planflow-ai 1.3.2 → 1.3.5

package/.claude/resources/skills/execute-plan-skill.md

@@ -189,17 +189,23 @@ Wait for user confirmation before proceeding.
 1. **Auto-switch to Plan mode** - Call `SwitchMode` tool
 2. **Present phase details** - Show scope, tasks, and approach
 3. **Wait for approval** - Get user confirmation
-4. **Select model tier** - If `model_routing` is enabled in `flow/.flowconfig` (default: `true`):
+4. **Select model tier** - If `model_routing` is enabled in `flow/.flowconfig` (default: `false` — uses the most capable session model):
    - Read the phase's complexity score
    - Look up model tier: **0-3 → Fast (haiku)**, **4-5 → Standard (sonnet)**, **6-10 → Powerful (opus)**
    - For aggregated phases, use the **highest individual phase complexity** to determine the tier
-   - Spawn implementation as an **Agent subagent** with `model={tier}` parameter
-   - Include in Agent prompt: plan file path, current phase details, files modified so far, allowed/forbidden patterns
-   - If `model_routing` is `false` or key is missing, skip routing and implement directly (use session model)
+   - If `model_routing` is `false` or key is missing, skip routing (use the most capable model from the active provider — e.g., opus for Anthropic, o3 for OpenAI)
    - See `.claude/resources/core/model-routing.md` for full tier table, platform mappings, and rules
-5. **Inject design context** - Before implementing, check if the discovery doc (from plan's "Based on Discovery" field) has a `## Design Context` section. If present and the phase involves UI work (see UI Phase Detection Heuristics in `.claude/resources/core/design-awareness.md`), prepend the Design Context to the implementation prompt with: "Follow these design tokens when implementing UI elements. Use the exact color values, typography, and spacing from the Design Context." If no Design Context or phase is not UI-related, skip this step.
-6. **Implement** - Execute the phase following approved approach (via subagent if model routing is active, or directly if not)
-7. **Capture patterns** - While implementing, watch for recurring conventions, anti-patterns, and workarounds. Silently append to `flow/resources/pending-patterns.md`. See `.claude/resources/core/pattern-capture.md` for buffer format and capture triggers.
+5. **Inject design context** - Before implementing, check if the discovery doc (from plan's "Based on Discovery" field) has a `## Design Context` section. If present and the phase involves UI work (see UI Phase Detection Heuristics in `.claude/resources/core/design-awareness.md`), include the Design Context in the implementation prompt. If no Design Context or phase is not UI-related, skip this step.
+6. **Implement (with phase isolation)** - Check `phase_isolation` in `flow/.flowconfig` (default: `true`):
+   - **If `phase_isolation: true`**: Prepare an isolated context prompt and spawn as Agent subagent. See `.claude/resources/core/phase-isolation.md` for the full context template and return format schema. The prompt includes: phase spec (scope + tasks), files modified so far (paths only), pattern file paths (allowed/forbidden), design context (if UI phase), plan file path. The sub-agent returns a structured JSON summary.
+   - **If `phase_isolation: false`**: Execute inline in the main session (legacy behavior). Pattern capture happens inline via step 7.
+   - **Agent spawning** combines model routing AND isolation: use `model={tier}` parameter (from step 4) AND the focused context prompt (from isolation). If model routing is disabled, use session model with isolation. If both are disabled, execute inline.
+7. **Process sub-agent return** (isolation mode only) - Parse the JSON summary returned by the sub-agent:
+   - Check `status` field: `success` → continue; `failure` → present errors to user, ask retry/skip/stop; `partial` → present deviations, ask user
+   - Accumulate `files_created` and `files_modified` into the running file list
+   - Append `patterns_captured` entries to `flow/resources/pending-patterns.md`
+   - Log `decisions` in phase completion message
+   - If inline mode (no isolation), capture patterns directly per `.claude/resources/core/pattern-capture.md`
 8. **Update progress** - Mark tasks complete in plan file
 9. **Record model used** - Track which model tier was used for this phase (for the completion summary)
 10. **Continue to next phase** - NO BUILD between phases
@@ -270,6 +276,8 @@ Run `/compact` with instructions that preserve execution state:
 - After compaction, re-read the plan file and continue from the next phase
 - In autopilot mode, compact automatically without asking — this is a maintenance action, not a user decision
 
+**Compaction Guide**: For detailed preserve/discard rules, see `COR-CG-2` and `COR-CG-3`. Use the summary template from `COR-CG-4` to structure your `/compact` instructions.
+
 ---
 
