molstar 3.6.0 → 3.8.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (410) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -202
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -106
  5. package/build/viewer/molstar.css +1 -1
  6. package/build/viewer/molstar.js +1 -1
  7. package/build/viewer/molstar.js.LICENSE.txt +0 -15
  8. package/lib/apps/docking-viewer/index.html +36 -36
  9. package/lib/apps/viewer/embedded.html +43 -43
  10. package/lib/apps/viewer/index.html +106 -106
  11. package/lib/cli/chem-comp-dict/create-ions.d.ts +2 -1
  12. package/lib/cli/chem-comp-dict/create-ions.js +3 -2
  13. package/lib/cli/cifschema/index.js +1 -1
  14. package/lib/cli/cifschema/util/cif-dic.js +1 -0
  15. package/lib/commonjs/cli/chem-comp-dict/create-ions.d.ts +2 -1
  16. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +3 -2
  17. package/lib/commonjs/cli/cifschema/index.js +1 -1
  18. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
  19. package/lib/commonjs/examples/alpha-orbitals/index.js +20 -15
  20. package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +20 -5
  21. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -1
  22. package/lib/commonjs/extensions/anvil/representation.d.ts +4 -4
  23. package/lib/commonjs/extensions/cellpack/representation.d.ts +1 -1
  24. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
  25. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -1
  26. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
  27. package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +284 -0
  28. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -5
  29. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -2
  30. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -1
  31. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
  32. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -2
  33. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +0 -2
  34. package/lib/commonjs/mol-canvas3d/passes/draw.js +35 -70
  35. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -1
  36. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +1 -1
  37. package/lib/commonjs/mol-canvas3d/passes/pick.js +1 -1
  38. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
  39. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +16 -11
  40. package/lib/commonjs/mol-geo/geometry/color-data.d.ts +7 -10
  41. package/lib/commonjs/mol-geo/geometry/color-data.js +7 -4
  42. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -2
  43. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -2
  44. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -0
  45. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
  46. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -2
  47. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  48. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -1
  49. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -2
  50. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
  51. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +15 -4
  52. package/lib/commonjs/mol-geo/geometry/transparency-data.d.ts +1 -1
  53. package/lib/commonjs/mol-geo/geometry/transparency-data.js +3 -1
  54. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +2 -1
  55. package/lib/commonjs/mol-gl/renderable/cylinders.js +2 -2
  56. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +2 -1
  57. package/lib/commonjs/mol-gl/renderable/mesh.js +2 -2
  58. package/lib/commonjs/mol-gl/renderable/schema.d.ts +2 -2
  59. package/lib/commonjs/mol-gl/renderable/schema.js +2 -2
  60. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +2 -1
  61. package/lib/commonjs/mol-gl/renderable/spheres.js +2 -2
  62. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +2 -1
  63. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +2 -2
  64. package/lib/commonjs/mol-gl/renderer.d.ts +5 -5
  65. package/lib/commonjs/mol-gl/renderer.js +114 -64
  66. package/lib/commonjs/mol-gl/scene.d.ts +1 -0
  67. package/lib/commonjs/mol-gl/scene.js +26 -1
  68. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +1 -1
  69. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +1 -1
  70. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  71. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  72. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +1 -1
  73. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +1 -1
  74. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  75. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  76. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  77. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
  78. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  79. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
  80. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
  81. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
  82. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  83. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  84. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
  85. package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
  86. package/lib/commonjs/mol-gl/shader/outlines.frag.d.ts +3 -2
  87. package/lib/commonjs/mol-gl/shader/outlines.frag.js +3 -2
  88. package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
  89. package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
  90. package/lib/commonjs/mol-gl/shader/ssao.frag.d.ts +2 -2
  91. package/lib/commonjs/mol-gl/shader/ssao.frag.js +2 -2
  92. package/lib/commonjs/mol-gl/webgl/render-target.d.ts +3 -1
  93. package/lib/commonjs/mol-gl/webgl/render-target.js +3 -1
  94. package/lib/commonjs/mol-gl/webgl/renderbuffer.d.ts +2 -1
  95. package/lib/commonjs/mol-gl/webgl/renderbuffer.js +8 -1
  96. package/lib/commonjs/mol-gl/webgl/state.d.ts +7 -1
  97. package/lib/commonjs/mol-gl/webgl/state.js +28 -1
  98. package/lib/commonjs/mol-gl/webgl/texture.js +3 -0
  99. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
  100. package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
  101. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
  102. package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
  103. package/lib/commonjs/mol-io/reader/cif/schema/cif-core.d.ts +1 -1
  104. package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js +1 -1
  105. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +3 -4
  106. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +2 -3
