phenoml 9.2.0 → 10.0.0

package/dist/cjs/api/resources/construe/errors/InternalServerError.js

@@ -44,7 +44,11 @@ class InternalServerError extends errors.phenomlError {
             body: body,
             rawResponse: rawResponse,
         });
-        Object.setPrototypeOf(this, InternalServerError.prototype);
+        Object.setPrototypeOf(this, new.target.prototype);
+        if (Error.captureStackTrace) {
+            Error.captureStackTrace(this, this.constructor);
+        }
+        this.name = this.constructor.name;
     }
 }
 exports.InternalServerError = InternalServerError;

package/dist/cjs/api/resources/construe/errors/NotFoundError.js

@@ -44,7 +44,11 @@ class NotFoundError extends errors.phenomlError {
             body: body,
             rawResponse: rawResponse,
         });
-        Object.setPrototypeOf(this, NotFoundError.prototype);
+        Object.setPrototypeOf(this, new.target.prototype);
+        if (Error.captureStackTrace) {
+            Error.captureStackTrace(this, this.constructor);
+        }
+        this.name = this.constructor.name;
     }
 }
 exports.NotFoundError = NotFoundError;

package/dist/cjs/api/resources/construe/errors/NotImplementedError.js

@@ -44,7 +44,11 @@ class NotImplementedError extends errors.phenomlError {
             body: body,
             rawResponse: rawResponse,
         });
-        Object.setPrototypeOf(this, NotImplementedError.prototype);
+        Object.setPrototypeOf(this, new.target.prototype);
+        if (Error.captureStackTrace) {
+            Error.captureStackTrace(this, this.constructor);
+        }
+        this.name = this.constructor.name;
     }
 }
 exports.NotImplementedError = NotImplementedError;

package/dist/cjs/api/resources/construe/errors/ServiceUnavailableError.js

@@ -44,7 +44,11 @@ class ServiceUnavailableError extends errors.phenomlError {
             body: body,
             rawResponse: rawResponse,
         });
-        Object.setPrototypeOf(this, ServiceUnavailableError.prototype);
+        Object.setPrototypeOf(this, new.target.prototype);
+        if (Error.captureStackTrace) {
+            Error.captureStackTrace(this, this.constructor);
+        }
+        this.name = this.constructor.name;
     }
 }
 exports.ServiceUnavailableError = ServiceUnavailableError;

package/dist/cjs/api/resources/construe/errors/UnauthorizedError.js

@@ -44,7 +44,11 @@ class UnauthorizedError extends errors.phenomlError {
             body: body,
             rawResponse: rawResponse,
         });
-        Object.setPrototypeOf(this, UnauthorizedError.prototype);
+        Object.setPrototypeOf(this, new.target.prototype);
+        if (Error.captureStackTrace) {
+            Error.captureStackTrace(this, this.constructor);
+        }
+        this.name = this.constructor.name;
     }
 }
 exports.UnauthorizedError = UnauthorizedError;

package/dist/cjs/api/resources/construe/exports.d.ts

@@ -0,0 +1,2 @@
+export { ConstrueClient } from "./client/Client.js";
+export * from "./client/index.js";

package/dist/cjs/api/resources/construe/exports.js

@@ -0,0 +1,21 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ConstrueClient = void 0;
+var Client_js_1 = require("./client/Client.js");
+Object.defineProperty(exports, "ConstrueClient", { enumerable: true, get: function () { return Client_js_1.ConstrueClient; } });
+__exportStar(require("./client/index.js"), exports);

package/dist/cjs/api/resources/construe/types/CodeResponse.d.ts

@@ -4,5 +4,5 @@ export interface CodeResponse {
     /** Short description of the code */
     description: string;
     /** Extended definition of the code (if available) */
-    definition?: string;
+    definition?: string | undefined;
 }

package/dist/cjs/api/resources/construe/types/ConstrueUploadCodeSystemResponse.d.ts

@@ -1,5 +1,5 @@
 export interface ConstrueUploadCodeSystemResponse {
-    status?: string;
-    name?: string;
-    version?: string;
+    status?: string | undefined;
+    name?: string | undefined;
+    version?: string | undefined;
 }

