molstar 3.6.0 → 3.8.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +202 -202
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +106 -106
- package/build/viewer/molstar.css +1 -1
- package/build/viewer/molstar.js +1 -1
- package/build/viewer/molstar.js.LICENSE.txt +0 -15
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.html +106 -106
- package/lib/cli/chem-comp-dict/create-ions.d.ts +2 -1
- package/lib/cli/chem-comp-dict/create-ions.js +3 -2
- package/lib/cli/cifschema/index.js +1 -1
- package/lib/cli/cifschema/util/cif-dic.js +1 -0
- package/lib/commonjs/cli/chem-comp-dict/create-ions.d.ts +2 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +3 -2
- package/lib/commonjs/cli/cifschema/index.js +1 -1
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
- package/lib/commonjs/examples/alpha-orbitals/index.js +20 -15
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +20 -5
- package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/anvil/representation.d.ts +4 -4
- package/lib/commonjs/extensions/cellpack/representation.d.ts +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
- package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +284 -0
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -5
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +0 -2
- package/lib/commonjs/mol-canvas3d/passes/draw.js +35 -70
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/passes/pick.js +1 -1
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +16 -11
- package/lib/commonjs/mol-geo/geometry/color-data.d.ts +7 -10
- package/lib/commonjs/mol-geo/geometry/color-data.js +7 -4
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -2
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -2
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -2
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +15 -4
- package/lib/commonjs/mol-geo/geometry/transparency-data.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/transparency-data.js +3 -1
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +2 -1
- package/lib/commonjs/mol-gl/renderable/cylinders.js +2 -2
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +2 -1
- package/lib/commonjs/mol-gl/renderable/mesh.js +2 -2
- package/lib/commonjs/mol-gl/renderable/schema.d.ts +2 -2
- package/lib/commonjs/mol-gl/renderable/schema.js +2 -2
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +2 -1
- package/lib/commonjs/mol-gl/renderable/spheres.js +2 -2
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +2 -1
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +2 -2
- package/lib/commonjs/mol-gl/renderer.d.ts +5 -5
- package/lib/commonjs/mol-gl/renderer.js +114 -64
- package/lib/commonjs/mol-gl/scene.d.ts +1 -0
- package/lib/commonjs/mol-gl/scene.js +26 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/outlines.frag.d.ts +3 -2
- package/lib/commonjs/mol-gl/shader/outlines.frag.js +3 -2
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/ssao.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/ssao.frag.js +2 -2
- package/lib/commonjs/mol-gl/webgl/render-target.d.ts +3 -1
- package/lib/commonjs/mol-gl/webgl/render-target.js +3 -1
- package/lib/commonjs/mol-gl/webgl/renderbuffer.d.ts +2 -1
- package/lib/commonjs/mol-gl/webgl/renderbuffer.js +8 -1
- package/lib/commonjs/mol-gl/webgl/state.d.ts +7 -1
- package/lib/commonjs/mol-gl/webgl/state.js +28 -1
- package/lib/commonjs/mol-gl/webgl/texture.js +3 -0
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/cif-core.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +3 -4
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +2 -3
- package/lib/commonjs/mol-io/reader/dx/parser.js +1 -1
- package/lib/commonjs/mol-io/writer/ligand-encoder.d.ts +4 -2
- package/lib/commonjs/mol-io/writer/ligand-encoder.js +9 -4
- package/lib/commonjs/mol-io/writer/mol/encoder.js +16 -4
- package/lib/commonjs/mol-io/writer/mol2/encoder.js +17 -4
- package/lib/commonjs/mol-math/geometry/lookup3d/grid.d.ts +1 -1
- package/lib/commonjs/mol-math/geometry/lookup3d/grid.js +3 -3
- package/lib/commonjs/mol-model/structure/model/properties/seconday-structure.d.ts +4 -2
- package/lib/commonjs/mol-model/structure/model/properties/seconday-structure.js +2 -1
- package/lib/commonjs/mol-model/structure/model/types/ions.d.ts +2 -2
- package/lib/commonjs/mol-model/structure/model/types/ions.js +2 -2
- package/lib/commonjs/mol-model/structure/model/types/saccharides.js +1 -1
- package/lib/commonjs/mol-model/structure/model/types.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/model/types.js +43 -41
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +2 -2
- package/lib/commonjs/mol-model-formats/structure/common/property.js +2 -0
- package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.d.ts +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.js +2 -2
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -3
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
- package/lib/commonjs/mol-plugin/commands.d.ts +1 -1
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +3 -3
- package/lib/commonjs/mol-plugin-state/helpers/root-structure.js +3 -1
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +6 -6
- package/lib/commonjs/mol-plugin-ui/base.d.ts +3 -1
- package/lib/commonjs/mol-plugin-ui/controls/color.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/controls/common.d.ts +2 -0
- package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.js +21 -7
- package/lib/commonjs/mol-plugin-ui/plugin.d.ts +2 -0
- package/lib/commonjs/mol-plugin-ui/plugin.js +2 -2
- package/lib/commonjs/mol-plugin-ui/spec.d.ts +1 -0
- package/lib/commonjs/mol-plugin-ui/state/common.js +6 -7
- package/lib/commonjs/mol-plugin-ui/task.d.ts +2 -21