  107. package/lib/commonjs/mol-io/reader/dx/parser.js +1 -1
  108. package/lib/commonjs/mol-io/writer/ligand-encoder.d.ts +4 -2
  109. package/lib/commonjs/mol-io/writer/ligand-encoder.js +9 -4
  110. package/lib/commonjs/mol-io/writer/mol/encoder.js +16 -4
  111. package/lib/commonjs/mol-io/writer/mol2/encoder.js +17 -4
  112. package/lib/commonjs/mol-math/geometry/lookup3d/grid.d.ts +1 -1
  113. package/lib/commonjs/mol-math/geometry/lookup3d/grid.js +3 -3
  114. package/lib/commonjs/mol-model/structure/model/properties/seconday-structure.d.ts +4 -2
  115. package/lib/commonjs/mol-model/structure/model/properties/seconday-structure.js +2 -1
  116. package/lib/commonjs/mol-model/structure/model/types/ions.d.ts +2 -2
  117. package/lib/commonjs/mol-model/structure/model/types/ions.js +2 -2
  118. package/lib/commonjs/mol-model/structure/model/types/saccharides.js +1 -1
  119. package/lib/commonjs/mol-model/structure/model/types.d.ts +1 -1
  120. package/lib/commonjs/mol-model/structure/model/types.js +43 -41
  121. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +2 -2
  122. package/lib/commonjs/mol-model-formats/structure/common/property.js +2 -0
  123. package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.d.ts +1 -1
  124. package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.js +2 -2
  125. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -1
  126. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -1
  127. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -3
  128. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
  129. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  130. package/lib/commonjs/mol-plugin/commands.d.ts +1 -1
  131. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +3 -3
  132. package/lib/commonjs/mol-plugin-state/helpers/root-structure.js +3 -1
  133. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +6 -6
  134. package/lib/commonjs/mol-plugin-ui/base.d.ts +3 -1
  135. package/lib/commonjs/mol-plugin-ui/controls/color.d.ts +1 -1
  136. package/lib/commonjs/mol-plugin-ui/controls/common.d.ts +2 -0
  137. package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
  138. package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.js +21 -7
  139. package/lib/commonjs/mol-plugin-ui/plugin.d.ts +2 -0
  140. package/lib/commonjs/mol-plugin-ui/plugin.js +2 -2
  141. package/lib/commonjs/mol-plugin-ui/spec.d.ts +1 -0
  142. package/lib/commonjs/mol-plugin-ui/state/common.js +6 -7
  143. package/lib/commonjs/mol-plugin-ui/task.d.ts +2 -21
  144. package/lib/commonjs/mol-plugin-ui/task.js +39 -43
  145. package/lib/commonjs/mol-plugin-ui/viewport/help.d.ts +4 -1
  146. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +1 -1
  147. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +1 -1
  148. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -1
  149. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -1
  150. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +1 -1
  151. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +3 -3
  152. package/lib/commonjs/mol-repr/structure/params.d.ts +4 -4
  153. package/lib/commonjs/mol-repr/structure/registry.d.ts +10 -10
  154. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -3
  155. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +3 -3
  156. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
  157. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -3
  158. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +3 -3
  159. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -3
  160. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -3
  161. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -3
  162. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -3
  163. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -3
  164. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +4 -4
  165. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -2
  166. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -2
  167. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -1
  168. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -1
  169. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -1
  170. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +2 -2
  171. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
  172. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -4
  173. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -1
  174. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
  175. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
  176. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
  177. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
  178. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
  179. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
  180. package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
  181. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -1
  182. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
  183. package/lib/commonjs/mol-repr/util.d.ts +1 -1
  184. package/lib/commonjs/mol-repr/util.js +1 -1
  185. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +5 -5
  186. package/lib/commonjs/mol-repr/volume/registry.d.ts +1 -1
  187. package/lib/commonjs/mol-repr/volume/slice.js +1 -1
  188. package/lib/commonjs/mol-script/language/builder.d.ts +0 -1
  189. package/lib/commonjs/mol-theme/color/volume-value.d.ts +3 -2
  190. package/lib/commonjs/mol-theme/color/volume-value.js +1 -3
  191. package/lib/commonjs/mol-theme/color.d.ts +55 -39
  192. package/lib/commonjs/mol-theme/color.js +1 -1
  193. package/lib/commonjs/mol-theme/theme.d.ts +8 -7
  194. package/lib/commonjs/mol-theme/theme.js +1 -1
  195. package/lib/commonjs/servers/model/server/query.js +1 -3
  196. package/lib/commonjs/servers/model/version.d.ts +1 -1
  197. package/lib/commonjs/servers/model/version.js +1 -1
  198. package/lib/examples/alpha-orbitals/index.html +61 -61
  199. package/lib/examples/alpha-orbitals/index.js +20 -15
  200. package/lib/examples/basic-wrapper/index.html +137 -137
  201. package/lib/examples/lighting/index.html +88 -88
  202. package/lib/examples/proteopedia-wrapper/coloring.d.ts +20 -5
  203. package/lib/examples/proteopedia-wrapper/index.html +236 -236
  204. package/lib/extensions/anvil/behavior.d.ts +1 -1
  205. package/lib/extensions/anvil/representation.d.ts +4 -4
  206. package/lib/extensions/cellpack/representation.d.ts +1 -1
  207. package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
