - Ignacio Romero - UPM, IMDEA Materials Institute
+
+
+## Acknowledgements
+
+    - Yufei Liu - IMDEA Materials Institute
+
+
+
+## Please cite
+<br>
+
+    - https://gitlab.com/schenkch/ACBICI.git
+    - C. Schenk, I. Romero (2026): A Framework for the Bayesian Calibration of Complex and Data-Scarce Models in Applied Sciences

acbici-2.1.0/README.md

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+# <img alt="ACBICI" src="branding/ACBICI_Logo.svg" height="80">
+
+[![License](https://img.shields.io/gitlab/license/schenkch/ACBICI?cacheSeconds=300)](https://gitlab.com/schenkch/ACBICI/-/blob/master/LICENSE)
+[![Last Commit](https://img.shields.io/gitlab/last-commit/schenkch/ACBICI)](https://gitlab.com/schenkch/ACBICI/)
+[![Documentation Status](https://readthedocs.org/projects/acbici/badge/?version=latest)](https://acbici.readthedocs.io/en/latest/py-modindex.html)
+
+ACBICI (A Configurable BayesIan Calibration and Inference package) is a Python package designed to calibrate models including uncertainty estimates.
+
+- **Documentation:** - https://acbici.readthedocs.io / Alternatively can be compiled following the instructions in docs/ReadmeDoc.txt file.  
+- **Examples and Tutorials** - https://gitlab.com/schenkch/acbici/tree/master/examples
+- **Source code:** - https://gitlab.com/schenkch/acbici/tree/master/src/ACBICI
+- **Bug reports:** - https://gitlab.com/schenkch/acbici/issues
+
+
+It has the following functionality:
+ - Bayesian calibration
+ - provide distribution for the model parameters
+ - estimate aleatoric and epistemic uncertainty
+ - Gaussian process surrogate models for faster predictions
+ - visualization of results
+
+<br>
+
+
+
+## Installation
+    Before installing ACBICI, you need to install make, git and one of the tested Python versions (3.9, 3.12, 3.13, 3.14).
+
+    Then, if using Python for other purposes than ACBICI, it is recommended to use a virtual environment, you can create one for example via:
+    - python3 -m venv acbici_env
+    or:
+    - virtualenv acbici_env
+    Then activate the virtual environment by:
+    - source acbici_env/bin/activate
+
+    Upgrade packaging tools (recommended):
+    pip install --upgrade pip setuptools wheel
+
+    or with Anaconda (Windows) in the Anaconda prompt to create a virtual environment:
+    - conda create -n myenv python=3.14
+    Then to activate it:
+    - conda activate myenv
+
+    Next you can install ACBICI in this virtual environment:
+    Either:
+    Go to the folder where you want to install it via: cd "installation_directory"
+    Clone and install the repo into that folder in the following way:
+    - git clone https://gitlab.com/schenkch/ACBICI.git
+    - cd ACBICI
+    - pip install -e .
+    Or:
+    Install as an already built pip package via:
+    pip install ACBICI (pending)
+
+
+
+
+### Examples and Tutorials
+
+The example problems are in the examples subfolder at https://gitlab.com/schenkch/acbici/tree/master/examples.
+
+    To run all the examples and test their correctness, open a terminal and change into the `examples` directory of the downloaded repository:
+    cd examples
+
+    Execute the following command:
+    make
+
+This will trigger the build process defined in the Makefile and run all the example problems within the folder.
+This may take some time but if everything is set up correctly and all dependencies are satisfied, you should see output indicating whether each example has passed or failed.
+In addition, each example subfolder contains a make file for automatic clean up of old results.
+
+
+
+## License
+
+BSD-3
+
+
+
+## Authors
+
+    - Christina Schenk - IMDEA Materials Institute
+    - Ignacio Romero - UPM, IMDEA Materials Institute
+
+
+## Acknowledgements
+
+    - Yufei Liu - IMDEA Materials Institute
+
+
+
+## Please cite
+<br>
+
+    - https://gitlab.com/schenkch/ACBICI.git
+    - C. Schenk, I. Romero (2026): A Framework for the Bayesian Calibration of Complex and Data-Scarce Models in Applied Sciences