- package/lib/commonjs/mol-plugin-ui/task.js +39 -43
- package/lib/commonjs/mol-plugin-ui/viewport/help.d.ts +4 -1
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/params.d.ts +4 -4
- package/lib/commonjs/mol-repr/structure/registry.d.ts +10 -10
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +4 -4
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -4
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/util.d.ts +1 -1
- package/lib/commonjs/mol-repr/util.js +1 -1
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +5 -5
- package/lib/commonjs/mol-repr/volume/registry.d.ts +1 -1
- package/lib/commonjs/mol-repr/volume/slice.js +1 -1
- package/lib/commonjs/mol-script/language/builder.d.ts +0 -1
- package/lib/commonjs/mol-theme/color/volume-value.d.ts +3 -2
- package/lib/commonjs/mol-theme/color/volume-value.js +1 -3
- package/lib/commonjs/mol-theme/color.d.ts +55 -39
- package/lib/commonjs/mol-theme/color.js +1 -1
- package/lib/commonjs/mol-theme/theme.d.ts +8 -7
- package/lib/commonjs/mol-theme/theme.js +1 -1
- package/lib/commonjs/servers/model/server/query.js +1 -3
- package/lib/commonjs/servers/model/version.d.ts +1 -1
- package/lib/commonjs/servers/model/version.js +1 -1
- package/lib/examples/alpha-orbitals/index.html +61 -61
- package/lib/examples/alpha-orbitals/index.js +20 -15
- package/lib/examples/basic-wrapper/index.html +137 -137
- package/lib/examples/lighting/index.html +88 -88
- package/lib/examples/proteopedia-wrapper/coloring.d.ts +20 -5
- package/lib/examples/proteopedia-wrapper/index.html +236 -236
- package/lib/extensions/anvil/behavior.d.ts +1 -1
- package/lib/extensions/anvil/representation.d.ts +4 -4
- package/lib/extensions/cellpack/representation.d.ts +1 -1
- package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
- package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -1
- package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
- package/lib/extensions/rcsb/graphql/types.d.ts +284 -0
- package/lib/extensions/rcsb/validation-report/representation.d.ts +5 -5
- package/lib/mol-canvas3d/canvas3d.d.ts +2 -2
- package/lib/mol-canvas3d/helper/camera-helper.d.ts +1 -1
- package/lib/mol-canvas3d/helper/handle-helper.d.ts +1 -1
- package/lib/mol-canvas3d/helper/helper.d.ts +2 -2
- package/lib/mol-canvas3d/passes/draw.d.ts +0 -2
- package/lib/mol-canvas3d/passes/draw.js +32 -67
- package/lib/mol-canvas3d/passes/image.d.ts +1 -1
- package/lib/mol-canvas3d/passes/pick.d.ts +1 -1
- package/lib/mol-canvas3d/passes/pick.js +1 -1
- package/lib/mol-canvas3d/passes/postprocessing.d.ts +1 -0
- package/lib/mol-canvas3d/passes/postprocessing.js +16 -11
- package/lib/mol-geo/geometry/color-data.d.ts +7 -10
- package/lib/mol-geo/geometry/color-data.js +7 -4
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +2 -2
- package/lib/mol-geo/geometry/cylinders/cylinders.js +3 -2
- package/lib/mol-geo/geometry/lines/lines.d.ts +1 -0
- package/lib/mol-geo/geometry/mesh/mesh.d.ts +1 -1
- package/lib/mol-geo/geometry/mesh/mesh.js +3 -2
- package/lib/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/mol-geo/geometry/spheres/spheres.d.ts +1 -1
- package/lib/mol-geo/geometry/spheres/spheres.js +3 -2
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +15 -4
- package/lib/mol-geo/geometry/transparency-data.d.ts +1 -1
- package/lib/mol-geo/geometry/transparency-data.js +3 -1
- package/lib/mol-gl/renderable/cylinders.d.ts +2 -1
- package/lib/mol-gl/renderable/cylinders.js +2 -2
- package/lib/mol-gl/renderable/mesh.d.ts +2 -1
- package/lib/mol-gl/renderable/mesh.js +2 -2
- package/lib/mol-gl/renderable/schema.d.ts +2 -2
- package/lib/mol-gl/renderable/schema.js +2 -2
- package/lib/mol-gl/renderable/spheres.d.ts +2 -1
- package/lib/mol-gl/renderable/spheres.js +2 -2
- package/lib/mol-gl/renderable/texture-mesh.d.ts +2 -1
- package/lib/mol-gl/renderable/texture-mesh.js +2 -2
- package/lib/mol-gl/renderer.d.ts +5 -5
- package/lib/mol-gl/renderer.js +114 -64
- package/lib/mol-gl/scene.d.ts +1 -0
- package/lib/mol-gl/scene.js +26 -1
- package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
- package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/mol-gl/shader/image.frag.js +1 -1
- package/lib/mol-gl/shader/outlines.frag.d.ts +3 -2
- package/lib/mol-gl/shader/outlines.frag.js +3 -2
- package/lib/mol-gl/shader/postprocessing.frag.d.ts +1 -1
- package/lib/mol-gl/shader/postprocessing.frag.js +1 -1
- package/lib/mol-gl/shader/ssao.frag.d.ts +2 -2
- package/lib/mol-gl/shader/ssao.frag.js +2 -2
- package/lib/mol-gl/webgl/render-target.d.ts +3 -1
- package/lib/mol-gl/webgl/render-target.js +3 -1
- package/lib/mol-gl/webgl/renderbuffer.d.ts +2 -1
- package/lib/mol-gl/webgl/renderbuffer.js +8 -1
- package/lib/mol-gl/webgl/state.d.ts +7 -1
- package/lib/mol-gl/webgl/state.js +28 -1
- package/lib/mol-gl/webgl/texture.js +3 -0
- package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/mol-io/reader/cif/schema/cif-core.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/cif-core.js +1 -1
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +3 -4
- package/lib/mol-io/reader/cif/schema/mmcif.js +2 -3
- package/lib/mol-io/reader/dx/parser.js +1 -1
- package/lib/mol-io/writer/ligand-encoder.d.ts +4 -2
- package/lib/mol-io/writer/ligand-encoder.js +9 -4
- package/lib/mol-io/writer/mol/encoder.js +16 -4
- package/lib/mol-io/writer/mol2/encoder.js +17 -4
- package/lib/mol-math/geometry/lookup3d/grid.d.ts +1 -1
- package/lib/mol-math/geometry/lookup3d/grid.js +3 -3
- package/lib/mol-model/structure/model/properties/seconday-structure.d.ts +4 -2
- package/lib/mol-model/structure/model/properties/seconday-structure.js +2 -1