  208. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -1
  209. package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
  210. package/lib/extensions/rcsb/graphql/types.d.ts +284 -0
  211. package/lib/extensions/rcsb/validation-report/representation.d.ts +5 -5
  212. package/lib/mol-canvas3d/canvas3d.d.ts +2 -2
  213. package/lib/mol-canvas3d/helper/camera-helper.d.ts +1 -1
  214. package/lib/mol-canvas3d/helper/handle-helper.d.ts +1 -1
  215. package/lib/mol-canvas3d/helper/helper.d.ts +2 -2
  216. package/lib/mol-canvas3d/passes/draw.d.ts +0 -2
  217. package/lib/mol-canvas3d/passes/draw.js +32 -67
  218. package/lib/mol-canvas3d/passes/image.d.ts +1 -1
  219. package/lib/mol-canvas3d/passes/pick.d.ts +1 -1
  220. package/lib/mol-canvas3d/passes/pick.js +1 -1
  221. package/lib/mol-canvas3d/passes/postprocessing.d.ts +1 -0
  222. package/lib/mol-canvas3d/passes/postprocessing.js +16 -11
  223. package/lib/mol-geo/geometry/color-data.d.ts +7 -10
  224. package/lib/mol-geo/geometry/color-data.js +7 -4
  225. package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +2 -2
  226. package/lib/mol-geo/geometry/cylinders/cylinders.js +3 -2
  227. package/lib/mol-geo/geometry/lines/lines.d.ts +1 -0
  228. package/lib/mol-geo/geometry/mesh/mesh.d.ts +1 -1
  229. package/lib/mol-geo/geometry/mesh/mesh.js +3 -2
  230. package/lib/mol-geo/geometry/points/points.d.ts +1 -1
  231. package/lib/mol-geo/geometry/spheres/spheres.d.ts +1 -1
  232. package/lib/mol-geo/geometry/spheres/spheres.js +3 -2
  233. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
  234. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +15 -4
  235. package/lib/mol-geo/geometry/transparency-data.d.ts +1 -1
  236. package/lib/mol-geo/geometry/transparency-data.js +3 -1
  237. package/lib/mol-gl/renderable/cylinders.d.ts +2 -1
  238. package/lib/mol-gl/renderable/cylinders.js +2 -2
  239. package/lib/mol-gl/renderable/mesh.d.ts +2 -1
  240. package/lib/mol-gl/renderable/mesh.js +2 -2
  241. package/lib/mol-gl/renderable/schema.d.ts +2 -2
  242. package/lib/mol-gl/renderable/schema.js +2 -2
  243. package/lib/mol-gl/renderable/spheres.d.ts +2 -1
  244. package/lib/mol-gl/renderable/spheres.js +2 -2
  245. package/lib/mol-gl/renderable/texture-mesh.d.ts +2 -1
  246. package/lib/mol-gl/renderable/texture-mesh.js +2 -2
  247. package/lib/mol-gl/renderer.d.ts +5 -5
  248. package/lib/mol-gl/renderer.js +114 -64
  249. package/lib/mol-gl/scene.d.ts +1 -0
  250. package/lib/mol-gl/scene.js +26 -1
  251. package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +1 -1
  252. package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.js +1 -1
  253. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  254. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  255. package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +1 -1
  256. package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.js +1 -1
  257. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  258. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  259. package/lib/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  260. package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
  261. package/lib/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  262. package/lib/mol-gl/shader/chunks/common.glsl.js +1 -1
  263. package/lib/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
  264. package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
  265. package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  266. package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
  267. package/lib/mol-gl/shader/image.frag.d.ts +1 -1
  268. package/lib/mol-gl/shader/image.frag.js +1 -1
  269. package/lib/mol-gl/shader/outlines.frag.d.ts +3 -2
  270. package/lib/mol-gl/shader/outlines.frag.js +3 -2
  271. package/lib/mol-gl/shader/postprocessing.frag.d.ts +1 -1
  272. package/lib/mol-gl/shader/postprocessing.frag.js +1 -1
  273. package/lib/mol-gl/shader/ssao.frag.d.ts +2 -2
  274. package/lib/mol-gl/shader/ssao.frag.js +2 -2
  275. package/lib/mol-gl/webgl/render-target.d.ts +3 -1
  276. package/lib/mol-gl/webgl/render-target.js +3 -1
  277. package/lib/mol-gl/webgl/renderbuffer.d.ts +2 -1
  278. package/lib/mol-gl/webgl/renderbuffer.js +8 -1
  279. package/lib/mol-gl/webgl/state.d.ts +7 -1
  280. package/lib/mol-gl/webgl/state.js +28 -1
  281. package/lib/mol-gl/webgl/texture.js +3 -0
  282. package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
  283. package/lib/mol-io/reader/cif/schema/bird.js +1 -1
  284. package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
  285. package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
  286. package/lib/mol-io/reader/cif/schema/cif-core.d.ts +1 -1
  287. package/lib/mol-io/reader/cif/schema/cif-core.js +1 -1
  288. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +3 -4
  289. package/lib/mol-io/reader/cif/schema/mmcif.js +2 -3
  290. package/lib/mol-io/reader/dx/parser.js +1 -1
  291. package/lib/mol-io/writer/ligand-encoder.d.ts +4 -2
  292. package/lib/mol-io/writer/ligand-encoder.js +9 -4
  293. package/lib/mol-io/writer/mol/encoder.js +16 -4
  294. package/lib/mol-io/writer/mol2/encoder.js +17 -4
  295. package/lib/mol-math/geometry/lookup3d/grid.d.ts +1 -1
  296. package/lib/mol-math/geometry/lookup3d/grid.js +3 -3
  297. package/lib/mol-model/structure/model/properties/seconday-structure.d.ts +4 -2
  298. package/lib/mol-model/structure/model/properties/seconday-structure.js +2 -1
  299. package/lib/mol-model/structure/model/types/ions.d.ts +2 -2
  300. package/lib/mol-model/structure/model/types/ions.js +2 -2
  301. package/lib/mol-model/structure/model/types/saccharides.js +1 -1
  302. package/lib/mol-model/structure/model/types.d.ts +1 -1
  303. package/lib/mol-model/structure/model/types.js +43 -41
  304. package/lib/mol-model-formats/shape/ply.d.ts +2 -2
  305. package/lib/mol-model-formats/structure/common/property.js +2 -0
  306. package/lib/mol-model-formats/structure/property/secondary-structure.d.ts +1 -1
  307. package/lib/mol-model-formats/structure/property/secondary-structure.js +2 -2
  308. package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -1
  309. package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -1
  310. package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -3
  311. package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