acbici-2.1.0/pyproject.toml

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+[build-system]
+requires = ["setuptools>=68", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "ACBICI"
+description = "A Configurable BayesIan Calibration and Inference package"
+readme = "README.md"
+license = { file="LICENSE" }
+requires-python = ">=3.9"
+
+authors = [
+  { name = "Christina Schenk" },
+  { name = "Ignacio Romero" }
+]
+
+# Your setup.py had only Python version classifiers; you can add license/topic later if you want.
+classifiers = [
+  "Programming Language :: Python :: 3.9",
+  "Programming Language :: Python :: 3.12",
+  "Programming Language :: Python :: 3.13",
+  "Programming Language :: Python :: 3.14",
+]
+
+# This matches install_requires=read_requirements()
+# setuptools will read requirements.txt at build time
+dynamic = ["version", "dependencies"]
+
+[project.urls]
+Homepage = "https://gitlab.com/schenkch/ACBICI"
+
+
+[tool.setuptools.dynamic]
+version = { attr = "ACBICI._version.__version__" }
+dependencies = { file = ["requirements.txt"] }
+
+[tool.setuptools]
+package-dir = {"" = "src"}
+
+[tool.setuptools.packages.find]
+where = ["src"]

acbici-2.1.0/requirements.txt

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+matplotlib
+scipy
+pyDOE
+emcee
+corner
+pyvbmc
+tqdm
+sphinx
+sphinx-rtd-theme
+sphinx-math-dollar
+seaborn
+SALib

acbici-2.1.0/setup.cfg

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+[egg_info]
+tag_build = 
+tag_date = 0
+

acbici-2.1.0/src/ACBICI/__init__.py

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+###############################################################################
+#
+#                                ACBICI   v2.1.0
+#
+#
+#     Copyright (C) 2025 Fundación IMDEA Materiales (IMDEA Materials Institute), Getafe, Madrid, Spain and
+#                        Universidad Politécnica de Madrid (UPM), Madrid, Spain
+#     Contact: christina.schenk@imdea.org, ignacio.romero@imdea.org
+#     Author: Christina Schenk, Ignacio Romero (christina.schenk@imdea.org, ignacio.romero@imdea.org)
+#
+#     This file is part of ACBICI.
+#
+#     # All rights reserved.
+#
+# ACBICI is licensed under the BSD 3-Clause License.
+# You may use, redistribute, and modify this file under the terms of that license.
+# See the LICENSE file in the repository root for full details.
+#
+# THIS SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND.
+#
+###############################################################################
+
+from ._version import __version__
+
+from .calibrator import *
+from .gprocess import *
+from .kernels import *
+from .priors import *
+from .randomprocess import *

acbici-2.1.0/src/ACBICI/_version.py

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+###############################################################################
+#
+#                                ACBICI   v2.1.0
+#
+#
+#     Copyright (C) 2025 Fundación IMDEA Materiales (IMDEA Materials Institute), Getafe, Madrid, Spain and
+#                        Universidad Politécnica de Madrid (UPM), Madrid, Spain
+#     Contact: christina.schenk@imdea.org, ignacio.romero@imdea.org
+#     Author: Christina Schenk, Ignacio Romero (christina.schenk@imdea.org, ignacio.romero@imdea.org)
+#
+#     This file is part of ACBICI.
+#
+#     # All rights reserved.
+#
+# ACBICI is licensed under the BSD 3-Clause License.
+# You may use, redistribute, and modify this file under the terms of that license.
+# See the LICENSE file in the repository root for full details.
+#
+# THIS SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND.
+#
+###############################################################################
+
+__version__ = "2.1.0"