 ### Step 6: Handle Tests Phase

package/.claude/rules/core/forbidden-patterns.md

@@ -256,4 +256,42 @@ const badExample = problematicCode()
 
 ## Project Anti-Patterns
 
+### 6. DON'T Execute ORM/Database Migration Commands Directly
+
+**Problem**: Running ORM tools (Prisma, Drizzle, TypeORM, Sequelize, Knex, Django ORM, Alembic, etc.) directly can cause irreversible data loss, schema corruption, or unintended migrations in production environments.
+
+```bash
+# BAD - Never run these directly
+npx prisma migrate dev
+npx prisma db push
+npx prisma db seed
+npx drizzle-kit push
+npx drizzle-kit migrate
+npx typeorm migration:run
+python manage.py migrate
+alembic upgrade head
+npx knex migrate:latest
+```
+
+**Why This is Wrong**:
+
+- Database migrations can be destructive and irreversible (dropping columns, tables, data)
+- ORM commands may connect to production databases if environment is misconfigured
+- Schema changes need human review before execution
+- Seed commands can overwrite existing data
+- The AI agent has no way to verify which database environment it's targeting
+
+**Fix**: Always present the command to the user and ask them to execute it manually.
+
+```markdown
+<!-- GOOD - Ask the user to run it -->
+"Please run the following command to apply the migration:"
+
+`npx prisma migrate dev --name add_users_table`
+
+"Review the generated migration SQL before confirming."
+```
+
+**Scope**: This applies to ALL ORM and database tools — Prisma, Drizzle, TypeORM, Sequelize, Knex, Django ORM, Alembic, SQLAlchemy, ActiveRecord, and any other database migration or seeding tool.
+
 <!-- auto-captured anti-patterns below this line -->