  312. package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  313. package/lib/mol-plugin/commands.d.ts +1 -1
  314. package/lib/mol-plugin/util/viewport-screenshot.d.ts +3 -3
  315. package/lib/mol-plugin/version.js +2 -2
  316. package/lib/mol-plugin-state/helpers/root-structure.js +3 -1
  317. package/lib/mol-plugin-state/transforms/representation.d.ts +6 -6
  318. package/lib/mol-plugin-ui/base.d.ts +3 -1
  319. package/lib/mol-plugin-ui/controls/color.d.ts +1 -1
  320. package/lib/mol-plugin-ui/controls/common.d.ts +2 -0
  321. package/lib/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
  322. package/lib/mol-plugin-ui/hooks/use-behavior.js +20 -7
  323. package/lib/mol-plugin-ui/plugin.d.ts +2 -0
  324. package/lib/mol-plugin-ui/plugin.js +2 -2
  325. package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
  326. package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
  327. package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
  328. package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
  329. package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
  330. package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
  331. package/lib/mol-plugin-ui/skin/base/components/misc.scss +643 -643
  332. package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
  333. package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
  334. package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
  335. package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
  336. package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
  337. package/lib/mol-plugin-ui/skin/base/components/viewport.scss +128 -128
  338. package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
  339. package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
  340. package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
  341. package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
  342. package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
  343. package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
  344. package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
  345. package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
  346. package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
  347. package/lib/mol-plugin-ui/skin/blue.scss +1 -1
  348. package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
  349. package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
  350. package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
  351. package/lib/mol-plugin-ui/skin/dark.scss +1 -1
  352. package/lib/mol-plugin-ui/skin/light.scss +1 -1
  353. package/lib/mol-plugin-ui/spec.d.ts +1 -0
  354. package/lib/mol-plugin-ui/state/common.js +7 -8
  355. package/lib/mol-plugin-ui/task.d.ts +2 -21
  356. package/lib/mol-plugin-ui/task.js +40 -46
  357. package/lib/mol-plugin-ui/viewport/help.d.ts +4 -1
  358. package/lib/mol-repr/shape/loci/angle.d.ts +1 -1
  359. package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -1
  360. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -1
  361. package/lib/mol-repr/shape/loci/plane.d.ts +1 -1
  362. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -1
  363. package/lib/mol-repr/structure/complex-visual.d.ts +3 -3
  364. package/lib/mol-repr/structure/params.d.ts +4 -4
  365. package/lib/mol-repr/structure/registry.d.ts +10 -10
  366. package/lib/mol-repr/structure/representation/backbone.d.ts +3 -3
  367. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -3
  368. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
  369. package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -3
  370. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -3
  371. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -3
  372. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -3
  373. package/lib/mol-repr/structure/representation/orientation.d.ts +3 -3
  374. package/lib/mol-repr/structure/representation/putty.d.ts +3 -3
  375. package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -3
  376. package/lib/mol-repr/structure/units-visual.d.ts +4 -4
  377. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -2
  378. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -2
  379. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -1
  380. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -1
  381. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -1
  382. package/lib/mol-repr/structure/visual/element-sphere.d.ts +2 -2
  383. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
  384. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -4
  385. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -1
  386. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
  387. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
  388. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
  389. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
  390. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
  391. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
  392. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
  393. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -1
  394. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
  395. package/lib/mol-repr/util.d.ts +1 -1
  396. package/lib/mol-repr/util.js +1 -1
  397. package/lib/mol-repr/volume/isosurface.d.ts +5 -5
  398. package/lib/mol-repr/volume/registry.d.ts +1 -1
  399. package/lib/mol-repr/volume/slice.js +1 -1
  400. package/lib/mol-script/language/builder.d.ts +0 -1
  401. package/lib/mol-theme/color/volume-value.d.ts +3 -2
  402. package/lib/mol-theme/color/volume-value.js +2 -4
  403. package/lib/mol-theme/color.d.ts +55 -39
  404. package/lib/mol-theme/color.js +1 -1
  405. package/lib/mol-theme/theme.d.ts +8 -7
  406. package/lib/mol-theme/theme.js +1 -1
  407. package/lib/servers/model/server/query.js +1 -3
  408. package/lib/servers/model/version.d.ts +1 -1
  409. package/lib/servers/model/version.js +1 -1
  410. package/package.json +162 -162
@@ -1,24 +1,24 @@
1
- $default-background: #2D3E50;
2
- $font-color: #EDF1F2;
3
- $hover-font-color: #3B9AD9;
4
- $entity-current-font-color: #FFFFFF;
5
- $msp-btn-remove-background: #BF3A31;
6
- $msp-btn-remove-hover-font-color:#ffffff;
7
- $msp-btn-commit-on-font-color: #ffffff;
8
- $entity-badge-font-color: #ccd4e0;
9
-
10
- // used in LOG
11
- $log-message: #0CCA5D;
12
- $log-info: #5E3673;
13
- $log-warning: #FCC937;
14
- $log-error: #FD354B;
15
-
16