- package/lib/mol-model/structure/model/types/ions.d.ts +2 -2
- package/lib/mol-model/structure/model/types/ions.js +2 -2
- package/lib/mol-model/structure/model/types/saccharides.js +1 -1
- package/lib/mol-model/structure/model/types.d.ts +1 -1
- package/lib/mol-model/structure/model/types.js +43 -41
- package/lib/mol-model-formats/shape/ply.d.ts +2 -2
- package/lib/mol-model-formats/structure/common/property.js +2 -0
- package/lib/mol-model-formats/structure/property/secondary-structure.d.ts +1 -1
- package/lib/mol-model-formats/structure/property/secondary-structure.js +2 -2
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -1
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -1
- package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -3
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
- package/lib/mol-plugin/commands.d.ts +1 -1
- package/lib/mol-plugin/util/viewport-screenshot.d.ts +3 -3
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/helpers/root-structure.js +3 -1
- package/lib/mol-plugin-state/transforms/representation.d.ts +6 -6
- package/lib/mol-plugin-ui/base.d.ts +3 -1
- package/lib/mol-plugin-ui/controls/color.d.ts +1 -1
- package/lib/mol-plugin-ui/controls/common.d.ts +2 -0
- package/lib/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
- package/lib/mol-plugin-ui/hooks/use-behavior.js +20 -7
- package/lib/mol-plugin-ui/plugin.d.ts +2 -0
- package/lib/mol-plugin-ui/plugin.js +2 -2
- package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
- package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
- package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
- package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
- package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
- package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
- package/lib/mol-plugin-ui/skin/base/components/misc.scss +643 -643
- package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
- package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
- package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
- package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
- package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
- package/lib/mol-plugin-ui/skin/base/components/viewport.scss +128 -128
- package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
- package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
- package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
- package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
- package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
- package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
- package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
- package/lib/mol-plugin-ui/skin/blue.scss +1 -1
- package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
- package/lib/mol-plugin-ui/skin/dark.scss +1 -1
- package/lib/mol-plugin-ui/skin/light.scss +1 -1
- package/lib/mol-plugin-ui/spec.d.ts +1 -0
- package/lib/mol-plugin-ui/state/common.js +7 -8
- package/lib/mol-plugin-ui/task.d.ts +2 -21
- package/lib/mol-plugin-ui/task.js +40 -46
- package/lib/mol-plugin-ui/viewport/help.d.ts +4 -1
- package/lib/mol-repr/shape/loci/angle.d.ts +1 -1
- package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -1
- package/lib/mol-repr/shape/loci/orientation.d.ts +1 -1
- package/lib/mol-repr/shape/loci/plane.d.ts +1 -1
- package/lib/mol-repr/shape/model/unitcell.d.ts +1 -1
- package/lib/mol-repr/structure/complex-visual.d.ts +3 -3
- package/lib/mol-repr/structure/params.d.ts +4 -4
- package/lib/mol-repr/structure/registry.d.ts +10 -10
- package/lib/mol-repr/structure/representation/backbone.d.ts +3 -3
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -3
- package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
- package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -3
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -3
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -3
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -3
- package/lib/mol-repr/structure/representation/orientation.d.ts +3 -3
- package/lib/mol-repr/structure/representation/putty.d.ts +3 -3
- package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -3
- package/lib/mol-repr/structure/units-visual.d.ts +4 -4
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -2
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -2
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -1
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -1
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +2 -2
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -4
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
- package/lib/mol-repr/util.d.ts +1 -1
- package/lib/mol-repr/util.js +1 -1
- package/lib/mol-repr/volume/isosurface.d.ts +5 -5
- package/lib/mol-repr/volume/registry.d.ts +1 -1
- package/lib/mol-repr/volume/slice.js +1 -1
- package/lib/mol-script/language/builder.d.ts +0 -1
- package/lib/mol-theme/color/volume-value.d.ts +3 -2
- package/lib/mol-theme/color/volume-value.js +2 -4
- package/lib/mol-theme/color.d.ts +55 -39
- package/lib/mol-theme/color.js +1 -1
- package/lib/mol-theme/theme.d.ts +8 -7
- package/lib/mol-theme/theme.js +1 -1
- package/lib/servers/model/server/query.js +1 -3
- package/lib/servers/model/version.d.ts +1 -1
- package/lib/servers/model/version.js +1 -1
- package/package.json +162 -162
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return _jsx("div", __assign({ className: 'msp-overlay-tasks' }, { children: tracked.valueSeq().map(function (e) { return _jsx(ProgressEntry, { event: e }, e.id); }) }));
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@@ -14,10 +14,13 @@ export declare class BindingsHelp extends React.PureComponent<{