package/dist/cli/commands/heartbeat.js.map

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+{"version":3,"file":"heartbeat.js","sourceRoot":"","sources":["../../../src/cli/commands/heartbeat.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,UAAU,EAAE,YAAY,EAAiB,UAAU,EAAY,MAAM,SAAS,CAAC;AACxF,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,KAAK,EAAE,MAAM,oBAAoB,CAAC;AAC3C,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AACzC,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACpC,OAAO,KAAK,GAAG,MAAM,oBAAoB,CAAC;AAE1C,MAAM,UAAU,GAAG,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AAClD,MAAM,SAAS,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;AAEtC,SAAS,UAAU,CAAC,MAAc;IAChC,OAAO,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,gBAAgB,CAAC,CAAC;AAChD,CAAC;AAED,SAAS,aAAa;IACpB,OAAO,IAAI,CAAC,SAAS,EAAE,IAAI,EAAE,QAAQ,EAAE,qBAAqB,CAAC,CAAC;AAChE,CAAC;AAED,SAAS,gBAAgB,CAAC,GAAW;IACnC,IAAI,CAAC;QACH,OAAO,CAAC,IAAI,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC;QACrB,OAAO,IAAI,CAAC;IACd,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAED,SAAS,OAAO,CAAC,MAAc;IAC7B,MAAM,OAAO,GAAG,UAAU,CAAC,MAAM,CAAC,CAAC;IACnC,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC;QAAE,OAAO,IAAI,CAAC;IAEtC,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,YAAY,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC,IAAI,EAAE,CAAC;QACrD,MAAM,GAAG,GAAG,QAAQ,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;QACjC,IAAI,KAAK,CAAC,GAAG,CAAC;YAAE,OAAO,IAAI,CAAC;QAC5B,OAAO,GAAG,CAAC;IACb,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,SAAS,aAAa,CAAC,MAAc;IACnC,MAAM,OAAO,GAAG,UAAU,CAAC,MAAM,CAAC,CAAC;IACnC,IAAI,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;QACxB,IAAI,CAAC;YACH,UAAU,CAAC,OAAO,CAAC,CAAC;QACtB,CAAC;QAAC,MAAM,CAAC;YACP,SAAS;QACX,CAAC;IACH,CAAC;AACH,CAAC;AAED;;;GAGG;AACH,MAAM,CAAC,KAAK,UAAU,sBAAsB,CAAC,MAAc;IACzD,MAAM,aAAa,GAAG,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,cAAc,CAAC,CAAC;IAC3D,IAAI,CAAC,UAAU,CAAC,aAAa,CAAC;QAAE,OAAO;IAEvC,MAAM,WAAW,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;IACpC,IAAI,WAAW,IAAI,gBAAgB,CAAC,WAAW,CAAC,EAAE,CAAC;QACjD,GAAG,CAAC,IAAI,CAAC,0CAA0C,WAAW,GAAG,CAAC,CAAC;QACnE,OAAO;IACT,CAAC;IAED,IAAI,WAAW;QAAE,aAAa,CAAC,MAAM,CAAC,CAAC;IAEvC,MAAM,UAAU,GAAG,aAAa,EAAE,CAAC;IACnC,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAC,QAAQ,EAAE,CAAC,UAAU,EAAE,MAAM,CAAC,EAAE;QAC1D,QAAQ,EAAE,IAAI;QACd,KAAK,EAAE,QAAQ;KAChB,CAAC,CAAC;IACH,KAAK,CAAC,KAAK,EAAE,CAAC;IAEd,MAAM,IAAI,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,CAAC,OAAO,EAAE,GAAG,CAAC,CAAC,CAAC;IAEzD,MAAM,GAAG,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;IAC5B,IAAI,GAAG,EAAE,CAAC;QACR,GAAG,CAAC,OAAO,CAAC,gDAAgD,GAAG,GAAG,CAAC,CAAC;IACtE,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,YAAY,CAChC,MAAc,EACd,OAA2B;IAE3B,MAAM,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAC9B,MAAM,aAAa,GAAG,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,cAAc,CAAC,CAAC;IAE3D,QAAQ,MAAM,EAAE,CAAC;QACf,KAAK,OAAO,CAAC,CAAC,CAAC;YACb,2BAA2B;YAC3B,MAAM,WAAW,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;YACpC,IAAI,WAAW,IAAI,gBAAgB,CAAC,WAAW,CAAC,EAAE,CAAC;gBACjD,GAAG,CAAC,IAAI,CAAC,6CAA6C,WAAW,GAAG,CAAC,CAAC;gBACtE,OAAO;YACT,CAAC;YAED,4BAA4B;YAC5B,IAAI,WAAW,EAAE,CAAC;gBAChB,aAAa,CAAC,MAAM,CAAC,CAAC;YACxB,CAAC;YAED,4BAA4B;YAC5B,IAAI,CAAC,UAAU,CAAC,aAAa,CAAC,EAAE,CAAC;gBAC/B,GAAG,CAAC,IAAI,CAAC,kEAAkE,CAAC,CAAC;gBAC7E,OAAO;YACT,CAAC;YAED,wBAAwB;YACxB,MAAM,UAAU,GAAG,aAAa,EAAE,CAAC;YACnC,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAC,QAAQ,EAAE,CAAC,UAAU,EAAE,MAAM,CAAC,EAAE;gBAC1D,QAAQ,EAAE,IAAI;gBACd,KAAK,EAAE,QAAQ;aAChB,CAAC,CAAC;YAEH,KAAK,CAAC,KAAK,EAAE,CAAC;YAEd,wCAAwC;YACxC,MAAM,IAAI,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,CAAC,OAAO,EAAE,GAAG,CAAC,CAAC,CAAC;YAEzD,MAAM,GAAG,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;YAC5B,IAAI,GAAG,EAAE,CAAC;gBACR,GAAG,CAAC,OAAO,CAAC,kCAAkC,GAAG,GAAG,CAAC,CAAC;YACxD,CAAC;iBAAM,CAAC;gBACN,GAAG,CAAC,IAAI,CAAC,6DAA6D,CAAC,CAAC;YAC1E,CAAC;YACD,MAAM;QACR,CAAC;QAED,KAAK,MAAM,CAAC,CAAC,CAAC;YACZ,MAAM,GAAG,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;YAC5B,IAAI,CAAC,GAAG,EAAE,CAAC;gBACT,GAAG,CAAC,IAAI,CAAC,iCAAiC,CAAC,CAAC;gBAC5C,OAAO;YACT,CAAC;YAED,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,EAAE,CAAC;gBAC3B,aAAa,CAAC,MAAM,CAAC,CAAC;gBACtB,GAAG,CAAC,IAAI,CAAC,sDAAsD,CAAC,CAAC;gBACjE,OAAO;YACT,CAAC;YAED,IAAI,CAAC;gBACH,OAAO,CAAC,IAAI,CAAC,GAAG,EAAE,SAAS,CAAC,CAAC;gBAC7B,GAAG,CAAC,OAAO,CAAC,kCAAkC,GAAG,GAAG,CAAC,CAAC;YACxD,CAAC;YAAC,OAAO,GAAG,EAAE,CAAC;gBACb,GAAG,CAAC,IAAI,CAAC,0BAA2B,GAAa,CAAC,OAAO,EAAE,CAAC,CAAC;YAC/D,CAAC;YAED,2DAA2D;YAC3D,aAAa,CAAC,MAAM,CAAC,CAAC;YACtB,MAAM;QACR,CAAC;QAED,KAAK,QAAQ,CAAC,CAAC,CAAC;YACd,MAAM,GAAG,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;YAE5B,IAAI,CAAC,GAAG,EAAE,CAAC;gBACT,GAAG,CAAC,IAAI,CAAC,2BAA2B,CAAC,CAAC;gBACtC,OAAO;YACT,CAAC;YAED,IAAI,gBAAgB,CAAC,GAAG,CAAC,EAAE,CAAC;gBAC1B,GAAG,CAAC,IAAI,CAAC,mCAAmC,GAAG,GAAG,CAAC,CAAC;gBAEpD,4BAA4B;gBAC5B,MAAM,OAAO,GAAG,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,gBAAgB,CAAC,CAAC;gBACvD,IAAI,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;oBACxB,MAAM,UAAU,GAAG,YAAY,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;oBAClD,MAAM,KAAK,GAAG,UAAU,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;oBAC5C,MAAM,MAAM,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;oBAC/B,OAAO,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC;oBAC7B,KAAK,MAAM,IAAI,IAAI,MAAM,EAAE,CAAC;wBAC1B,OAAO,CAAC,GAAG,CAAC,KAAK,IAAI,EAAE,CAAC,CAAC;oBAC3B,CAAC;gBACH,CAAC;YACH,CAAC;iBAAM,CAAC;gBACN,aAAa,CAAC,MAAM,CAAC,CAAC;gBACtB,GAAG,CAAC,IAAI,CAAC,+CAA+C,CAAC,CAAC;YAC5D,CAAC;YACD,MAAM;QACR,CAAC;QAED;YACE,GAAG,CAAC,IAAI,CAAC,mBA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package/dist/cli/daemon/heartbeat-daemon.js