- $logo-background: rgba(0,0,0,0.75);
17
-
18
- @function color-lower-contrast($color, $amount) {
19
- @return darken($color, $amount);
20
- }
21
-
22
- @function color-increase-contrast($color, $amount) {
23
- @return lighten($color, $amount);
1
+ $default-background: #2D3E50;
2
+ $font-color: #EDF1F2;
3
+ $hover-font-color: #3B9AD9;
4
+ $entity-current-font-color: #FFFFFF;
5
+ $msp-btn-remove-background: #BF3A31;
6
+ $msp-btn-remove-hover-font-color:#ffffff;
7
+ $msp-btn-commit-on-font-color: #ffffff;
8
+ $entity-badge-font-color: #ccd4e0;
9
+
10
+ // used in LOG
11
+ $log-message: #0CCA5D;
12
+ $log-info: #5E3673;
13
+ $log-warning: #FCC937;
14
+ $log-error: #FD354B;
15
+
16
+ $logo-background: rgba(0,0,0,0.75);
17
+
18
+ @function color-lower-contrast($color, $amount) {
19
+ @return darken($color, $amount);
20
+ }
21
+
22
+ @function color-increase-contrast($color, $amount) {
23
+ @return lighten($color, $amount);
24
24
  }
@@ -1,24 +1,24 @@
1
- $default-background: #111318;
2
- $font-color: #ccd4e0;
3
- $hover-font-color: #51A2FB;
4
- $entity-current-font-color: #68BEFD;
5
- $msp-btn-remove-background: #DE0A28;
6
- $msp-btn-remove-hover-font-color:#F2F4F7;
7
- $msp-btn-commit-on-font-color: #68BEFD;
8
- $entity-badge-font-color: #ccd4e0;
9
-
10
- // used in LOG
11
- $log-message: #0CCA5D;
12
- $log-info: #5E3673;
13
- $log-warning: #FCC937;
14
- $log-error: #FD354B;
15
-
16
- $logo-background: rgba(0,0,0,0.75);
17
-
18
- @function color-lower-contrast($color, $amount) {
19
- @return darken($color, $amount);
20
- }
21
-
22
- @function color-increase-contrast($color, $amount) {
23
- @return lighten($color, $amount);
1
+ $default-background: #111318;
2
+ $font-color: #ccd4e0;
3
+ $hover-font-color: #51A2FB;
4
+ $entity-current-font-color: #68BEFD;
5
+ $msp-btn-remove-background: #DE0A28;
6
+ $msp-btn-remove-hover-font-color:#F2F4F7;
7
+ $msp-btn-commit-on-font-color: #68BEFD;
8
+ $entity-badge-font-color: #ccd4e0;
9
+
10
+ // used in LOG
11
+ $log-message: #0CCA5D;
12
+ $log-info: #5E3673;
13
+ $log-warning: #FCC937;
14
+ $log-error: #FD354B;
15
+
16
+ $logo-background: rgba(0,0,0,0.75);
17
+
18
+ @function color-lower-contrast($color, $amount) {
19
+ @return darken($color, $amount);
20
+ }
21
+
22
+ @function color-increase-contrast($color, $amount) {
23
+ @return lighten($color, $amount);
24
24
  }
@@ -1,30 +1,30 @@
1
- // this is complement of the dark theme
2
-
3
- @function compl($color) {
4
- @return rgb(255 - red($color), 255 - green($color), 255 - blue($color));
5
- }
6
-
7
- $default-background: compl(#111318);
8
- $font-color: compl(#ccd4e0);
9
- $hover-font-color: compl(#51A2FB);
10
- $entity-current-font-color: compl(#68BEFD);
11
- $msp-btn-commit-on-font-color: compl(#68BEFD);
12
- $entity-badge-font-color: lighten(#ccd4e0,10%);
13
- $msp-btn-remove-background: #DE0A28;
14
- $msp-btn-remove-hover-font-color:#F2F4F7;
15
-
16
- // used in LOG
17
- $log-message: #0CCA5D;
18
- $log-info: #5E3673;
19
- $log-warning: #FCC937;
20
- $log-error: #FD354B;
21
-
22
- $logo-background: compl(#111318);
23
-
24
- @function color-lower-contrast($color, $amount) {
25
- @return lighten($color, $amount);
26
- }
27
-
28
- @function color-increase-contrast($color, $amount) {
29
- @return darken($color, $amount);
1
+ // this is complement of the dark theme
2
+
3
+ @function compl($color) {
4
+ @return rgb(255 - red($color), 255 - green($color), 255 - blue($color));
5
+ }
6
+
7
+ $default-background: compl(#111318);
8
+ $font-color: compl(#ccd4e0);
9
+ $hover-font-color: compl(#51A2FB);
10
+ $entity-current-font-color: compl(#68BEFD);
11
+ $msp-btn-commit-on-font-color: compl(#68BEFD);
12
+ $entity-badge-font-color: lighten(#ccd4e0,10%);
13
+ $msp-btn-remove-background: #DE0A28;
14
+ $msp-btn-remove-hover-font-color:#F2F4F7;
15
+
16
+ // used in LOG
17
+ $log-message: #0CCA5D;
18
+ $log-info: #5E3673;
19
+ $log-warning: #FCC937;
20
+ $log-error: #FD354B;
21
+
22
+ $logo-background: compl(#111318);
23
+
24
+ @function color-lower-contrast($color, $amount) {
25
+ @return lighten($color, $amount);
26
+ }
27
+
28
+ @function color-increase-contrast($color, $amount) {
29
+ @return darken($color, $amount);
30
30
  }
@@ -1,2 +1,2 @@
1
- @import 'colors/dark';
1
+ @import 'colors/dark';
2
2
  @import 'base/base';
@@ -1,2 +1,2 @@
1
- @import 'colors/light';
1
+ @import 'colors/light';
2
2
  @import 'base/base';
@@ -20,6 +20,7 @@ interface PluginUISpec extends PluginSpec {
20
20
  controls?: React.ComponentClass;
21
21
  };
22
22
  hideTaskOverlay?: boolean;
23
+ disableDragOverlay?: boolean;
23
24
  };
24
25
  }
25
26
  declare namespace PluginUISpec {
@@ -3,7 +3,7 @@ import { jsx as _jsx, jsxs as _jsxs, Fragment as _Fragment } from "react/jsx-run
3
3
  import { PurePluginUIComponent } from '../base';
4
4
  import { ParameterControls } from '../controls/parameters';
5
5
  import { ParamDefinition as PD } from '../../mol-util/param-definition';
6
- import { Subject } from 'rxjs';
6
+ import { BehaviorSubject, skip } from 'rxjs';
7
7
  import { Icon, RefreshSvg, CheckSvg, ArrowRightSvg, ArrowDropDownSvg, TuneSvg } from '../controls/icons';
8
8
  import { ExpandGroup, ToggleButton, Button, IconButton } from '../controls/common';
9
9
  export { StateTransformParameters, TransformControlBase };
@@ -71,7 +71,7 @@ var TransformControlBase = /** @class */ (function (_super) {
71
71
  __extends(TransformControlBase, _super);
72
72
  function TransformControlBase() {
73
73
  var _this = _super !== null && _super.apply(this, arguments) || this;
74
- _this.busy = new Subject();
74
+ _this.busy = new BehaviorSubject(false);
75
75
  _this.onEnter = function () {
76
76
  if (_this.state.error)
77
77
  return;
@@ -138,13 +138,12 @@ var TransformControlBase = /** @class */ (function (_super) {
138
138
  };
139
139
  TransformControlBase.prototype.componentDidMount = function () {
140
140
  var _this = this;
141
- this.subscribe(this.plugin.behaviors.state.isBusy, function (b) {
142
- if (_this.state.busy !== b)
143
- _this.busy.next(b);
141
+ this.subscribe(this.plugin.behaviors.state.isBusy, function (busy) {
142
+ if (_this.busy.value !== busy)
143
+ _this.busy.next(busy);
144
144
  });
145
- this.subscribe(this.busy, function (busy) {
146
- if (_this.state.busy !== busy)
147
- _this.setState({ busy: busy });
145
+ this.subscribe(this.busy.pipe(skip(1)), function (busy) {
146
+ _this.setState({ busy: busy });
148
147
  });
149
148
  };
150
149
  TransformControlBase.prototype.renderApply = function () {