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@@ -58,7 +58,7 @@ export declare const AngleParams: {
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@@ -19,7 +19,7 @@ export declare const OrientationParams: {
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@@ -18,7 +18,7 @@ export declare const PlaneParams: {
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|
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@@ -21,7 +21,7 @@ export declare const UnitcellParams: {
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@@ -47,7 +47,7 @@ export declare const ComplexMeshParams: {
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@@ -80,7 +80,7 @@ export declare const ComplexCylindersParams: {
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@@ -214,7 +214,7 @@ export declare const ComplexTextureMeshParams: {
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@@ -18,7 +18,7 @@ export declare const StructureMeshParams: {
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|
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@@ -45,7 +45,7 @@ export declare const StructureSpheresParams: {
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45
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doubleSided: PD.BooleanParam;
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|
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@@ -73,7 +73,7 @@ export declare const StructureCylindersParams: {
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alpha: PD.Numeric;
|
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@@ -210,7 +210,7 @@ export declare const StructureTextureMeshParams: {
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|
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@@ -22,7 +22,7 @@ export declare namespace StructureRepresentationRegistry {
|
|
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22
22
|
flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
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23
23
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
@@ -62,7 +62,7 @@ export declare namespace StructureRepresentationRegistry {
|
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62
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
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@@ -112,7 +112,7 @@ export declare namespace StructureRepresentationRegistry {
|
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doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
@@ -158,7 +158,7 @@ export declare namespace StructureRepresentationRegistry {
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
@@ -209,7 +209,7 @@ export declare namespace StructureRepresentationRegistry {
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209
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doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
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bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
@@ -271,7 +271,7 @@ export declare namespace StructureRepresentationRegistry {
|
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271
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
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bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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}, "gaussian-surface">;
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'gaussian-volume': import("./representation").StructureRepresentationProvider<{
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@@ -427,7 +427,7 @@ export declare namespace StructureRepresentationRegistry {
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
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bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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}, "molecular-surface">;
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orientation: import("./representation").StructureRepresentationProvider<{
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@@ -442,7 +442,7 @@ export declare namespace StructureRepresentationRegistry {
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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-
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+
transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
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bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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@@ -500,7 +500,7 @@ export declare namespace StructureRepresentationRegistry {
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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-
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503
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+
transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
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bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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@@ -534,7 +534,7 @@ export declare namespace StructureRepresentationRegistry {
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doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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537
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-
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537
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+
transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
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bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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@@ -21,7 +21,7 @@ export declare const BackboneParams: {