package/dist/cjs/api/resources/construe/types/ExtractRequestConfig.d.ts

@@ -1,28 +1,28 @@
 export interface ExtractRequestConfig {
     /** Method for splitting input text into chunks before code extraction */
-    chunking_method?: ExtractRequestConfig.ChunkingMethod;
+    chunking_method?: ExtractRequestConfig.ChunkingMethod | undefined;
     /**
      * Maximum number of codes to extract per chunk. If not specified, uses system-specific defaults:
      * * SNOMED: 10
      * * LOINC, HPO, RXNORM: 20
      * * All other systems: 5
      */
-    max_codes_per_chunk?: number;
+    max_codes_per_chunk?: number | undefined;
     /** Threshold for filtering similar codes (0.0-1.0) */
-    code_similarity_filter?: number;
+    code_similarity_filter?: number | undefined;
     /**
      * Method for validating extracted codes:
      * * none - No validation, returns all candidate codes
      * * simple - LLM-based validation
      * * medication_search - LLM-based validation tailored for medication concepts
      */
-    validation_method?: ExtractRequestConfig.ValidationMethod;
+    validation_method?: ExtractRequestConfig.ValidationMethod | undefined;
     /** Whether to include explanations for why each code was extracted */
-    include_rationale?: boolean;
+    include_rationale?: boolean | undefined;
     /** Whether to include ancestor/parent codes in the results */
-    include_ancestors?: boolean;
+    include_ancestors?: boolean | undefined;
     /** Whether to include codes that failed validation in the results */
-    include_invalid?: boolean;
+    include_invalid?: boolean | undefined;
     /**
      * Whether to include source text citations for each extracted code.
      * Citations show the exact text spans (with character offsets) that led to each code.
@@ -30,7 +30,7 @@ export interface ExtractRequestConfig {
      * The "none" method returns full text as one chunk (not useful for citations).
      * LLM-based chunking (paragraphs, topics) does not support citations.
      */
-    include_citations?: boolean;
+    include_citations?: boolean | undefined;
 }
 export declare namespace ExtractRequestConfig {
     /** Method for splitting input text into chunks before code extraction */

package/dist/cjs/api/resources/construe/types/ExtractRequestSystem.d.ts

@@ -16,7 +16,7 @@ export interface ExtractRequestSystem {
      *
      * Usage of CPT is subject to AMA requirements: see PhenoML Terms of Service.
      */
-    name?: string;
+    name?: string | undefined;
     /** Code system version. Must match the version available in your environment. */
-    version?: string;
+    version?: string | undefined;
 }

package/dist/cjs/api/resources/construe/types/ExtractedCodeResult.d.ts

@@ -7,16 +7,16 @@ export interface ExtractedCodeResult {
     /** Whether the code passed validation. Always true unless include_invalid is set to true, in which case invalid codes will have this set to false. */
     valid: boolean;
     /** Explanation for why this code was extracted (if include_rationale is true) */
-    reason?: string;
+    reason?: string | undefined;
     /**
      * Whether this code is an ancestor (parent) of an extracted code rather than directly extracted.
      * Only present when include_ancestors is true.
      */
-    is_ancestor?: boolean;
+    is_ancestor?: boolean | undefined;
     /**
      * Source text references showing where this code was found in the input.
      * Only present when include_citations is true and chunking method supports it.
      * Ancestor codes do not receive citations.
      */
-    citations?: phenoml.construe.Citation[];
+    citations?: phenoml.construe.Citation[] | undefined;
 }

package/dist/cjs/api/resources/construe/types/GetCodeResponse.d.ts

@@ -6,5 +6,5 @@ export interface GetCodeResponse {
     /** Short description of the code */
     description: string;
     /** Extended definition of the code (if available) */
-    definition?: string;
+    definition?: string | undefined;
 }

package/dist/cjs/api/resources/construe/types/ListCodesResponse.d.ts

@@ -3,7 +3,7 @@ export interface ListCodesResponse {
     system: phenoml.construe.CodeSystemInfo;
     codes: phenoml.construe.CodeResponse[];
     /** Cursor for fetching the next page (null if no more results) */
-    next_cursor?: string;
+    next_cursor?: string | undefined;
     /** Whether there are more results available */
     has_more: boolean;
 }