@@ -4,24 +4,5 @@
4
4
  * @author David Sehnal <david.sehnal@gmail.com>
5
5
  */
6
6
  /// <reference types="react" />
7
- import { PluginUIComponent } from './base';
8
- import { OrderedMap } from 'immutable';
9
- import { TaskManager } from '../mol-plugin/util/task-manager';
10
- export declare class BackgroundTaskProgress extends PluginUIComponent<{}, {
11
- tracked: OrderedMap<number, TaskManager.ProgressEvent>;
12
- }> {
13
- componentDidMount(): void;
14
- state: {
15
- tracked: OrderedMap<number, TaskManager.ProgressEvent>;
16
- };
17
- render(): JSX.Element;
18
- }
19
- export declare class OverlayTaskProgress extends PluginUIComponent<{}, {
20
- tracked: OrderedMap<number, TaskManager.ProgressEvent>;
21
- }> {
22
- componentDidMount(): void;
23
- state: {
24
- tracked: OrderedMap<number, TaskManager.ProgressEvent>;
25
- };
26
- render(): JSX.Element | null;
27
- }
7
+ export declare function BackgroundTaskProgress(): JSX.Element;
8
+ export declare function OverlayTaskProgress(): JSX.Element | null;
@@ -5,36 +5,33 @@ import { jsx as _jsx, Fragment as _Fragment, jsxs as _jsxs } from "react/jsx-run
5
5
  *
6
6
  * @author David Sehnal <david.sehnal@gmail.com>
7
7
  */
8
- import { PluginUIComponent } from './base';
8
+ import { PluginReactContext, PluginUIComponent } from './base';
9
9
  import { OrderedMap } from 'immutable';
10
- import { filter } from 'rxjs/operators';
11
10
  import { IconButton } from './controls/common';
12
11
  import { CancelSvg } from './controls/icons';
13
- var BackgroundTaskProgress = /** @class */ (function (_super) {
14
- __extends(BackgroundTaskProgress, _super);
15
- function BackgroundTaskProgress() {
16
- var _this = _super !== null && _super.apply(this, arguments) || this;
17
- _this.state = { tracked: OrderedMap() };
18
- return _this;
19
- }
20
- BackgroundTaskProgress.prototype.componentDidMount = function () {
21
- var _this = this;
22
- var _a;
23
- var hideOverlay = !!((_a = this.plugin.spec.components) === null || _a === void 0 ? void 0 : _a.hideTaskOverlay);
24
- this.subscribe(this.plugin.events.task.progress.pipe(filter(function (e) { return e.level === 'background' && (hideOverlay || !e.useOverlay); })), function (e) {
25
- _this.setState({ tracked: _this.state.tracked.set(e.id, e) });
12
+ import { useContext, useEffect, useState } from 'react';
13
+ export function BackgroundTaskProgress() {
14
+ var plugin = useContext(PluginReactContext);
15
+ var _a = useState(OrderedMap()), tracked = _a[0], setTracked = _a[1];
16
+ useEffect(function () {
17
+ var started = plugin.events.task.progress.subscribe(function (e) {
18
+ var _a;
19
+ var hideOverlay = !!((_a = plugin.spec.components) === null || _a === void 0 ? void 0 : _a.hideTaskOverlay);
20
+ if (e.level === 'background' && (hideOverlay || !e.useOverlay)) {
21
+ setTracked(function (tracked) { return tracked.set(e.id, e); });
22
+ }
26
23
  });
27
- this.subscribe(this.plugin.events.task.finished, function (_a) {
24
+ var finished = plugin.events.task.finished.subscribe(function (_a) {
28
25
  var id = _a.id;
29
- _this.setState({ tracked: _this.state.tracked.delete(id) });
26
+ setTracked(function (tracked) { return tracked.delete(id); });
30
27
  });
31
- };
32
- BackgroundTaskProgress.prototype.render = function () {
33
- return _jsx("div", __assign({ className: 'msp-background-tasks' }, { children: this.state.tracked.valueSeq().map(function (e) { return _jsx(ProgressEntry, { event: e }, e.id); }) }));
34
- };
35
- return BackgroundTaskProgress;
36
- }(PluginUIComponent));
37
- export { BackgroundTaskProgress };
28
+ return function () {
29
+ started.unsubscribe();
30
+ finished.unsubscribe();
31
+ };
32
+ }, [plugin]);
33
+ return _jsx("div", __assign({ className: 'msp-background-tasks' }, { children: tracked.valueSeq().map(function (e) { return _jsx(ProgressEntry, { event: e }, e.id); }) }));
34
+ }
38
35
  var ProgressEntry = /** @class */ (function (_super) {
39
36
  __extends(ProgressEntry, _super);
40
37
  function ProgressEntry() {
@@ -67,28 +64,25 @@ function countSubtasks(progress) {
67
64
  }
68
65
  return sum;
69
66
  }
70
- var OverlayTaskProgress = /** @class */ (function (_super) {
71
- __extends(OverlayTaskProgress, _super);
72
- function OverlayTaskProgress() {
73
- var _this = _super !== null && _super.apply(this, arguments) || this;
74
- _this.state = { tracked: OrderedMap() };
75
- return _this;
76
- }
77
- OverlayTaskProgress.prototype.componentDidMount = function () {
78
- var _this = this;
79
- this.subscribe(this.plugin.events.task.progress.pipe(filter(function (e) { return !!e.useOverlay; })), function (e) {
80
- _this.setState({ tracked: _this.state.tracked.set(e.id, e) });
67
+ export function OverlayTaskProgress() {
68
+ var plugin = useContext(PluginReactContext);
69
+ var _a = useState(OrderedMap()), tracked = _a[0], setTracked = _a[1];
70
+ useEffect(function () {
71
+ var started = plugin.events.task.progress.subscribe(function (e) {
72
+ if (!!e.useOverlay) {
73
+ setTracked(function (tracked) { return tracked.set(e.id, e); });
74
+ }
81
75
  });
82
- this.subscribe(this.plugin.events.task.finished, function (_a) {
76
+ var finished = plugin.events.task.finished.subscribe(function (_a) {
83
77
  var id = _a.id;
84
- _this.setState({ tracked: _this.state.tracked.delete(id) });
78
+ setTracked(function (tracked) { return tracked.delete(id); });
85
79
  });
86
- };
87
- OverlayTaskProgress.prototype.render = function () {
88
- if (this.state.tracked.size === 0)
89
- return null;
90
- return _jsx("div", __assign({ className: 'msp-overlay-tasks' }, { children: this.state.tracked.valueSeq().map(function (e) { return _jsx(ProgressEntry, { event: e }, e.id); }) }));
91
- };
92
- return OverlayTaskProgress;
93
- }(PluginUIComponent));
94
- export { OverlayTaskProgress };
80
+ return function () {
81
+ started.unsubscribe();
82
+ finished.unsubscribe();
83
+ };
84
+ }, [plugin]);
85
+ if (tracked.size === 0)
86
+ return null;
87
+ return _jsx("div", __assign({ className: 'msp-overlay-tasks' }, { children: tracked.valueSeq().map(function (e) { return _jsx(ProgressEntry, { event: e }, e.id); }) }));
88
+ }
@@ -14,10 +14,13 @@ export declare class BindingsHelp extends React.PureComponent<{
14
14
  getBindingComponents(): JSX.Element;
15
15
  render(): JSX.Element;
16
16
  }
17
- export declare class HelpText extends React.PureComponent {
17
+ export declare class HelpText extends React.PureComponent<{