@@ -90,7 +90,20 @@ function executeTask(task) {
     // The daemon runs detached — it's not actually nested.
     const cleanEnv = { ...process.env };
     delete cleanEnv['CLAUDECODE'];
-    const child = spawn('claude', ['-p', '--dangerously-skip-permissions', task.command], {
+    const args = [
+        '-p',
+        '--dangerously-skip-permissions',
+        '--append-system-prompt',
+        'You are running autonomously via the heartbeat daemon. There is NO human to ask for permission — you MUST act directly. Use Edit/Write/Bash tools without hesitation. Never say "Could you grant permission" or "I need write access" — you already have full permissions via --dangerously-skip-permissions. If a tool call fails, retry or find an alternative. Complete the task fully.',
+    ];
+    // Add extra directories if specified
+    if (task.addDirs?.length) {
+        for (const dir of task.addDirs) {
+            args.push('--add-dir', dir);
+        }
+    }
+    args.push(task.command);
+    const child = spawn('claude', args, {
         stdio: ['ignore', 'pipe', 'pipe'],
         cwd: target,
         env: cleanEnv,
@@ -237,4 +250,21 @@ try {
 catch {
     log('Warning: could not watch heartbeat.md for changes');
 }
+// Keepalive: refresh PID file every 5 minutes so stale detection works
+const KEEPALIVE_MS = 5 * 60 * 1000;
+setInterval(() => {
+    try {
+        writeFileSync(pidPath, String(process.pid), 'utf-8');
+    }
+    catch {
+        // ignore
+    }
+}, KEEPALIVE_MS);
+// Handle uncaught errors gracefully — log and continue
+process.on('uncaughtException', (err) => {
+    log(`Uncaught exception: ${err.message}`);
+});
+process.on('unhandledRejection', (reason) => {
+    log(`Unhandled rejection: ${String(reason)}`);
+});
 //# sourceMappingURL=heartbeat-daemon.js.map

package/dist/cli/daemon/heartbeat-daemon.js.map

@@ -1 +1 @@
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package/dist/cli/daemon/heartbeat-parser.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"heartbeat-parser.d.ts","sourceRoot":"","sources":["../../../src/cli/daemon/heartbeat-parser.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,aAAa,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAYjE;;;;;;;;;;GAUG;AACH,wBAAgB,aAAa,CAAC,QAAQ,EAAE,MAAM,GAAG,cAAc,GAAG,IAAI,CAkErE;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,GAAG,aAAa,EAAE,CAoEnE"}
+{"version":3,"file":"heartbeat-parser.d.ts","sourceRoot":"","sources":["../../../src/cli/daemon/heartbeat-parser.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,aAAa,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAYjE;;;;;;;;;;GAUG;AACH,wBAAgB,aAAa,CAAC,QAAQ,EAAE,MAAM,GAAG,cAAc,GAAG,IAAI,CAkErE;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,GAAG,aAAa,EAAE,CA0EnE"}