package/dist/cjs/api/resources/fhir/client/Client.d.ts

@@ -1,15 +1,15 @@
 import type { BaseClientOptions, BaseRequestOptions } from "../../../../BaseClient.js";
+import { type NormalizedClientOptionsWithAuth } from "../../../../BaseClient.js";
 import * as core from "../../../../core/index.js";
 import * as phenoml from "../../../index.js";
-export declare namespace Fhir {
-    interface Options extends BaseClientOptions {
-    }
+export declare namespace FhirClient {
+    type Options = BaseClientOptions;
     interface RequestOptions extends BaseRequestOptions {
     }
 }
-export declare class Fhir {
-    protected readonly _options: Fhir.Options;
-    constructor(_options: Fhir.Options);
+export declare class FhirClient {
+    protected readonly _options: NormalizedClientOptionsWithAuth<FhirClient.Options>;
+    constructor(options?: FhirClient.Options);
     /**
      * Retrieves FHIR resources from the specified provider. Supports both individual resource retrieval and search operations based on the FHIR path and query parameters.
      *
@@ -24,7 +24,7 @@ export declare class Fhir {
      *                             - "Patient/123" (for specific resource operations)
      *                             - "Patient/123/_history" (for history operations)
      * @param {phenoml.fhir.FhirSearchRequest} request
-     * @param {Fhir.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {FhirClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.fhir.BadRequestError}
      * @throws {@link phenoml.fhir.UnauthorizedError}
@@ -38,7 +38,7 @@ export declare class Fhir {
      *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c..."
      *     })
      */
-    search(fhir_provider_id: string, fhir_path: string, request?: phenoml.fhir.FhirSearchRequest, requestOptions?: Fhir.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirSearchResponse>;
+    search(fhir_provider_id: string, fhir_path: string, request?: phenoml.fhir.FhirSearchRequest, requestOptions?: FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirSearchResponse>;
     private __search;
     /**
      * Creates a new FHIR resource on the specified provider. The request body should contain a valid FHIR resource in JSON format.
@@ -54,7 +54,7 @@ export declare class Fhir {
      *                             - "Patient/123" (for specific resource operations)
      *                             - "Patient/123/_history" (for history operations)
      * @param {phenoml.fhir.FhirCreateRequest} request
-     * @param {Fhir.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {FhirClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.fhir.BadRequestError}
      * @throws {@link phenoml.fhir.UnauthorizedError}
@@ -80,7 +80,7 @@ export declare class Fhir {
      *         }
      *     })
      */
-    create(fhir_provider_id: string, fhir_path: string, request: phenoml.fhir.FhirCreateRequest, requestOptions?: Fhir.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirResource>;
+    create(fhir_provider_id: string, fhir_path: string, request: phenoml.fhir.FhirCreateRequest, requestOptions?: FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirResource>;
     private __create;
     /**
      * Creates or updates a FHIR resource on the specified provider. If the resource exists, it will be updated; otherwise, it will be created.
@@ -96,7 +96,7 @@ export declare class Fhir {
      *                             - "Patient/123" (for specific resource operations)
      *                             - "Patient/123/_history" (for history operations)
      * @param {phenoml.fhir.FhirUpsertRequest} request
-     * @param {Fhir.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {FhirClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.fhir.BadRequestError}
      * @throws {@link phenoml.fhir.UnauthorizedError}
@@ -124,7 +124,7 @@ export declare class Fhir {
      *         }
      *     })
      */
-    upsert(fhir_provider_id: string, fhir_path: string, request: phenoml.fhir.FhirUpsertRequest, requestOptions?: Fhir.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirResource>;
+    upsert(fhir_provider_id: string, fhir_path: string, request: phenoml.fhir.FhirUpsertRequest, requestOptions?: FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirResource>;
     private __upsert;
     /**
      * Deletes a FHIR resource from the specified provider.
@@ -140,7 +140,7 @@ export declare class Fhir {
      *                             - "Patient/123" (for specific resource operations)
      *                             - "Patient/123/_history" (for history operations)
      * @param {phenoml.fhir.FhirDeleteRequest} request
-     * @param {Fhir.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {FhirClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.fhir.BadRequestError}
      * @throws {@link phenoml.fhir.UnauthorizedError}
@@ -154,7 +154,7 @@ export declare class Fhir {
      *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c..."
      *     })
      */
-    delete(fhir_provider_id: string, fhir_path: string, request?: phenoml.fhir.FhirDeleteRequest, requestOptions?: Fhir.RequestOptions): core.HttpResponsePromise<Record<string, unknown>>;
+    delete(fhir_provider_id: string, fhir_path: string, request?: phenoml.fhir.FhirDeleteRequest, requestOptions?: FhirClient.RequestOptions): core.HttpResponsePromise<Record<string, unknown>>;
     private __delete;
     /**
      * Partially updates a FHIR resource on the specified provider using JSON Patch operations as defined in RFC 6902.
@@ -175,7 +175,7 @@ export declare class Fhir {
      *                             - "Patient/123" (for specific resource operations)
      *                             - "Patient/123/_history" (for history operations)
      * @param {phenoml.fhir.FhirPatchRequest} request
-     * @param {Fhir.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {FhirClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.fhir.BadRequestError}
      * @throws {@link phenoml.fhir.UnauthorizedError}
@@ -245,7 +245,7 @@ export declare class Fhir {
      *             }]
      *     })
      */
-    patch(fhir_provider_id: string, fhir_path: string, request: phenoml.fhir.FhirPatchRequest, requestOptions?: Fhir.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirResource>;
+    patch(fhir_provider_id: string, fhir_path: string, request: phenoml.fhir.FhirPatchRequest, requestOptions?: FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirResource>;
     private __patch;
     /**
      * Executes a FHIR Bundle transaction or batch operation on the specified provider. This allows multiple FHIR resources to be processed in a single request.
@@ -258,7 +258,7 @@ export declare class Fhir {
      *                                    - A UUID representing the provider ID
      *                                    - A provider name (legacy support - will just use the most recently updated provider with this name)
      * @param {phenoml.fhir.FhirExecuteBundleRequest} request
-     * @param {Fhir.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {FhirClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.fhir.BadRequestError}
      * @throws {@link phenoml.fhir.UnauthorizedError}
@@ -303,7 +303,6 @@ export declare class Fhir {
      *         }
      *     })
      */
-    executeBundle(fhir_provider_id: string, request: phenoml.fhir.FhirExecuteBundleRequest, requestOptions?: Fhir.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirBundle>;
+    executeBundle(fhir_provider_id: string, request: phenoml.fhir.FhirExecuteBundleRequest, requestOptions?: FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.fhir.FhirBundle>;
     private __executeBundle;
-    protected _getAuthorizationHeader(): Promise<string>;
 }