18
+ children?: any;
19
+ }> {
18
20
  render(): JSX.Element;
19
21
  }
20
22
  export declare class HelpGroup extends React.PureComponent<{
23
+ children?: any;
21
24
  header: string;
22
25
  initiallyExpanded?: boolean;
23
26
  }, {
@@ -58,7 +58,7 @@ export declare const AngleParams: {
58
58
  flipSided: PD.BooleanParam;
59
59
  flatShaded: PD.BooleanParam;
60
60
  xrayShaded: PD.BooleanParam;
61
- allowTransparentBackfaces: PD.BooleanParam;
61
+ transparentBackfaces: PD.Select<string>;
62
62
  bumpFrequency: PD.Numeric;
63
63
  bumpAmplitude: PD.Numeric;
64
64
  lineSizeAttenuation: PD.BooleanParam;
@@ -58,7 +58,7 @@ export declare const DihedralParams: {
58
58
  flipSided: PD.BooleanParam;
59
59
  flatShaded: PD.BooleanParam;
60
60
  xrayShaded: PD.BooleanParam;
61
- allowTransparentBackfaces: PD.BooleanParam;
61
+ transparentBackfaces: PD.Select<string>;
62
62
  bumpFrequency: PD.Numeric;
63
63
  bumpAmplitude: PD.Numeric;
64
64
  lineSizeAttenuation: PD.BooleanParam;
@@ -19,7 +19,7 @@ export declare const OrientationParams: {
19
19
  flatShaded: PD.BooleanParam;
20
20
  ignoreLight: PD.BooleanParam;
21
21
  xrayShaded: PD.BooleanParam;
22
- allowTransparentBackfaces: PD.BooleanParam;
22
+ transparentBackfaces: PD.Select<string>;
23
23
  bumpFrequency: PD.Numeric;
24
24
  bumpAmplitude: PD.Numeric;
25
25
  alpha: PD.Numeric;
@@ -18,7 +18,7 @@ export declare const PlaneParams: {
18
18
  flatShaded: PD.BooleanParam;
19
19
  ignoreLight: PD.BooleanParam;
20
20
  xrayShaded: PD.BooleanParam;
21
- allowTransparentBackfaces: PD.BooleanParam;
21
+ transparentBackfaces: PD.Select<string>;
22
22
  bumpFrequency: PD.Numeric;
23
23
  bumpAmplitude: PD.Numeric;
24
24
  alpha: PD.Numeric;
@@ -21,7 +21,7 @@ export declare const UnitcellParams: {
21
21
  flatShaded: PD.BooleanParam;
22
22
  ignoreLight: PD.BooleanParam;
23
23
  xrayShaded: PD.BooleanParam;
24
- allowTransparentBackfaces: PD.BooleanParam;
24
+ transparentBackfaces: PD.Select<string>;
25
25
  bumpFrequency: PD.Numeric;
26
26
  bumpAmplitude: PD.Numeric;
27
27
  alpha: PD.Numeric;
@@ -47,7 +47,7 @@ export declare const ComplexMeshParams: {
47
47
  flatShaded: PD.BooleanParam;
48
48
  ignoreLight: PD.BooleanParam;
49
49
  xrayShaded: PD.BooleanParam;
50
- allowTransparentBackfaces: PD.BooleanParam;
50
+ transparentBackfaces: PD.Select<string>;
51
51
  bumpFrequency: PD.Numeric;
52
52
  bumpAmplitude: PD.Numeric;
53
53
  alpha: PD.Numeric;
@@ -80,7 +80,7 @@ export declare const ComplexCylindersParams: {
80
80
  doubleSided: PD.BooleanParam;
81
81
  ignoreLight: PD.BooleanParam;
82
82
  xrayShaded: PD.BooleanParam;
83
- allowTransparentBackfaces: PD.BooleanParam;
83
+ transparentBackfaces: PD.Select<string>;
84
84
  bumpFrequency: PD.Numeric;
85
85
  bumpAmplitude: PD.Numeric;
86
86
  alpha: PD.Numeric;
@@ -214,7 +214,7 @@ export declare const ComplexTextureMeshParams: {
214
214
  flatShaded: PD.BooleanParam;
215
215
  ignoreLight: PD.BooleanParam;
216
216
  xrayShaded: PD.BooleanParam;
217
- allowTransparentBackfaces: PD.BooleanParam;
217
+ transparentBackfaces: PD.Select<string>;
218
218
  bumpFrequency: PD.Numeric;
219
219
  bumpAmplitude: PD.Numeric;
220
220
  alpha: PD.Numeric;
@@ -18,7 +18,7 @@ export declare const StructureMeshParams: {
18
18
  flatShaded: PD.BooleanParam;
19
19
  ignoreLight: PD.BooleanParam;
20
20
  xrayShaded: PD.BooleanParam;
21
- allowTransparentBackfaces: PD.BooleanParam;
21
+ transparentBackfaces: PD.Select<string>;
22
22
  bumpFrequency: PD.Numeric;
23
23
  bumpAmplitude: PD.Numeric;
24
24
  alpha: PD.Numeric;
@@ -45,7 +45,7 @@ export declare const StructureSpheresParams: {
45
45
  doubleSided: PD.BooleanParam;
46
46
  ignoreLight: PD.BooleanParam;
47
47
  xrayShaded: PD.BooleanParam;
48
- allowTransparentBackfaces: PD.BooleanParam;
48
+ transparentBackfaces: PD.Select<string>;
49
49
  bumpFrequency: PD.Numeric;
50
50
  bumpAmplitude: PD.Numeric;
51
51
  alpha: PD.Numeric;
@@ -73,7 +73,7 @@ export declare const StructureCylindersParams: {
73
73
  doubleSided: PD.BooleanParam;
74
74
  ignoreLight: PD.BooleanParam;
75
75
  xrayShaded: PD.BooleanParam;
76
- allowTransparentBackfaces: PD.BooleanParam;
76
+ transparentBackfaces: PD.Select<string>;
77
77
  bumpFrequency: PD.Numeric;
78
78
  bumpAmplitude: PD.Numeric;
79
79
  alpha: PD.Numeric;
@@ -210,7 +210,7 @@ export declare const StructureTextureMeshParams: {
210
210
  flatShaded: PD.BooleanParam;
211
211
  ignoreLight: PD.BooleanParam;
212
212
  xrayShaded: PD.BooleanParam;
213
- allowTransparentBackfaces: PD.BooleanParam;
213
+ transparentBackfaces: PD.Select<string>;
214
214
  bumpFrequency: PD.Numeric;
215
215
  bumpAmplitude: PD.Numeric;
216
216
  alpha: PD.Numeric;
@@ -22,7 +22,7 @@ export declare namespace StructureRepresentationRegistry {
22
22
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
23
23
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
24
24
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
25
- allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
25
+ transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
26
26
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
27
27
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
28
28
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -62,7 +62,7 @@ export declare namespace StructureRepresentationRegistry {
62
62
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
63
63
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
64
64
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
65
- allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
65
+ transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
66
66
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
67
67
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
68
68
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -112,7 +112,7 @@ export declare namespace StructureRepresentationRegistry {
112
112
  doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
113
113
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
114
114
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
115
- allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
115
+ transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
116
116
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
117
117
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
118
118
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -158,7 +158,7 @@ export declare namespace StructureRepresentationRegistry {