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flatShaded: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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24
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-
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24
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+
transparentBackfaces: PD.Select<string>;
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bumpAmplitude: PD.Numeric;
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alpha: PD.Numeric;
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quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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@@ -57,7 +57,7 @@ export declare function getBackboneParams(ctx: ThemeRegistryContext, structure:
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flatShaded: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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60
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-
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60
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+
transparentBackfaces: PD.Select<string>;
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bumpAmplitude: PD.Numeric;
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alpha: PD.Numeric;
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quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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@@ -94,7 +94,7 @@ export declare const BackboneRepresentationProvider: StructureRepresentationProv
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flatShaded: PD.BooleanParam;
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95
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ignoreLight: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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97
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-
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97
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+
transparentBackfaces: PD.Select<string>;
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98
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bumpAmplitude: PD.Numeric;
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alpha: PD.Numeric;
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quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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@@ -36,7 +36,7 @@ export declare const BallAndStickParams: {
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36
36
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doubleSided: PD.BooleanParam;
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37
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ignoreLight: PD.BooleanParam;
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38
38
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xrayShaded: PD.BooleanParam;
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39
|
-
|
|
39
|
+
transparentBackfaces: PD.Select<string>;
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40
40
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bumpAmplitude: PD.Numeric;
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41
41
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alpha: PD.Numeric;
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quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
@@ -89,7 +89,7 @@ export declare function getBallAndStickParams(ctx: ThemeRegistryContext, structu
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89
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doubleSided: PD.BooleanParam;
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90
90
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ignoreLight: PD.BooleanParam;
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91
91
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xrayShaded: PD.BooleanParam;
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|
92
|
-
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|
92
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+
transparentBackfaces: PD.Select<string>;
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93
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bumpAmplitude: PD.Numeric;
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alpha: PD.Numeric;
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95
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quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
@@ -143,7 +143,7 @@ export declare const BallAndStickRepresentationProvider: StructureRepresentation
|
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143
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doubleSided: PD.BooleanParam;
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144
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ignoreLight: PD.BooleanParam;
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145
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|
xrayShaded: PD.BooleanParam;
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|
146
|
-
|
|
146
|
+
transparentBackfaces: PD.Select<string>;
|
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147
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|
bumpAmplitude: PD.Numeric;
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148
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|
alpha: PD.Numeric;
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149
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quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|