package/dist/cli/daemon/heartbeat-parser.js

@@ -133,6 +133,11 @@ export function parseHeartbeatFile(content) {
             currentTask.tasklistLink = tasklistLinkMatch[1].trim();
             continue;
         }
+        const addDirsMatch = trimmed.match(/^\-\s+\*\*Add Dirs\*\*:\s*(.+)$/);
+        if (addDirsMatch) {
+            currentTask.addDirs = addDirsMatch[1].trim().split(/[,\s]+/).filter(Boolean);
+            continue;
+        }
     }
     // Save the last task
     if (currentTask?.name) {
@@ -157,6 +162,7 @@ function finalizeTask(partial) {
         description: partial.description ?? '',
         oneShot: partial.oneShot,
         tasklistLink: partial.tasklistLink,
+        addDirs: partial.addDirs,
     };
 }
 //# sourceMappingURL=heartbeat-parser.js.map

package/dist/cli/daemon/heartbeat-parser.js.map

@@ -1 +1 @@
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package/dist/cli/types.d.ts

@@ -40,6 +40,7 @@ export interface HeartbeatTask {
     description: string;
     oneShot?: boolean;
     tasklistLink?: string;
+    addDirs?: string[];
 }
 export interface HeartbeatOptions {
     target: string;

package/dist/cli/types.d.ts.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "planflow-ai",
-  "version": "1.3.2",
+  "version": "1.3.5",
   "description": "Structured AI-assisted development workflows for discovery, planning, execution, code reviews, and testing",
   "type": "module",
   "main": "dist/cli/index.js",

package/templates/shared/CLAUDE.md.template

@@ -32,6 +32,7 @@
 - **Project Brain**: If `flow/brain/index.md` exists, read it silently and internalize active features and recent errors. See `.claude/resources/core/brain-capture.md` for full rules.
 - **Project Tasklist**: If `flow/tasklist.md` exists, read it silently and present a brief summary of active tasks. See `.claude/resources/core/project-tasklist.md` for full rules.
 - **Project Memory**: If `flow/memory.md` exists, read it silently and internalize the last 7 days of completed work. See `.claude/resources/core/project-memory.md` for full rules.
+- **Session Scratchpad**: If `flow/.scratchpad.md` exists and has content, read it silently. Promote stale entries to ledger/brain, then clear. During work, write noteworthy observations to the scratchpad. See `.claude/resources/core/session-scratchpad.md` for full rules.
 - **Autopilot Mode**: If `flow/.flowconfig` has `autopilot: true` (or `flow/.autopilot` exists for backward compat), read `.claude/resources/core/autopilot-mode.md` and follow its workflow for every user input.
 
 ## Critical Rules
@@ -64,6 +65,7 @@ flow/
 ├── heartbeat.md       # Scheduled task definitions for the heartbeat daemon
 ├── log.md             # Heartbeat log of important events
 ├── ledger.md          # Persistent project learning journal
+├── .scratchpad.md     # Ephemeral per-session notes (cleared each session)
 ├── .flowconfig        # Central config file (autopilot, git control, settings)
 └── .gitcontrol        # Git control settings — backward compat (prefer .flowconfig)
 ```
@@ -84,6 +86,14 @@ Discovery asks whether features involve UI work. If confirmed, captures structur
 
 During skill execution, the LLM silently buffers patterns and anti-patterns, presenting them for approval at the end. Approved patterns are written to `.claude/rules/core/allowed-patterns.md` or `forbidden-patterns.md`. See `.claude/resources/core/pattern-capture.md`.
 
+## Phase Isolation
+
+When `phase_isolation: true` in `flow/.flowconfig` (default), each `/execute-plan` phase runs in an isolated Agent sub-agent with a clean context window. Sub-agent receives focused context (phase spec, file list, patterns) and returns structured JSON summary. Eliminates context rot. Disable with `/flow phase_isolation=false`. See `.claude/resources/core/phase-isolation.md`.
+
+## Discovery Sub-Agents
+
+During `/discovery-plan`, three parallel haiku sub-agents explore the codebase (similar features, API/data patterns, schema/types). Returns condensed JSON findings merged into a Codebase Analysis section. Always-on. See `.claude/resources/core/discovery-sub-agents.md`.
+
 ## Complexity Scoring
 
 Every plan phase has a complexity score (0-10):