158
158
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
159
159
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
160
160
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
161
- allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
161
+ transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
162
162
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
163
163
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
164
164
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -209,7 +209,7 @@ export declare namespace StructureRepresentationRegistry {
209
209
  doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
210
210
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
211
211
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
212
- allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
212
+ transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
213
213
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
214
214
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
215
215
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -271,7 +271,7 @@ export declare namespace StructureRepresentationRegistry {
271
271
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
272
272
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
273
273
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
274
- allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
274
+ transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
275
275
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
276
276
  }, "gaussian-surface">;
277
277
  'gaussian-volume': import("./representation").StructureRepresentationProvider<{
@@ -427,7 +427,7 @@ export declare namespace StructureRepresentationRegistry {
427
427
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
428
428
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
429
429
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
430
- allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
430
+ transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
431
431
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
432
432
  }, "molecular-surface">;
433
433
  orientation: import("./representation").StructureRepresentationProvider<{
@@ -442,7 +442,7 @@ export declare namespace StructureRepresentationRegistry {
442
442
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
443
443
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
444
444
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
445
- allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
445
+ transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
446
446
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
447
447
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
448
448
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -500,7 +500,7 @@ export declare namespace StructureRepresentationRegistry {
500
500
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
501
501
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
502
502
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
503
- allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
503
+ transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
504
504
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
505
505
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
506
506
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -534,7 +534,7 @@ export declare namespace StructureRepresentationRegistry {
534
534
  doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
535
535
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
536
536
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
537
- allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
537
+ transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
538
538
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
539
539
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
540
540
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -21,7 +21,7 @@ export declare const BackboneParams: {
21
21
  flatShaded: PD.BooleanParam;
22
22
  ignoreLight: PD.BooleanParam;
23
23
  xrayShaded: PD.BooleanParam;
24
- allowTransparentBackfaces: PD.BooleanParam;
24
+ transparentBackfaces: PD.Select<string>;
25
25
  bumpAmplitude: PD.Numeric;
26
26
  alpha: PD.Numeric;
27
27
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -57,7 +57,7 @@ export declare function getBackboneParams(ctx: ThemeRegistryContext, structure:
57
57
  flatShaded: PD.BooleanParam;
58
58
  ignoreLight: PD.BooleanParam;
59
59
  xrayShaded: PD.BooleanParam;
60
- allowTransparentBackfaces: PD.BooleanParam;
60
+ transparentBackfaces: PD.Select<string>;
61
61
  bumpAmplitude: PD.Numeric;
62
62
  alpha: PD.Numeric;
63
63
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -94,7 +94,7 @@ export declare const BackboneRepresentationProvider: StructureRepresentationProv
94
94
  flatShaded: PD.BooleanParam;
95
95
  ignoreLight: PD.BooleanParam;
96
96
  xrayShaded: PD.BooleanParam;
97
- allowTransparentBackfaces: PD.BooleanParam;
97
+ transparentBackfaces: PD.Select<string>;
98
98
  bumpAmplitude: PD.Numeric;
99
99
  alpha: PD.Numeric;
100
100
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -36,7 +36,7 @@ export declare const BallAndStickParams: {
36
36
  doubleSided: PD.BooleanParam;
37
37
  ignoreLight: PD.BooleanParam;
38
38
  xrayShaded: PD.BooleanParam;
39
- allowTransparentBackfaces: PD.BooleanParam;
39
+ transparentBackfaces: PD.Select<string>;
40
40
  bumpAmplitude: PD.Numeric;
41
41
  alpha: PD.Numeric;
42
42
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -89,7 +89,7 @@ export declare function getBallAndStickParams(ctx: ThemeRegistryContext, structu
89
89
  doubleSided: PD.BooleanParam;
90
90
  ignoreLight: PD.BooleanParam;
91
91
  xrayShaded: PD.BooleanParam;
92
- allowTransparentBackfaces: PD.BooleanParam;
92
+ transparentBackfaces: PD.Select<string>;
93
93
  bumpAmplitude: PD.Numeric;
94
94
  alpha: PD.Numeric;
95
95
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -143,7 +143,7 @@ export declare const BallAndStickRepresentationProvider: StructureRepresentation
143
143
  doubleSided: PD.BooleanParam;
144
144
  ignoreLight: PD.BooleanParam;
145
145
  xrayShaded: PD.BooleanParam;
146
- allowTransparentBackfaces: PD.BooleanParam;
146
+ transparentBackfaces: PD.Select<string>;
147
147
  bumpAmplitude: PD.Numeric;
148
148
  alpha: PD.Numeric;
149
149
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;